mRNA_E-siliculosus-1a_M_contig88.16808.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16808.1
Unique NamemRNA_E-siliculosus-1a_M_contig88.16808.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16808.1 vs. uniprot
Match: D7G268_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G268_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 5.610e-75
Identity = 114/132 (86.36%), Postives = 121/132 (91.67%), Query Frame = 1 
Query:  160 DAAASVRPGSFHGFTSKPDKVLNAVFRDRKVLSNTLQVNMLQTDGIVANARAFKALCLALLRPQEGIKALIPMCAGCGKTIRAVRYHCHKCAKDWCRKCTDPEKRRVTIITRCQKSRSHIECQSCGHSKELT 555
            DA ASVRPGSF GFTS+PD V N VFRDRKVLS+T+QVNMLQTD IVANARAFKALCLALLRPQEGIK LIPMCAGCGKTIRAVR HCH CAK+WCRKCTDPE+RRVTI TRCQKSRSHIECQ+CG+SK LT
Sbjct:   54 DAEASVRPGSFLGFTSEPDHVSNTVFRDRKVLSDTMQVNMLQTDSIVANARAFKALCLALLRPQEGIKVLIPMCAGCGKTIRAVRCHCHTCAKNWCRKCTDPEERRVTI-TRCQKSRSHIECQNCGYSKGLT 184
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G268_ECTSI5.610e-7586.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:227453..228836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size579
Model size579
Exons3
Ec32 orthologEc-16_002290.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16808.1prot_E-siliculosus-1a_M_contig88.16808.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig88 227453..228836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936346.8845491-CDS-E-siliculosus-1a_M_contig88:227452..2277221622936346.8845491-CDS-E-siliculosus-1a_M_contig88:227452..227722Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 227453..227722 +
1696251036.1657875-CDS-E-siliculosus-1a_M_contig88:227452..2277221696251036.1657875-CDS-E-siliculosus-1a_M_contig88:227452..227722Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 227453..227722 +
1622936346.899588-CDS-E-siliculosus-1a_M_contig88:228369..2285421622936346.899588-CDS-E-siliculosus-1a_M_contig88:228369..228542Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 228370..228542 +
1696251036.1780615-CDS-E-siliculosus-1a_M_contig88:228369..2285421696251036.1780615-CDS-E-siliculosus-1a_M_contig88:228369..228542Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 228370..228542 +
1622936346.9131877-CDS-E-siliculosus-1a_M_contig88:228700..2288361622936346.9131877-CDS-E-siliculosus-1a_M_contig88:228700..228836Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 228701..228836 +
1696251036.1898735-CDS-E-siliculosus-1a_M_contig88:228700..2288361696251036.1898735-CDS-E-siliculosus-1a_M_contig88:228700..228836Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 228701..228836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig88.16808.1

>prot_E-siliculosus-1a_M_contig88.16808.1 ID=prot_E-siliculosus-1a_M_contig88.16808.1|Name=mRNA_E-siliculosus-1a_M_contig88.16808.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=193bp
MAAAGAAARSPPPSAPGGHAGGVAACSTTRQPPSVAVAEDTPPSPPGDDH
AGGDAAASVRPGSFHGFTSKPDKVLNAVFRDRKVLSNTLQVNMLQTDGIV
ANARAFKALCLALLRPQEGIKALIPMCAGCGKTIRAVRYHCHKCAKDWCR
KCTDPEKRRVTIITRCQKSRSHIECQSCGHSKELTPYEVLLC*
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mRNA from alignment at E-siliculosus-1a_M_contig88:227453..228836+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig88.16808.1 ID=mRNA_E-siliculosus-1a_M_contig88.16808.1|Name=mRNA_E-siliculosus-1a_M_contig88.16808.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1384bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:227453..228836+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCCGCGGCCGGGGCAGCGGCAAGGTCGCCCCCCCCGTCTGCTCCGGG
TGGTCATGCCGGCGGTGTTGCTGCTTGCAGCACCACCAGACAGCCACCAT
CGGTGGCGGTGGCAGAAGACACGCCGCCATCGCCTCCAGGTGATGACCAC
GCTGGCGGGGACGCTGCAGCTTCCGTTCGTCCAGGCAGCTTCCATGGCTT
TACGTCCAAGCCAGACAAAGTGCTAAACGCCGTTTTTCGGGACCGCAAGG
TTCTCTCCAACACCCTGCAGGTATCCTTCCGTTGAAAACGTGTTGAAATT
TATTTGAAAATATATATGGTAGTGAACAATGCAAATGGTTTCCAGGGCGA
CACGGCTGGCAGGCGAGAAGAATCGAAAACAGAATGGGGGAACGACCTGA
GAATAAAAAACGGCGCAAAAGGAGATTGTATGTAATATTGACCTTCTCAT
CGAAACGCGCCCACGTCCGTGGTGACGATGTAGCTCCTGAAATCACGACA
GAGAAAAGTATGGTTGACATCCAGCCGAGATGCGGCGAGAATTCGGTATC
TTAGTGAGAATACACCCACGAGCAGACAACCACAGGAGAGAATCATACAT
AGACATAGACATAGGGTGTTGGGTCTGTGGATAGTAGTCTGCTCTTTGGG
GAAAGCACAAACACGCTGCAGAATCACATGCATCCCCTTTCCCGGAACAA
GATAGGCTCCTATATCCAACTGGTCTCTCTCCATCTTGTGCAGCACGCTG
AATGCATAGCCGTACCCTCTGCCAGCATCACACAGCCGGAAGTCGATTGT
GATGCCTGGTTATGCGGAATAGTAGAATCCGTACATTGTTCTCTGAAAGT
GGCTGCATACCGGCCCTTGCCCGTCTCCCGCTTGACCTCCCGCTCTCACC
CGCTCGCTCTGCTCCAGGTGAACATGCTGCAGACCGATGGCATTGTCGCG
AACGCTCGGGCGTTCAAGGCGCTATGTCTGGCCCTTCTCCGGCCGCAGGA
GGGTATCAAGGCACTCATCCCCATGTGTGCCGGCTGTGGAAAGACCATCC
GGGCAGTGCGATATCACTGCCACAAGTGCGCAAAGGACTGGTAAGGAAAA
CCTGATTTGGTACAACAACCGTGTGCAGTTCCACATGAACACATTGTGAT
GCTGTTGTAAAGCTACCTTGATCCCACTGGTGTGATGACGATATGAACGG
TGCCTCGCAAACCAACGGCTGCTGGTTCTATTTCGGCGTGCGACGCAGGT
GCCGGAAGTGTACGGACCCCGAGAAACGGCGCGTCACCATTATTACTCGG
TGCCAGAAATCCCGCAGCCATATCGAGTGCCAAAGCTGCGGCCACTCGAA
GGAGCTCACCCCCTATGAAGTATTGTTGTGTTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:227453..228836+

>mRNA_E-siliculosus-1a_M_contig88.16808.1 ID=mRNA_E-siliculosus-1a_M_contig88.16808.1|Name=mRNA_E-siliculosus-1a_M_contig88.16808.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1158bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:227453..228836+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCCGCGGCCGGGGCAGCGGCAAGGTCGCCCCCCCCGTCTGCTCCGGG
TGGTCATGCCGGCGGTGTTGCTGCTTGCAGCACCACCAGACAGCCACCAT
CGGTGGCGGTGGCAGAAGACACGCCGCCATCGCCTCCAGGTGATGACCAC
GCTGGCGGGGACGCTGCAGCTTCCGTTCGTCCAGGCAGCTTCCATGGCTT
TACGTCCAAGCCAGACAAAGTGCTAAACGCCGTTTTTCGGGACCGCAAGG
TTCTCTCCAACACCCTGCAGATGGCCGCGGCCGGGGCAGCGGCAAGGTCG
CCCCCCCCGTCTGCTCCGGGTGGTCATGCCGGCGGTGTTGCTGCTTGCAG
CACCACCAGACAGCCACCATCGGTGGCGGTGGCAGAAGACACGCCGCCAT
CGCCTCCAGGTGATGACCACGCTGGCGGGGACGCTGCAGCTTCCGTTCGT
CCAGGCAGCTTCCATGGCTTTACGTCCAAGCCAGACAAAGTGCTAAACGC
CGTTTTTCGGGACCGCAAGGTTCTCTCCAACACCCTGCAGGTGAACATGC
TGCAGACCGATGGCATTGTCGCGAACGCTCGGGCGTTCAAGGCGCTATGT
CTGGCCCTTCTCCGGCCGCAGGAGGGTATCAAGGCACTCATCCCCATGTG
TGCCGGCTGTGGAAAGACCATCCGGGCAGTGCGATATCACTGCCACAAGT
GCGCAAAGGACTGGTGAACATGCTGCAGACCGATGGCATTGTCGCGAACG
CTCGGGCGTTCAAGGCGCTATGTCTGGCCCTTCTCCGGCCGCAGGAGGGT
ATCAAGGCACTCATCCCCATGTGTGCCGGCTGTGGAAAGACCATCCGGGC
AGTGCGATATCACTGCCACAAGTGCGCAAAGGACTGGTGCCGGAAGTGTA
CGGACCCCGAGAAACGGCGCGTCACCATTATTACTCGGTGCCAGAAATCC
CGCAGCCATATCGAGTGCCAAAGCTGCGGCCACTCGAAGGAGCTCACCCC
CTATGAAGTATTGTTGTGTTAAGTGCCGGAAGTGTACGGACCCCGAGAAA
CGGCGCGTCACCATTATTACTCGGTGCCAGAAATCCCGCAGCCATATCGA
GTGCCAAAGCTGCGGCCACTCGAAGGAGCTCACCCCCTATGAAGTATTGT
TGTGTTAA
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