mRNA_E-siliculosus-1a_M_contig877.16785.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig877.16785.1
Unique NamemRNA_E-siliculosus-1a_M_contig877.16785.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig877.16785.1 vs. uniprot
Match: D7G7T2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7T2_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 1.270e-108
Identity = 164/182 (90.11%), Postives = 168/182 (92.31%), Query Frame = 1 
Query:    1 MLIIGQRADALAGPWHAALLLLLLSGLRQLGFCSALLRVAPPHRSNFKMFKARYPLEGGPPQVKLHVAIIVEDSRSTGEKGDRPNSEDGDTGRRLVLFDFLPKEPTAFETTLRLLTGNDVPGNLRERGAS-IPAFRVGVRGESDATIGDMRGFVAKYPDRLSLVSNNCFSFVDAFVARHRLE 543
            M+I+GQRA ALAGPWHAALLLLLLS LRQLGFCSALL VAPPHRSNFKMFKARYPLEGGPPQVKLH+AIIVEDSRSTGEKG RPNSED DTGRRLVLFDFLPKEPTAFETTLRLLTGNDVPGNLRER    +P   V V GESDATIGDMRGFVAKYPDRLSLVSNNCFSFVDAFVARHRLE
Sbjct:    1 MVILGQRAAALAGPWHAALLLLLLSSLRQLGFCSALLGVAPPHRSNFKMFKARYPLEGGPPQVKLHIAIIVEDSRSTGEKGGRPNSEDRDTGRRLVLFDFLPKEPTAFETTLRLLTGNDVPGNLRERELRFLPPGSVYV-GESDATIGDMRGFVAKYPDRLSLVSNNCFSFVDAFVARHRLE 181
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig877.16785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7T2_ECTSI1.270e-10890.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig877contigE-siliculosus-1a_M_contig877:2586..3131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size546
Model size546
Exons1
Hectar predicted targeting categorysignal peptide
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936340.6699996-CDS-E-siliculosus-1a_M_contig877:2585..31311622936340.6699996-CDS-E-siliculosus-1a_M_contig877:2585..3131Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig877 2586..3131 +
1696251033.8030899-CDS-E-siliculosus-1a_M_contig877:2585..31311696251033.8030899-CDS-E-siliculosus-1a_M_contig877:2585..3131Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig877 2586..3131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig877.16785.1prot_E-siliculosus-1a_M_contig877.16785.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig877 2586..3131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig877.16785.1

>prot_E-siliculosus-1a_M_contig877.16785.1 ID=prot_E-siliculosus-1a_M_contig877.16785.1|Name=mRNA_E-siliculosus-1a_M_contig877.16785.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=182bp
MLIIGQRADALAGPWHAALLLLLLSGLRQLGFCSALLRVAPPHRSNFKMF
KARYPLEGGPPQVKLHVAIIVEDSRSTGEKGDRPNSEDGDTGRRLVLFDF
LPKEPTAFETTLRLLTGNDVPGNLRERGASIPAFRVGVRGESDATIGDMR
GFVAKYPDRLSLVSNNCFSFVDAFVARHRLE*
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mRNA from alignment at E-siliculosus-1a_M_contig877:2586..3131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig877.16785.1 ID=mRNA_E-siliculosus-1a_M_contig877.16785.1|Name=mRNA_E-siliculosus-1a_M_contig877.16785.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=546bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig877:2586..3131+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTGATTATCGGGCAAAGAGCAGATGCGCTGGCCGGCCCTTGGCATGC
GGCGCTGCTCCTGCTCCTGCTGTCTGGCCTGCGGCAGCTCGGTTTCTGTT
CTGCTCTTCTTCGGGTAGCACCACCACACCGCTCCAACTTCAAGATGTTC
AAGGCAAGATACCCGCTGGAAGGGGGCCCGCCGCAAGTGAAACTACACGT
CGCCATCATCGTGGAAGACTCTCGAAGCACAGGCGAGAAGGGTGATCGAC
CAAACAGCGAAGACGGAGACACCGGGCGACGCTTGGTTCTGTTCGATTTT
CTGCCCAAAGAACCAACGGCGTTCGAAACAACGCTTCGCTTGCTGACGGG
AAACGACGTTCCGGGAAACCTGAGAGAGCGGGGAGCTTCGATTCCTGCCT
TCCGGGTCGGTGTACGTGGGGAGAGCGATGCGACTATTGGCGACATGCGA
GGATTTGTAGCAAAGTATCCTGATCGTCTGTCGCTGGTATCGAACAATTG
CTTTTCATTTGTTGATGCCTTTGTTGCAAGGCATCGCCTAGAGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig877:2586..3131+

>mRNA_E-siliculosus-1a_M_contig877.16785.1 ID=mRNA_E-siliculosus-1a_M_contig877.16785.1|Name=mRNA_E-siliculosus-1a_M_contig877.16785.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1092bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig877:2586..3131+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTGATTATCGGGCAAAGAGCAGATGCGCTGGCCGGCCCTTGGCATGC
GGCGCTGCTCCTGCTCCTGCTGTCTGGCCTGCGGCAGCTCGGTTTCTGTT
CTGCTCTTCTTCGGGTAGCACCACCACACCGCTCCAACTTCAAGATGTTC
AAGGCAAGATACCCGCTGGAAGGGGGCCCGCCGCAAGTGAAACTACACGT
CGCCATCATCGTGGAAGACTCTCGAAGCACAGGCGAGAAGGGTGATCGAC
CAAACAGCGAAGACGGAGACACCGGGCGACGCTTGGTTCTGTTCGATTTT
CTGCCCAAAGAACCAACGGCGTTCGAAACAACGCTTCGCTTGCTGACGGG
AAACGACGTTCCGGGAAACCTGAGAGAGCGGGGAGCTTCGATTCCTGCCT
TCCGGGTCGGTGTACGTGGGGAGAGCGATGCGACTATTGGCGACATGCGA
GGATTTGTAGCAAAGTATCCTGATCGTCTGTCGCTGGTATCGAACAATTG
CTTTTCATTTGTTGATGCCTTTGTTGCAAGGCATCGCCTAGAGTAAATGC
TGATTATCGGGCAAAGAGCAGATGCGCTGGCCGGCCCTTGGCATGCGGCG
CTGCTCCTGCTCCTGCTGTCTGGCCTGCGGCAGCTCGGTTTCTGTTCTGC
TCTTCTTCGGGTAGCACCACCACACCGCTCCAACTTCAAGATGTTCAAGG
CAAGATACCCGCTGGAAGGGGGCCCGCCGCAAGTGAAACTACACGTCGCC
ATCATCGTGGAAGACTCTCGAAGCACAGGCGAGAAGGGTGATCGACCAAA
CAGCGAAGACGGAGACACCGGGCGACGCTTGGTTCTGTTCGATTTTCTGC
CCAAAGAACCAACGGCGTTCGAAACAACGCTTCGCTTGCTGACGGGAAAC
GACGTTCCGGGAAACCTGAGAGAGCGGGGAGCTTCGATTCCTGCCTTCCG
GGTCGGTGTACGTGGGGAGAGCGATGCGACTATTGGCGACATGCGAGGAT
TTGTAGCAAAGTATCCTGATCGTCTGTCGCTGGTATCGAACAATTGCTTT
TCATTTGTTGATGCCTTTGTTGCAAGGCATCGCCTAGAGTAA
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