mRNA_E-siliculosus-1a_M_contig87.16776.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig87.16776.1
Unique NamemRNA_E-siliculosus-1a_M_contig87.16776.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig87.16776.1 vs. uniprot
Match: D7FW09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW09_ECTSI)

HSP 1 Score: 290 bits (742), Expect = 1.420e-88
Identity = 151/155 (97.42%), Postives = 153/155 (98.71%), Query Frame = 1 
Query:   49 ASYIFRQITAHLAYYLGLYDEAEASIERALELGHEEDGSMQLRLARMHVRREKADSTNAERHLRSALASYSEAMKFVRVASEAIHYLEVTSVYLKLNETQRAANALSTVLVRWPALLVDAENDGHGSVPVIEGDRAEVDLPVASNVLGGESIFLQ 513
            A +IFRQITAHLAYYLGLYDEAEASIERALELGHEEDGSMQLRLARMHVRREKADS NAERHLRSALASYSEAMKFVRVASEA+HYLEVTSVYLKLNETQRAANALSTVLVRWPALLVDAENDGHGSVPVIEGDRAEVDLPVASNVLGGESIFLQ
Sbjct:   16 ACFIFRQITAHLAYYLGLYDEAEASIERALELGHEEDGSMQLRLARMHVRREKADSANAERHLRSALASYSEAMKFVRVASEAVHYLEVTSVYLKLNETQRAANALSTVLVRWPALLVDAENDGHGSVPVIEGDRAEVDLPVASNVLGGESIFLQ 170
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BLAST of mRNA_E-siliculosus-1a_M_contig87.16776.1 vs. uniprot
Match: A0A6H5JP04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP04_9PHAE)

HSP 1 Score: 288 bits (737), Expect = 1.180e-87
Identity = 151/156 (96.79%), Postives = 153/156 (98.08%), Query Frame = 1 
Query:   58 IFRQITAHLAYYLGLYDEAEASIERALELGHEEDGSMQLRLARMHVRREKADSTNAERHLRSALASYSEAMKFVRVASEAIHYLEVTSVYLKLNETQRAANALSTVLVRWPALLVDAENDGHGSVPVIEGDRAEVDLPVASNVLGGESIFLQARLT 525
            IFRQITAHLAYYLGLYDEAEASIERALELGHEEDGSMQLRLARMHVRREKADS +AERHLRSALASYSEAMKFVRVASEAIHYLEVTSVYLKLNETQRAANALSTVL+RWPALLVD ENDGHGSVPVIEGDRAEVDLPVAS VLGGESIFLQARLT
Sbjct:   19 IFRQITAHLAYYLGLYDEAEASIERALELGHEEDGSMQLRLARMHVRREKADSASAERHLRSALASYSEAMKFVRVASEAIHYLEVTSVYLKLNETQRAANALSTVLLRWPALLVDTENDGHGSVPVIEGDRAEVDLPVASYVLGGESIFLQARLT 174
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig87.16776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW09_ECTSI1.420e-8897.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP04_9PHAE1.180e-8796.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig87contigE-siliculosus-1a_M_contig87:639330..641132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size525
Model size529
Exons3
Ec32 orthologEc-01_002910.2
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig87.16776.1prot_E-siliculosus-1a_M_contig87.16776.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig87 639332..641132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936339.2593343-CDS-E-siliculosus-1a_M_contig87:639331..6394661622936339.2593343-CDS-E-siliculosus-1a_M_contig87:639331..639466Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 639332..639466 -
1696251033.1830719-CDS-E-siliculosus-1a_M_contig87:639331..6394661696251033.1830719-CDS-E-siliculosus-1a_M_contig87:639331..639466Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 639332..639466 -
1622936339.2731526-CDS-E-siliculosus-1a_M_contig87:640077..6401551622936339.2731526-CDS-E-siliculosus-1a_M_contig87:640077..640155Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 640078..640155 -
1696251033.1958666-CDS-E-siliculosus-1a_M_contig87:640077..6401551696251033.1958666-CDS-E-siliculosus-1a_M_contig87:640077..640155Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 640078..640155 -
1622936339.2891517-CDS-E-siliculosus-1a_M_contig87:640820..6411321622936339.2891517-CDS-E-siliculosus-1a_M_contig87:640820..641132Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 640821..641132 -
1696251033.2067974-CDS-E-siliculosus-1a_M_contig87:640820..6411321696251033.2067974-CDS-E-siliculosus-1a_M_contig87:640820..641132Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig87 640821..641132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig87.16776.1

>prot_E-siliculosus-1a_M_contig87.16776.1 ID=prot_E-siliculosus-1a_M_contig87.16776.1|Name=mRNA_E-siliculosus-1a_M_contig87.16776.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=175bp
VDFPYSRTLRSLYMWHASYIFRQITAHLAYYLGLYDEAEASIERALELGH
EEDGSMQLRLARMHVRREKADSTNAERHLRSALASYSEAMKFVRVASEAI
HYLEVTSVYLKLNETQRAANALSTVLVRWPALLVDAENDGHGSVPVIEGD
RAEVDLPVASNVLGGESIFLQARLT
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mRNA from alignment at E-siliculosus-1a_M_contig87:639330..641132-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig87.16776.1 ID=mRNA_E-siliculosus-1a_M_contig87.16776.1|Name=mRNA_E-siliculosus-1a_M_contig87.16776.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1803bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:639330..641132- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTTGACTTTCCTTACTCGCGAACGCTTCGCAGTCTTTATATGTGGCATGC
TTCATATATATTTCGACAAATCACAGCGCACCTGGCGTACTATCTTGGGT
TGTACGACGAGGCCGAGGCCTCCATCGAGCGGGCCCTCGAGCTCGGCCAT
GAAGAGGACGGCAGCATGCAGCTGCGCCTGGCCCGGATGCACGTGCGCAG
GGAGAAGGCCGACTCCACCAACGCTGAACGGCACCTGCGCTCGGCCCTCG
CTTCATACAGCGAGGCGATGAAGTTCGTGCGAGTTGCGTCTGAGGCCATA
CACTACCTCGAGGTGATAGAGAAATACATATTTTCCTTCCTTTGATTCTA
TGTAGAAGCGTTTTCAAGCACTTCTTTGATGAGTCTACACCTTGGGCGTT
GTATGTGTTCAAGTTACCTTGTTTGCCTCCCTACTGCGAGCACTCTGTAC
GCAGTCCCGTTCTGTATTTCAATCCACTCTTGCCTGGAATTGGCCGAGAT
TCACGCGTACCTCCCTAGTAAGACGGGTTCCCACCCCCAAGACTAAACGC
GGATTTGTAGTCAAAGAGAGGGGAGCAGAAGATTCGGGACATTAGCATCT
GTTCATGCAACATCCCGCCGCCCATCCCAGGGCCCTGGGCCGTTCTATTG
GCGAAGAGGTTCGTGACTCGACGGCATTCAATAGACTTACCCTGCCCAAT
CAAAAATATATACAATGCAATAACAGGTTCATTCGGAGGATGCGAGTACA
CGACAGTCATTCAAGTGGTAGACACATGTCTAGTTCATCCAACCTCCCCG
CTTGCCGTATATGGGCTGAGAATGATGATCTCAACAACGATAAAGCAACA
TCGATTGCTAGAACAGGTGCTTCATGATGTGTGTTGGTCGCACGTTTTGC
GCGGAGAGAATAGGGAAGGCGCCCGTGGCCCTCTCGCCCCACTTTTTCCT
TCTCAATCGGCTCTTTTTTGCGGGCAGGTTACGTCCGTGTACCTCAAGCT
GAACGAGACGCAGAGAGCGGCCAACGCTCTGTCAACGGTGTTGGTTCGAT
GGCCGGTAAGAATTTCGATAGAGATTTGAAAGAATACAAGCTTCGAAGCA
ATTTGTTGGTACTGCTGTTCTTGAGGAATACCTGGTCGGTGTTGACAGCC
ACACGTACCCGGTCCCGTGGCCCGGTCATTGGAGCAACGACAGGGCAAAT
ACGATTTTTGGAGCAATAGCAGGACCTATACGGTTGTTACCTACCTTGGG
CGCGCTCTGACGCCCCGAGTGTTGTTGTTCCGCCCATGCAGCAATCGAGG
GAGGCCGTGCTTGCAAAGGAGACTTGCGCGCAGACTCTACTGACGCGGGG
ACAGGCTTCACAGGCCCTTGGTTTTTACAAGGTATTGCAGAACAACGGGT
CTAGAAGACATGGCAAATTATGGTACATGCGCTGTTGTGCTTGGAGGACG
TTCACCCTGCCCTGCGCTACGTATCCTTGGTGATGGTGGTGCCGTTTCGC
GTACTACACGGACGCTTTGTCGAACGGAGCAATTCTCAGCCACTTTGTCT
CACGCTGCCATCGAGTGCAGTTTCACCGAAATTGAATCAGGAGTACAGAG
AACGCGGAGGAGAGTTTTTACTTCCAAACATCACACTCGTTGCGCTTGTG
TTGTCGTTTAGAACAGGCTCTTCTGGTGGACGCCGAGAACGACGGGCACG
GCAGCGTGCCGGTAATTGAGGGTGATCGTGCGGAGGTAGACCTCCCCGTA
GCCAGCAACGTCCTCGGCGGGGAAAGCATTTTCTTGCAGGCAAGACTGAC
AAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig87:639330..641132-

>mRNA_E-siliculosus-1a_M_contig87.16776.1 ID=mRNA_E-siliculosus-1a_M_contig87.16776.1|Name=mRNA_E-siliculosus-1a_M_contig87.16776.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1050bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:639330..641132- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTTGACTTTCCTTACTCGCGAACGCTTCGCAGTCTTTATATGTGGCATGC
TTCATATATATTTCGACAAATCACAGCGCACCTGGCGTACTATCTTGGGT
TGTACGACGAGGCCGAGGCCTCCATCGAGCGGGCCCTCGAGCTCGGCCAT
GAAGAGGACGGCAGCATGCAGCTGCGCCTGGCCCGGATGCACGTGCGCAG
GGAGAAGGCCGACTCCACCAACGCTGAACGGCACCTGCGCTCGGCCCTCG
CTTCATACAGCGAGGCGATGAAGTTCGTGCGAGTTGCGTCTGAGGCCATA
CACTACCTCGAGGTTGACTTTCCTTACTCGCGAACGCTTCGCAGTCTTTA
TATGTGGCATGCTTCATATATATTTCGACAAATCACAGCGCACCTGGCGT
ACTATCTTGGGTTGTACGACGAGGCCGAGGCCTCCATCGAGCGGGCCCTC
GAGCTCGGCCATGAAGAGGACGGCAGCATGCAGCTGCGCCTGGCCCGGAT
GCACGTGCGCAGGGAGAAGGCCGACTCCACCAACGCTGAACGGCACCTGC
GCTCGGCCCTCGCTTCATACAGCGAGGCGATGAAGTTCGTGCGAGTTGCG
TCTGAGGCCATACACTACCTCGAGGTTACGTCCGTGTACCTCAAGCTGAA
CGAGACGCAGAGAGCGGCCAACGCTCTGTCAACGGTGTTGGTTCGATGGC
CGGTTACGTCCGTGTACCTCAAGCTGAACGAGACGCAGAGAGCGGCCAAC
GCTCTGTCAACGGTGTTGGTTCGATGGCCGGCTCTTCTGGTGGACGCCGA
GAACGACGGGCACGGCAGCGTGCCGGTAATTGAGGGTGATCGTGCGGAGG
TAGACCTCCCCGTAGCCAGCAACGTCCTCGGCGGGGAAAGCATTTTCTTG
CAGGCAAGACTGACAGCTCTTCTGGTGGACGCCGAGAACGACGGGCACGG
CAGCGTGCCGGTAATTGAGGGTGATCGTGCGGAGGTAGACCTCCCCGTAG
CCAGCAACGTCCTCGGCGGGGAAAGCATTTTCTTGCAGGCAAGACTGACA
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