mRNA_E-siliculosus-1a_M_contig87.16760.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig87.16760.1 vs. uniprot
Match: D7FW22_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW22_ECTSI) HSP 1 Score: 824 bits (2129), Expect = 2.580e-298 Identity = 451/476 (94.75%), Postives = 461/476 (96.85%), Query Frame = 1
Query: 229 MNETGSGTVTLWEFREYFDLPDDRSTTRLFRCFDEDRDNRIGFLELVVGMWTYCCNCNASVVCLCFDLLDMDHNGKIGADEFDFMIVDVFGPEWEENDEAKAVHTWFHERDDALLGFPEMGMDAWSAFVSANLQIQAPAVHTRLVLQKKVLGVGFWTHCLRKNMTIFLGRTATVDQILSAHVSPNVLEELAQDRRLELDHDDSTQFNLRVIRRTGPFPRRRKYRDMGGKRLRAKAAAVVGAVAADNVKKFATLTVREVFERVTVPAGQDATWEEPKPPSTLQALMASLTAIVERAPPGGAXXXXXXXXXXXXXXXXXXXXXXSKKRNKNKKGAPPDALALLKNRPGIDGAPLGSPAAAPSSPTGSAVDADPAIANAFYGLKPLPEAVAPVSPSAAAGSGRDRAKTAARTAKKGGSPAASSPGGSRAVGGGRTTLSRTGKELVGAGEVGCVGVPGGEGGTGALSTRLLGGANGGRSG 1656
MNETG+GTVTLWEFREYF+LPDDRSTTRLFRCFDEDRDNRIGFLELVVGMWTYCCNCNASVVCLCFDLLDMDHNGKIGADEF+FMIVDVFGPEWE+NDEAKAVHTWFHERDDALLGFPEM MDAWSAFVSAN QIQAPAVHTRLVLQKKVLGVGFWTHCL KNMTIFLGRTATV+QILSAHVSPN+LEELAQDRRLELDHDDSTQFNLRVIRRTGPFPRRRKYRDM GK+LRAKAAA VGAVAADNVKKFATLTVRE FERVTVPAG+DATWE+PKPPSTLQALMASLTAIVERAPPGGAXXXXXXXXXXXXXXXXXXXXXXSKKR NKKGAPPDALALLKNRPGIDGAPLGSPA APSSPTGSAVDADPAIANAFYGLKPLPEAVAPVSPSAAAGSGRDRAKTAARTAKKG SPAASSP GSRAVGGG+ TLSRTGKELVGAGEVGCVGVPGGEGGTG LS RLLGGANG RSG
Sbjct: 1 MNETGNGTVTLWEFREYFNLPDDRSTTRLFRCFDEDRDNRIGFLELVVGMWTYCCNCNASVVCLCFDLLDMDHNGKIGADEFNFMIVDVFGPEWEKNDEAKAVHTWFHERDDALLGFPEMDMDAWSAFVSANPQIQAPAVHTRLVLQKKVLGVGFWTHCLPKNMTIFLGRTATVEQILSAHVSPNILEELAQDRRLELDHDDSTQFNLRVIRRTGPFPRRRKYRDMAGKKLRAKAAAAVGAVAADNVKKFATLTVREAFERVTVPAGKDATWEDPKPPSTLQALMASLTAIVERAPPGGAXXXXXXXXXXXXXXXXXXXXXXSKKRKNNKKGAPPDALALLKNRPGIDGAPLGSPAVAPSSPTGSAVDADPAIANAFYGLKPLPEAVAPVSPSAAAGSGRDRAKTAARTAKKGVSPAASSPEGSRAVGGGKITLSRTGKELVGAGEVGCVGVPGGEGGTGTLSARLLGGANGVRSG 476
BLAST of mRNA_E-siliculosus-1a_M_contig87.16760.1 vs. uniprot
Match: A0A6H5JA76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA76_9PHAE) HSP 1 Score: 147 bits (371), Expect = 4.060e-39 Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = -2
Query: 1074 MAGSASTAEPVGDEGAAAGDPRGAPSMPGRFLSRASASGGAPFLFLFLFLEEVGDLDAGLRERDGEALLPAAGAPPGGARSTMAVRLAMSA 1346
MAGSAS EPVGDEG AAGDPRGAPSMPGRFLSRASASGGAPFLF F FLEE GDLDAGLR+RDG+ALLPAAG PPGGARSTMAVRLAMSA
Sbjct: 1 MAGSASITEPVGDEGMAAGDPRGAPSMPGRFLSRASASGGAPFLFFF-FLEEDGDLDAGLRKRDGDALLPAAGTPPGGARSTMAVRLAMSA 90 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig87.16760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig87.16760.1 >prot_E-siliculosus-1a_M_contig87.16760.1 ID=prot_E-siliculosus-1a_M_contig87.16760.1|Name=mRNA_E-siliculosus-1a_M_contig87.16760.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=553bp MGAAASLVTEDQRASLHIAVLQVLPSVVYALEERRFKAGSFYETPEFAQQback to top mRNA from alignment at E-siliculosus-1a_M_contig87:519767..523394- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig87.16760.1 ID=mRNA_E-siliculosus-1a_M_contig87.16760.1|Name=mRNA_E-siliculosus-1a_M_contig87.16760.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3628bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:519767..523394- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig87:519767..523394- >mRNA_E-siliculosus-1a_M_contig87.16760.1 ID=mRNA_E-siliculosus-1a_M_contig87.16760.1|Name=mRNA_E-siliculosus-1a_M_contig87.16760.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3318bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:519767..523394- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |