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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig87.16754.1 vs. uniprot
Match: D7FW28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW28_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 3.240e-18 Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 2
Query: 284 MQGSSWTRWTYPFDHENSKKCRKYWTAVRPRISKHRWWA 400
MQGSSWTRWTYPFDHENSKKCRKYWTAV PRISKHR WA
Sbjct: 1 MQGSSWTRWTYPFDHENSKKCRKYWTAVPPRISKHRSWA 39
BLAST of mRNA_E-siliculosus-1a_M_contig87.16754.1 vs. uniprot
Match: A0A6T9LUZ6_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A6T9LUZ6_9EUKA) HSP 1 Score: 81.6 bits (200), Expect = 7.720e-15 Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 1
Query: 214 SGAFAAAGKVNKPLGQESFRRIRDARQQLDSVDVPLRSRKFEEVQEVLDSGATADLEASLVGLVKSNSLPADDRLAVGTIRRYGLAADALIALGGLSAAARDGDGGEARRMLTLTKESLNDIL 582
+G+ AAGKVN + ++ +R AR LD VD + ++ +L A LE +L+ LV S L D+R ++GTI+RYG+ ADALI +GGL +A R GDG A + K SL++I+
Sbjct: 62 AGSAKAAGKVNAAVAYAAYAELRAARSSLDKVDSLIGKSDYKAAASILTEPPLATLEVNLLTLVASPELGPDERKSIGTIKRYGVGADALIMMGGLGSALRSGDGSGASDYTSKAKASLDEIV 184
BLAST of mRNA_E-siliculosus-1a_M_contig87.16754.1 vs. uniprot
Match: A0A835ZDP8_9STRA (Tetrapyrrole methylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP8_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 6.220e-11 Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1
Query: 382 EASLVGLVKSNSLPADDRLAVGTIRRYGLAADALIALGGLSAAARDGDGGEARRMLTLTKESLND 576
EA+L+ LV SN L +D++AVGTIRRYG+AAD LI LGG+ AAA D D EA R LTL K SL+D
Sbjct: 210 EANLLNLVNSNVLEREDKVAVGTIRRYGIAADILITLGGVRAAANDEDAREALRSLTLAKNSLDD 274
BLAST of mRNA_E-siliculosus-1a_M_contig87.16754.1 vs. uniprot
Match: A0A8J2X3F4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3F4_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 3.220e-9 Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 1
Query: 220 AFAAAGKVNKPLGQESFRRIRDARQQLDSVDVPLRSRKFEEVQEVLDSGATADLEASLVGLVKSNSLPADDRLAVGTIRRYGLAADALIALGGLSAAARDGDGGEARRMLTLTKESLNDILTI 588
A AA+ K + Q++F ++ AR LD+VD PL L + E + +V++ L +D+ A+GTIRRYG+AAD +I GGLS A +GD +A+ L K SL++++ +
Sbjct: 75 AHAASKKYSAADAQKAFGELKAARAALDAVDKPLXXXXXXXXXXXLQAPPLVAFEENATIIVQAPVLTVEDKKAIGTIRRYGVAADVIIMTGGLSEALDNGDVRQAKSFLAKAKGSLDEVIGV 197
BLAST of mRNA_E-siliculosus-1a_M_contig87.16754.1 vs. uniprot
Match: F0YPD1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPD1_AURAN) HSP 1 Score: 62.0 bits (149), Expect = 3.200e-7 Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = 1
Query: 187 AAAAVLAKPSGAFAAAGKVNKPLGQESFRRIRDARQQLDSVDVPLRSRKFEEVQEVLDSGATADLEASLVGLVKSNSLPADDRLAVGTIRRYGLAADALIALGGLSAAARDGDGGEARRMLTLTKESLNDILTI 588
AAAA P A AA K + +++ I+ R+ LD +D L F+ L + +A+++ +++ L A+D+ A+GTIRRYG+AAD +I GGL A RD D A+ L K SL+++++I
Sbjct: 195 AAAAAPLIPLAAAAAPKKYSADDAKQAIAGIKAGRKALDGIDALLAKGDFDGAAAALAPIDAFEDQATII--IQAPVLAAEDKKAIGTIRRYGVAADVIIMAGGLKEALRDEDARGAKSYLAKCKGSLDEVISI 326
BLAST of mRNA_E-siliculosus-1a_M_contig87.16754.1 vs. uniprot
Match: A0A7S0NYT5_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NYT5_9EUKA) HSP 1 Score: 54.7 bits (130), Expect = 4.130e-5 Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = 1
Query: 256 GQESFRRIRDARQQLDSVDVPLRSRKFEEVQEVLDSGATADLEASLVGLVKSNSLPADD-RLAVGTIRRYGLAADALIALGGLSAAARDGDGGEARRMLTLTKESLNDILTIG 591
GQ +F I AR LD++D + F +L + + + LV+S +LP + + ++GT++R+GLAAD I LG L A +GD +R L K L+++L +G
Sbjct: 107 GQLAFAEIVAARSALDTIDRLIAGSDFFSATALLGKRPLSTFTENALILVQSAALPDPEAKKSIGTVKRFGLAADVAILLGALQEALSNGDASGSRSFLKKAKAPLDEMLALG 219
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 1 |
| Cds size | 120 |
| Model size | 959 |
| Exons | 4 |
| Ec32 ortholog | Ec-01_003140.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | no signal peptide or anchor |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936335.094973-UTR-E-siliculosus-1a_M_contig87:482244..482745 | 1622936335.094973-UTR-E-siliculosus-1a_M_contig87:482244..482745 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig87 482245..482745 - |
| 1696251031.1748357-UTR-E-siliculosus-1a_M_contig87:482244..482745 | 1696251031.1748357-UTR-E-siliculosus-1a_M_contig87:482244..482745 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig87 482245..482745 - |
| 1622936335.1146224-UTR-E-siliculosus-1a_M_contig87:483191..483246 | 1622936335.1146224-UTR-E-siliculosus-1a_M_contig87:483191..483246 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig87 483192..483246 - |
| 1696251031.1856666-UTR-E-siliculosus-1a_M_contig87:483191..483246 | 1696251031.1856666-UTR-E-siliculosus-1a_M_contig87:483191..483246 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig87 483192..483246 - |
| 1622936335.1640062-UTR-E-siliculosus-1a_M_contig87:483583..483682 | 1622936335.1640062-UTR-E-siliculosus-1a_M_contig87:483583..483682 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig87 483584..483682 - |
| 1696251031.22795-UTR-E-siliculosus-1a_M_contig87:483583..483682 | 1696251031.22795-UTR-E-siliculosus-1a_M_contig87:483583..483682 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig87 483584..483682 - |
| 1622936335.3719478-UTR-E-siliculosus-1a_M_contig87:486315..486499 | 1622936335.3719478-UTR-E-siliculosus-1a_M_contig87:486315..486499 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig87 486316..486499 - |
| 1696251031.2414048-UTR-E-siliculosus-1a_M_contig87:486315..486499 | 1696251031.2414048-UTR-E-siliculosus-1a_M_contig87:486315..486499 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig87 486316..486499 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936335.1320076-CDS-E-siliculosus-1a_M_contig87:483246..483301 | 1622936335.1320076-CDS-E-siliculosus-1a_M_contig87:483246..483301 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig87 483247..483301 - |
| 1696251031.1961193-CDS-E-siliculosus-1a_M_contig87:483246..483301 | 1696251031.1961193-CDS-E-siliculosus-1a_M_contig87:483246..483301 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig87 483247..483301 - |
| 1622936335.1483781-CDS-E-siliculosus-1a_M_contig87:483518..483583 | 1622936335.1483781-CDS-E-siliculosus-1a_M_contig87:483518..483583 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig87 483519..483583 - |
| 1696251031.206027-CDS-E-siliculosus-1a_M_contig87:483518..483583 | 1696251031.206027-CDS-E-siliculosus-1a_M_contig87:483518..483583 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig87 483519..483583 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig87.16754.1 >prot_E-siliculosus-1a_M_contig87.16754.1 ID=prot_E-siliculosus-1a_M_contig87.16754.1|Name=mRNA_E-siliculosus-1a_M_contig87.16754.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=40bp
MQGSSWTRWTYPFDHENSKKCRKYWTAVRPRISKHRWWA* back to topmRNA from alignment at E-siliculosus-1a_M_contig87:482245..486499- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig87.16754.1 ID=mRNA_E-siliculosus-1a_M_contig87.16754.1|Name=mRNA_E-siliculosus-1a_M_contig87.16754.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4255bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:482245..486499- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) CTGCATGACACTACAGAGGGCATGCACATGTTCATCGGACAACAGAGAAG
CAACATGTTGTTGCGTCTAGGGACGCTTGCTCTCTTGGCCTACACCAGCC
ATGGGTTCGTCATGAGTCTGGGCTGTGGTCCCAGCGAGCGAGCGTTGAGC
AGACGCGAAGCGATTTCAAAGGTTTCCCTGGCAGGTGACGAATCAAAGCA
TCAAACCTTGCGACGTTGCGAGAACGACTGACTCCGGTACTCGGTCAAGC
GTAGATCCTATCTTGCTGAGTCTTATCGTTGTCATCATTTGTTCAAGGGT
GATGGCTGCCTCATGAAAAGCGTGGTGAAGTTTAGCTCGTTGTCTCTCAA
GGTAGTTGTACTTTCTATCCAACAATCAGAAGTTGCACATGTTTGTTGGG
GCAACAACAGCAGCAGCAGCAGCTGCACACAAACAGCCTGCTGAGACATA
CATGTCTACACGGCACCATGATGATGGCAGAAAGGAATGAACGAATGAAC
CGCATGGATGGTTGTGAGAAAGAGTGTGTGGTAGTAATTTAGTAGATCTT
GCTGTCGATGAAGGGCAAAAAAATGGTCTTCATTTCTAGTTTTTTCTTTA
TAGGGTCAACATCGGCGTGTAGTTCTGGGCCCCCGCAACGGCTGAAGGGA
CGGCTCATGTCGGGTTTGAGTAGGTTGAGCATCAATTGACGAATCGTAAG
CAGCGCAACCAGACACACAAGTTTGTGTCAGACACCGAAGAACTTCCAAC
AATCATCTATGTTTTAGAGGGGTAGAGCAGGGTAGATACCCATCTCCCAC
CAATCACATTTCGATTGTCAGACATTTTGTAAGGCAGAGACAGATGATTC
GATGGGCACGACGCTCGTCGGGGAGAATCCCCGAAATCCTCTTGAAGGAC
GCAGCACAGCAGTACCACACACACCACGTAGACAACATACGAGACAATCA
GCACAGCAGCACACGAGGATGCTGTGGGCCAAGGGCAGCCAAAGGCACAC
ATCATAGGAGGCGTTCCCTATGACCCTTACAGCCCGTTGCCTGCTGTCGG
CAGCACAAGCGAGTGACGACACAAGTCAATCTGCGGTCCGTCTACGTCAT
CCTCTATCTACCGATCTTTGGAGCTTCCCACCCAGACGCATCCCCACAAC
AGAGACAACGAGACGTACACACTGCTGTAGGTCAAGGCCGGCCAAAGGCA
CACATCGGCTGGCGTCGGAAGCTATTTTTAGAGCCCGAGGCCAGCTGCTA
GCAGCGTAAGCGAGGGAACATGCGAGTGCACACACGTCAAATCTGTCTGC
GGTGTCTTCGTCTGCAGGCCGATCTTTGCGTCCACAACAGACGCACCCCT
GAAACAGAGACAAGTGAGACGTACACAACGCTGTAGGCCAAGGGCGGCCA
AATACAAATACACACATCGTAGGAGGCGTCGGAGCGATTTTTAGAGCCCG
TTGCCCGCTGCGAAGCGAGGAAAGCAAATGCACACCCATGCACAGCAGCA
GCAGAAACAACAGCAGCTGCTGCAGCTACATGCGCTCTCATTCATCCCCT
GACTGACTGGTGGTGTCGGGTGAGGTGTGAGCGTGTGCACTGGTGACCTT
TGTGGTGGCGTAGGCTCCATCCATATCTATCGAAGCTTGCTTTGGTGTCT
CTCTCCGCCCCTTCTATTGGCGCTTCGCGCGGAATAATTTAGACCCCCGT
GTATGGGAGGTGAGCCGAATCGTAGGAGTTCGATGCCTCTCCCACGCAAA
CCTGAACCTTCGGTCAATCTTTTTTTCTGGCGCCCATTTTTGGTATGCCT
ATCTTTACGCTTCCTGATTTTTAACTATTAACTGCTGTCTGTCTGTGTAA
TACGTAGTGTGTGTGCTAACTTCTGCTGTGTACGTGCGAAGTCGATAGTA
TTCGTTACGCGATGACTCGCCGTCCCCAGAGTATCTGCGAGGATATGCTG
AATCACAGCTAACATAATTTTTTTCACCATCATCCATGTACATATCTCTA
CGGAAAAGGAAGTGGGCAATGGGCCGATGACTGACTCCCTCTTACGTGCA
CTTCGCAGTACTCGAGTGTTTGTTTTTTGGTGTTTTCCTTGCCCAGTTTT
TACTTGTTTGTTCTTTTTTTTTGCCAGGTTCGATCGGCATCATGTACCTA
CCATACAGCTGTTTCTCTCTCTCTCGTTGATGCAGTAGCAGGCCACCGTC
AGAATTGAATTGAACAAACGGTTGCCAGTTTCATAAATGCCTATCTATAT
GCTTCCTCATTCTTCTGTAACTTCTGTCTGTCTGTGTAATATGTAGTGCT
TGCTAAGTACTGCTGTGTACGTACGAAGTCGATAGTATTCGTTACGCGAT
GACTCGCCGTCCCCAGAGTATCTGCGAGGATATACTGAATCACAGCTAAG
ATACGTTTTTTCACTATCATCCATGTAGTCATATCTCTAAAGAAAAGGAA
GTGGCCGATGGGATGACTGACTCCCTCTTACGTGCACTTCGAAGTACTCG
AGTGTTTATTTTTTGGGGCTTTTTTTCCTTGCCCAGCTTTTACTTTTTCG
TTCTCTTTTTTGTTCTTTTCCTTGTTTGTTCCTTTTTTTGGCCAGGTTCG
ATATGCTCGGCATCATGTCCCTACCATGTACGAAGTAGCTGTTTCTCTCT
CTCGTCCATGCAGTAGCAGGCCACCGTAATAATTGAATTTGAACGAACGG
TTTCCAGTTTCATAAATGCCCGTGCTGTCGAGCGTAGGGAAAGAAGAGTA
GCTGGTGCTCGCATCGATTGAACCTTTGAAAACTGCCGATCCTCCCAAAC
CGCATCGTTCTAAACAGGGGCAGCCGCTGCTGTACTGGCCAAGCCGAGCG
GTGCGTTCGCCGCCGCAGGCAAAGTCAACAAGCCGCTGGGACAGGAATCA
TTCCGGAGGATCAGGGATGCAAGGCAGCAGTTGGACTCGGTGGACGTACC
CCTTCGATCACGAAAATTCGAAGAAGTGCAGGTACGATTTTGCAGCACCT
CTCATGAGGAGATATGGTGCTGACCGACGACAGCATTTTGTTCATGCACC
CACAGCAGTACGGATATTGGAAGGTTCTTGAGCGGAGACCAGAACGGTGC
TAAATGTGAAGAAAATAACAACAACAACCACAACAACAATCACAGCCCAC
TTGTTTGTTTTTGATGCGTGTTGAATATCATTTCGTCACTGCGTGCAGGA
AGTATTGGACAGCGGTGCGACCGCGGATCTCGAAGCATCGCTGGTGGGCC
TAGTCAAGTCCAACTCATTGCCGGCTGACGACAGGCTTGCCGTGGGCACT
ATTCGAAGGTGTATTTGCAGTTGCTTTTGGTCGATATGTAGCCCCCTTTG
CGGTGTGCCTATGCCGTTGCAGGATCAGCCCTGTTCGTCCGCGACCTACA
GCAATACATCCACTTTGATGCGATGCTTCTTGTGTGGATAGACACGATGC
CCCAACAAGCGCAATGTAGCATGTTGTCATTTTATTTATTTTTCACCGGC
GTTGGTGTGTTAACCGTCCCACCTTCATCGAAATATAGAATCACGTGTGA
GGTTGACCTCTTAAAAAGTCAGCAGTGTGTCCCGACAGGCGGACACCGGC
ACGATACATACGCGCTAAACACCAACACCTGCGAGTCTTCTTTTCTTTCA
CCTTGCCCGCTGCTGTGACCGCGACAAGCGACTCCAAGGTTTCCTTGGTC
TCGACATGAGTTGGGCTGAAAAAAGAGTTGACGCTAATTATTTTTTTTTC
CCAGGTACGGACTCGCCGCGGACGCGCTGATAGCGCTCGGCGGGCTCTCA
GCTGCGGCCCGCGACGGGGACGGTGGGGAGGCCCGCCGGATGCTCACGCT
AACCAAGGAATCGCTCAATGATATCCTCACGATTGGGGTCAACAACGACC
TCAACAAAACGAACTGATTAGACAGACTGGGCAGCAACCCCGTGTTGTTT
GTCGATGTACGATGGTTTGGGGCTTGCCCCTGTGTGATTACGGACATTTT
TTCTTTCGTGCATCAGTCCAGGACTGCTGCTGTGTCTCACAAGAGAGAGG
GATCTACTGTACTTGGCGCCGAAAAGGATCTTCGCTGCACTGCTGTTTTT
TGTGTTTCCCGCCGGCTTAACGGGGATTGCTACGTAGGCCGTAGGTGTTT
TGCGCCTACAGCAACAGCCCGAAGGAGTTGGTACGGTGGGCCTGTTGATG
TGTACAAATAAATGTCGCTCGAGTGGAACAGAGAAATTAGTTACAAATAA
TTCAT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig87:482245..486499- >mRNA_E-siliculosus-1a_M_contig87.16754.1 ID=mRNA_E-siliculosus-1a_M_contig87.16754.1|Name=mRNA_E-siliculosus-1a_M_contig87.16754.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=240bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:482245..486499- (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGCAAGGCAGCAGTTGGACTCGGTGGACGTACCCCTTCGATCACGAAAA TTCGAAGAAGTGCAGATGCAAGGCAGCAGTTGGACTCGGTGGACGTACCC CTTCGATCACGAAAATTCGAAGAAGTGCAGGAAGTATTGGACAGCGGTGC GACCGCGGATCTCGAAGCATCGCTGGTGGGCCTAGGAAGTATTGGACAGC GGTGCGACCGCGGATCTCGAAGCATCGCTGGTGGGCCTAG back to top
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