mRNA_E-siliculosus-1a_M_contig87.16719.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig87.16719.1 vs. uniprot
Match: A0A6H5JKM2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKM2_9PHAE) HSP 1 Score: 1144 bits (2959), Expect = 0.000e+0 Identity = 686/878 (78.13%), Postives = 714/878 (81.32%), Query Frame = 1
Query: 634 IYVANRARIDSKAVKAVVDYASKQAAAGTDKLLLAASGAASPALLLMGVN-TTETQAALNNSVQLLSMGIVPDSISLSPKLLTSLKDFDDDDKRLDAAYQR---------------------------------------------------------------QRRRRSKPLPARLLGSLPSTINKASDLAYEVEQEV--------------------------------------------KYERAGSRANKLLKPIGLSLPEAKRNGLLLGRTPSGSAGKLLEASDASLTANSSPSRILGSRRLEKTPAVVEPLVQEVSARREAMPPAPDPVGVFDRFERKGVDAQGGEISSTEHSLAEVLASQPDVFTKQLSKCIDSIGDEVQVQERGVRAANAVLCSTEPVIAGLEEALEREAVLLEELKNVTRNVQQMYVLAEXXXXXXXXXXXXXXXXXXXXXXXELAVYLEAYIGGETAR-------------------IERLETIKSRVLEIRGLGGIQDSSRAAQVELSSRTIGFLQSFDAEVVAGHGEAKAVGGRLDVVWRESAERARDEAGHAHEYALVAACRLWKAAAVEGTGKRANTLDSVRLELTRTQEIQDSTTSTMGVPSKVGREEFARATGAEVRAGEGDRERLRAVKDEAARDTEGGDQQASVAPVERGVTAAPAPSFPVRPQADHDIKLTPPMTASPDITPLAGESTTVQTTEAEMLVDLDQSVKSAEVVDAVVVDEAPVRGDSAATPLDENTSRRSGDGALSRKGSLSAERTTMASEESNIELVVDESSSFVDVEVEMQDDVSDPARVGLKFLDVFALLIEKVIFVGIPTLVSGGSLVWQRVDNAVNGAKGRKGWKLLDRLKKDSAG 2886
IYVANR RIDSKAVKAVVDYASKQAAAGT KLLLAASGA SPALLLMGVN TTETQAALNNSVQLLSMGIVPDSISLSPKLL SLKDFDDDDKRLDAAYQR QRRRRSKPLPARLLGSLPSTINKASDLAYEVEQEV KYERAGSRANKLL+PIGLSLPEAKRNGLLLGRTPSGSAGK+LEASDASL AN SPSRILGSRRLE TPAVVEP +QEVSARRE MPP PD VGVFDRF RKGVDA+GGE+SSTE +LAE+LASQPDVFTKQLSKCIDSIGDEVQ+QERG+RAANAVLCSTEPVIAGLEEALEREAVLLEELKNVTRNVQQ YVLAE XXXXXXXXXXXXXXXXXXXX ELAVYLEAYIGGETAR IERLETIKSR+L+ RGLGGIQDSSRAAQVELSSRTIG LQ FD EVVAGH EAKAVGGRLDV+WRESAERARDEAG AHEYALVAACRLWKAAAVEG+GKRA+TLDSVRLELTR Q+IQDSTTSTMGVP KVGREEFARATGAEVRA EGDRERLRAVKDEAARDTEGGDQQASV+PVERGVTAAPAPSFP R QADH +KLTPPMT +PDITP+AGESTTVQT EAEM+VDLDQSVKSAEVVDAVVVDEA VRG SAAT LDEN+SRRSGDG LSRKG LSAERTT+ASEES+IELVVD+SSSFVDVE EM+DDVSDPARVGLKFLDVFALLIEKV+FVG+PTLVSGGSLVWQR+DNAVNGAKGRKGWKLLDRLKKDSAG
Sbjct: 7 IYVANRPRIDSKAVKAVVDYASKQAAAGTGKLLLAASGAGSPALLLMGVNNTTETQAALNNSVQLLSMGIVPDSISLSPKLLASLKDFDDDDKRLDAAYQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGQTGNRAARRRQSSFRLQLQRRRRSKPLPARLLGSLPSTINKASDLAYEVEQEVRPLRSLSRRFSARTKAKLESGLKPPTHSLLHEQHYVRLFAAVQVKYERAGSRANKLLRPIGLSLPEAKRNGLLLGRTPSGSAGKILEASDASLAANPSPSRILGSRRLETTPAVVEPPIQEVSARREVMPPLPDLVGVFDRFGRKGVDARGGELSSTERALAEMLASQPDVFTKQLSKCIDSIGDEVQMQERGLRAANAVLCSTEPVIAGLEEALEREAVLLEELKNVTRNVQQTYVLAEMXXXXXXXXXXXXXXXXXXXXVVELAVYLEAYIGGETARHGEYSSRLNLKSRSSVTNLIERLETIKSRMLQTRGLGGIQDSSRAAQVELSSRTIGLLQYFDGEVVAGHEEAKAVGGRLDVIWRESAERARDEAGRAHEYALVAACRLWKAAAVEGSGKRASTLDSVRLELTRIQDIQDSTTSTMGVPRKVGREEFARATGAEVRAREGDRERLRAVKDEAARDTEGGDQQASVSPVERGVTAAPAPSFPGRSQADHGVKLTPPMTTTPDITPVAGESTTVQTPEAEMVVDLDQSVKSAEVVDAVVVDEASVRGGSAATSLDENSSRRSGDGGLSRKGFLSAERTTIASEESSIELVVDKSSSFVDVEAEMEDDVSDPARVGLKFLDVFALLIEKVLFVGLPTLVSGGSLVWQRLDNAVNGAKGRKGWKLLDRLKKDSAG 884
BLAST of mRNA_E-siliculosus-1a_M_contig87.16719.1 vs. uniprot
Match: A0A835Z0K6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K6_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.580e-19 Identity = 96/300 (32.00%), Postives = 145/300 (48.33%), Query Frame = 1
Query: 328 QLSDLDARVIDELLRDPAFLDSILEQEVRLGGEGADEGGGGMAANSTVSVGNSSSRALAKAGEIPSSYSSDYDSVTMQVVEELQLSVKGILAKVSAAFESAGIYVANRARIDSKAVKAVVDYASKQAAAGTDKLLLAASGAASPALLLMGV-NTTETQAA------------LNNSVQLLSMGIVP----DSISLSPKLLTSLKDFDDDDKRLDAAYQRQRRRRSKPLP------------------ARLLGSLPSTINKASDLAYEVEQEVKYERAGSRANKLLKPIGLSLPEAKRNGL 1122
+LSD+DA V+ EL++D F+ S+ +E G + G+ + G A A AGE Y S T Q+ E L L +AKV AA E+A I + N+ ++D V V + ++A + L AA+ AA P +LL N T L LL +G+ P ++ +P+LL + K F+D+D RL AAY R +R+R+ LP +LLG+LP+ + A DLAY VEQEV+YE+ G R ++L+ +G+ L A ++ L
Sbjct: 209 RLSDIDAAVLRELMQDQEFMSSVAMKE------GLKQQLDGLQDEYAAAAGGKG--AGAAAGE--------YSSATFQIFEGLSLGWGTFVAKVGAAVETAAIAIQNKVQVDINTVLGVTNAIVQRATYDARRTLAAAATAARPDMLLAPARNVTRXXXXXXXXXXXXPALDLGLGFTLLQLGVNPFEEVNAGGAAPELLDAFKGFEDEDARLRAAYARGKRKRNASLPEASSAAPRFSVSRQTAEACKLLGALPAAVGAADDLAYAVEQEVRYEKPGRRTTQVLRRVGIPLSGAAQSAL 492 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig87.16719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig87.16719.1 >prot_E-siliculosus-1a_M_contig87.16719.1 ID=prot_E-siliculosus-1a_M_contig87.16719.1|Name=mRNA_E-siliculosus-1a_M_contig87.16719.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=923bp MRKGKLIVLVGLASLDWAGGFLHVVQVPSSRGNSARVGIPPRCVDACRAAback to top mRNA from alignment at E-siliculosus-1a_M_contig87:129931..137874+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig87.16719.1 ID=mRNA_E-siliculosus-1a_M_contig87.16719.1|Name=mRNA_E-siliculosus-1a_M_contig87.16719.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7944bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:129931..137874+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig87:129931..137874+ >mRNA_E-siliculosus-1a_M_contig87.16719.1 ID=mRNA_E-siliculosus-1a_M_contig87.16719.1|Name=mRNA_E-siliculosus-1a_M_contig87.16719.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5538bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig87:129931..137874+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |