mRNA_E-siliculosus-1a_M_contig86.16693.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16693.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16693.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16693.1 vs. uniprot
Match: D8LLF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLF5_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 6.240e-93
Identity = 182/192 (94.79%), Postives = 185/192 (96.35%), Query Frame = 1 
Query:  322 RTDPYGRLCWQHRKTGQVTYGTSYALHQQGYNTGLAAKGFDSDXXXXXXXXXXXXXXXXXXXPVPALAPVAVVPPPQPYMQQPQYGISPVPQQYYGHSPVPYGVSPVAMYPAAPWNAMPASPVPVQVPEYIKRQ------AKXXXXXXXXXXXXXXXXXIAAGVWEKLYTRDGGKFWQHSVTGETSKTDPYY 879
            RTDPYGRLCWQHR+TGQVTYGTSYALHQQGYNTGLAAKGFDSDXXXXXXXXXXXXXXXXXX PVPALAPVAVVPPPQPYMQQPQYGISPVP+QYYGHSPVPYG+SPVAMYPAAPWNAMPASPVPVQVPEYIKRQ      AKXXXXXXXXXXXXXXXXXIAAGVWEKLYTRDGGKFWQHSVTGETSKTDPYY
Sbjct:   51 RTDPYGRLCWQHRQTGQVTYGTSYALHQQGYNTGLAAKGFDSDXXXXXXXXXXXXXXXXXX-PVPALAPVAVVPPPQPYMQQPQYGISPVPRQYYGHSPVPYGMSPVAMYPAAPWNAMPASPVPVQVPEYIKRQHAEALKAKXXXXXXXXXXXXXXXXXIAAGVWEKLYTRDGGKFWQHSVTGETSKTDPYY 241
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16693.1 vs. uniprot
Match: A0A6H5KIW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIW0_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.380e-62
Identity = 146/157 (92.99%), Postives = 148/157 (94.27%), Query Frame = 1 
Query:  427 AAKGFDSDXXXXXXXXXXXXXXXXXXXPVPALAPVAVVPPPQPYMQQPQYGISPVPQQYYGHSPVPYGVSPVAMYPAAPWNAMPASPVPVQVPEYIKRQ------AKXXXXXXXXXXXXXXXXXIAAGVWEKLYTRDGGKFWQHSVTGETSKTDPYY 879
            AAKGFDSDXXXXXXXXXXXXXXXXXX PVPALAPVA+VPPPQPYMQQPQYGISPVPQQYYGHSPVPYGVSPVAMYPAAPW+AMPASPVPVQVPEYIKRQ      AKXXXXXXXXXXXXXXXXXIAAG WEKLYTRDGGKFWQHSVTGE SKTDPYY
Sbjct:   27 AAKGFDSDXXXXXXXXXXXXXXXXXX-PVPALAPVALVPPPQPYMQQPQYGISPVPQQYYGHSPVPYGVSPVAMYPAAPWSAMPASPVPVQVPEYIKRQHAEALKAKXXXXXXXXXXXXXXXXXIAAGAWEKLYTRDGGKFWQHSVTGEISKTDPYY 182
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLF5_ECTSI6.240e-9394.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIW0_9PHAE1.380e-6292.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:631312..635244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size882
Model size882
Exons3
Ec32 orthologEc-27_002450.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16693.1prot_E-siliculosus-1a_M_contig86.16693.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 631312..635244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936319.7440345-CDS-E-siliculosus-1a_M_contig86:631311..6316611622936319.7440345-CDS-E-siliculosus-1a_M_contig86:631311..631661Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 631312..631661 +
1696251023.616172-CDS-E-siliculosus-1a_M_contig86:631311..6316611696251023.616172-CDS-E-siliculosus-1a_M_contig86:631311..631661Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 631312..631661 +
1622936319.7705042-CDS-E-siliculosus-1a_M_contig86:633951..6343241622936319.7705042-CDS-E-siliculosus-1a_M_contig86:633951..634324Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 633952..634324 +
1696251023.6264205-CDS-E-siliculosus-1a_M_contig86:633951..6343241696251023.6264205-CDS-E-siliculosus-1a_M_contig86:633951..634324Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 633952..634324 +
1622936319.8605895-CDS-E-siliculosus-1a_M_contig86:635085..6352441622936319.8605895-CDS-E-siliculosus-1a_M_contig86:635085..635244Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 635086..635244 +
1696251023.6414828-CDS-E-siliculosus-1a_M_contig86:635085..6352441696251023.6414828-CDS-E-siliculosus-1a_M_contig86:635085..635244Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 635086..635244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16693.1

>prot_E-siliculosus-1a_M_contig86.16693.1 ID=prot_E-siliculosus-1a_M_contig86.16693.1|Name=mRNA_E-siliculosus-1a_M_contig86.16693.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=294bp
MSKFIKRRNRPSFEPKADKKGGSAAGLFFQLQAFHQQTDNSSSRQVDFDF
FVRTKRDYVVVCTRLCMYNLAPRPTLVPRGTETKKEETKKAEESSEDEEE
TEQQWEQRTDPYGRLCWQHRKTGQVTYGTSYALHQQGYNTGLAAKGFDSD
DDDDDDKKPAAAAAAAAAAPVPALAPVAVVPPPQPYMQQPQYGISPVPQQ
YYGHSPVPYGVSPVAMYPAAPWNAMPASPVPVQVPEYIKRQAKKKKEEEE
KKKKAAEKKKIAAGVWEKLYTRDGGKFWQHSVTGETSKTDPYY*
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mRNA from alignment at E-siliculosus-1a_M_contig86:631312..635244+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16693.1 ID=mRNA_E-siliculosus-1a_M_contig86.16693.1|Name=mRNA_E-siliculosus-1a_M_contig86.16693.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3933bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:631312..635244+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTAAGTTCATCAAGAGGAGGAACCGGCCTTCGTTCGAGCCGAAGGC
CGACAAGAAAGGTGGGAGCGCGGCTGGCCTTTTTTTCCAACTTCAAGCTT
TTCACCAGCAGACAGACAACAGCAGCAGCAGGCAGGTAGATTTTGATTTC
TTCGTGCGAACGAAGCGAGACTATGTTGTTGTTTGCACGAGACTATGCAT
GTATAATCTTGCACCACGCCCCACCCTTGTTCCCCGCGGCACAGAGACCA
AGAAGGAGGAGACCAAGAAAGCAGAGGAATCGTCAGAGGATGAAGAGGAA
ACGGAGCAGCAGTGGGAGCAGAGGACGGATCCTTACGGGCGCCTGTGTTG
GTGAGGTTGCGCATTCTTGTGTTTTTTTTGTGGGTGAAAAATGTGGAGCC
TCAGAGTATCCACAGCAGTCTATACCCACAGGCAGCTATCCCCCTGTGTC
AGGCCGTGTGTAAAGGCGGACTATGTATATCGGCAGACGCCACTAGGAGC
GCGGTCCTTTCTCTGGTTTAGTGTGTGCGCGCTTTCCGATCTCTGGCCCT
TACATGGCCGTCACCTACTCTGTACTCTATTACTCCGTGGGTAGGTGTTC
ACGAACAATAAATTATTTTCCGCTGAGTTGCGGATGGTGTATGCAACGGA
CCTGTGTGCAAGAGTTTTCGTTGTTCCTTGCCGTTTCGTCGTGTTTGCGT
CCGCCTGCAGAGTTACATCGACGAACCTTGTACAGAGCGCTTGATGACGC
GCGATGTCGTACCGCTGCACTGCTGTACGACTGGCCTCACCAGTCGTTTT
ACAAAAAAAGCTGTGGGACAAGGATGCGGAGCTTTTTTTTCTCTCCGCAA
AGACAACAACAACAACACAACCATGCACCCTTACATGGTTGTCCCTCTTC
CGTTGTTGTTGATCCTGTCGCATCACCCGCCGCTCCTGAGGCTCGTTCGT
CTGTATCTACGAAGGGGGGCCAGGCAGCGCGCAGAAACGCGGACTGTTGA
TTCCTCTGCAATGCACTAATAGCAGTGGTAGAGAAACACCAGACGTTGTT
GTGAAACGGCGCCCTAGACGACGTGTGGAACAACACACGAGAGAAATAGT
ACACGAGAGCTTTTATGCGAAGAAATCGTCTTGTTGATTTAGTACAATGT
TGGTGTCGGGGGATCGCTGGCGTTCCACAAAACTCCCGTCAAATGGAAGT
GTAGTTGTCCCCCCCCGCCCTCATCAATTATTGGGTTAACAATTTGACAT
GACTCCAAGGAGGAAGTTGAGGAGGAGAAACAGGAAGGCAGTTATCGAAC
CCACCGAACGACTGACTGCTGTGTCTCAGTGCGTGTGCACAAGCTTGTTA
AGTCGCAGCTACGAAAGATTCGTGCATGCTGTCGTTTGAACGAGGGCGCG
ATTCGCACCCGCCCATTCCGTCCCATTTTCTTCCCGGCGGCGGGCGAAGT
TGGGAGCCTGCGTGTGGTTTTTCCGTTATCGTGAGGCTTCATCATGAAGC
CCCGATCGGTGGCCGATGGGCGACTTGACAAACACATCCAGGAAGGAAAG
GTGCCCTCAGCAACTACGTAACACGTAGAAGTAGCCCCCTTGCGTTCTTT
CATGACCACGAGGGAGGGACCAGCTGCCGCACACCACTTTTTTTACCCTC
CTCTCCAAGACCAGGCGGCACAGCAGCAGTAATGCCTGCTTGTGTCATGT
CTCCCCAAGAAAATACCCCCCCCAAGAAAATAACAGCAAGAGTTTGCACG
TAGACGTGAAGAAGATCGCGAGACATGATCTACATGTGGGCATTTATGGA
CAGACCAAAGAGAGCAGAGAGCACGAAGCTCTTCAATATTTCGACCGAAA
GGCAGTGGATAGATAGGCGATAGATGCGAGAGCTAAGGTGAGTGCCGACG
TTTTCAAGCACGGTCAAATATCGGTGCGAGATGTTTATTTGTAACTGCCA
CTGCAACTTGCACTTATGGCGCATGAACCGTCCATGGTTTCACGCACACA
CCCGACCCTGCAGCTTTCATTTTTTGGTCCCCACACGTCTGTCTCGGGTG
CTAGCCATTTACCAAACTGGGTTTTGCCCTCAACATTTCCGCGTGTTTGC
CGTACGGCCTTTTTGCCTAGTTGCAACGAACGTGCGACGCGGGGATCGTG
GCCGGTTCACACACAACGGAGGGCCTTCTCTCTTTCGTCTCCCCGAGGCA
CGCTCAACCATTGCTTCTCGGCTGTGCTGGCTCGCGCCGTTGTTTCACGC
CCGTGTCGTCTACCCCCCCCCCCACCCTGTCCTCCCCTTCCGTCCATGCC
CGAATCGTGGAGCTCGAGACTCGTACACCCTACCGACGAGAACGCCCGAA
CTTCAACGTTACGTATACTATGCATACGACATCCAGCTACATGCTCAGAA
ACTGTTTGTGGACGCGTGTAAGACAGAGATTGTTCCACCAACGACGACGA
CTGCTGAGAGCGCGTTTTGGAGCGCACAACCTTTGCAACAAAAGCGGTAC
ATCGGTAAAAAAAACTGAAACACGAGCCAGAAGAACAAGACGTTCGTTTC
CAACAACCGTCATCAGACGACTCCCCTTCCCCCCGAAATTCGCTCACCCC
CCCCCCCGCCCCCCGCCTCCCCCCTTCAAACCATCAACAGGCAGCACCGC
AAAACCGGGCAGGTTACCTACGGCACCAGCTACGCCCTCCACCAGCAGGG
CTACAACACCGGCCTAGCGGCGAAGGGCTTCGACTCGGACGATGACGACG
ATGACGACAAGAAGCCGGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCCT
GTCCCCGCCCTTGCTCCGGTGGCCGTGGTGCCGCCGCCGCAACCGTACAT
GCAGCAGCCCCAGTACGGGATATCGCCGGTGCCCCAGCAGTACTACGGCC
ACTCGCCTGTGCCGTACGGGGTGTCGCCGGTGGCCATGTACCCGGCAGCG
CCCTGGAACGCTATGCCGGCGTCTCCCGTGCCGGTCCAGGTGCCGGAGTA
CATCAAGCGGCAGGTGAGTAAGAGGGAGCCCGCGGGCGGGGGGGGGGGGG
GGGAGAGAGAGAAGGGGGAGCAAGAAAAATATACTCCGGAGTATAGAGAA
ATAGAGGCGCAGAGAGAGAGAGGAACCGCCTTGCGAGAGATAATGTTCAT
TCATTATTTATAGAGAGGAAATAAATAGCACAGGAAGGGGGCGCGCAGAC
CCCACACCCTAGCCCAACTCCCCAATTGCATCCTTTCTCCAACACGTTTA
CTTAGGACGAACTACATAGCCTGCTACCGAAAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGGGAGTGAGACAGAGAGACAGAGAGAGAAG
AGAGAGATATATCCCAGCCAGAAGCACCCCAAAACATTGTGCCAAGTTGG
AGTGGATCGGGCAACGGGTGTGGAGTTTTCGTCCGCTAGTACCGTTTTGT
GCTCGCGGCCTTGCGCTAGTTGTGCGCACTGCCTCTCACGATCACGGTGC
AAGCCTGTGCTTGTATCTCCCGTTGCTTGAAACGCTGAGGCACAGGGGAT
CCGCGACGAGTCCTTCTGTATATTGGTTCCCTTTTTCCTTCCCTTTGAAC
CTTCTGTATGCCTCCTCCAATTCTTTGTCACTCAAACGTGCTTTTTTCAA
ACCCGGTTACTAGAGCAGCAGCACCCGGTTGTTCACGCAAACCAAACACG
TCGCTTTGGCCTGCGTTGTCCCGTCTCGCCAAAAATAAAAAAATACTTCT
CCGCAGCACGCCGAGGCCCTCAAGGCAAAGAAGAAGAAGGAGGAGGAGGA
GAAGAAGAAGAAGGCGGCGGAAAAGAAGAAGATCGCCGCGGGGGTGTGGG
AGAAGTTGTACACCAGGGACGGCGGGAAGTTCTGGCAGCACTCGGTCACC
GGAGAGACCTCCAAGACCGACCCCTACTACTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:631312..635244+

>mRNA_E-siliculosus-1a_M_contig86.16693.1 ID=mRNA_E-siliculosus-1a_M_contig86.16693.1|Name=mRNA_E-siliculosus-1a_M_contig86.16693.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1764bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:631312..635244+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCTAAGTTCATCAAGAGGAGGAACCGGCCTTCGTTCGAGCCGAAGGC
CGACAAGAAAGGTGGGAGCGCGGCTGGCCTTTTTTTCCAACTTCAAGCTT
TTCACCAGCAGACAGACAACAGCAGCAGCAGGCAGGTAGATTTTGATTTC
TTCGTGCGAACGAAGCGAGACTATGTTGTTGTTTGCACGAGACTATGCAT
GTATAATCTTGCACCACGCCCCACCCTTGTTCCCCGCGGCACAGAGACCA
AGAAGGAGGAGACCAAGAAAGCAGAGGAATCGTCAGAGGATGAAGAGGAA
ACGGAGCAGCAGTGGGAGCAGAGGACGGATCCTTACGGGCGCCTGTGTTG
ATGTCTAAGTTCATCAAGAGGAGGAACCGGCCTTCGTTCGAGCCGAAGGC
CGACAAGAAAGGTGGGAGCGCGGCTGGCCTTTTTTTCCAACTTCAAGCTT
TTCACCAGCAGACAGACAACAGCAGCAGCAGGCAGGTAGATTTTGATTTC
TTCGTGCGAACGAAGCGAGACTATGTTGTTGTTTGCACGAGACTATGCAT
GTATAATCTTGCACCACGCCCCACCCTTGTTCCCCGCGGCACAGAGACCA
AGAAGGAGGAGACCAAGAAAGCAGAGGAATCGTCAGAGGATGAAGAGGAA
ACGGAGCAGCAGTGGGAGCAGAGGACGGATCCTTACGGGCGCCTGTGTTG
GCAGCACCGCAAAACCGGGCAGGTTACCTACGGCACCAGCTACGCCCTCC
ACCAGCAGGGCTACAACACCGGCCTAGCGGCGAAGGGCTTCGACTCGGAC
GATGACGACGATGACGACAAGAAGCCGGCGGCCGCCGCCGCCGCCGCCGC
CGCCGCCCCTGTCCCCGCCCTTGCTCCGGTGGCCGTGGTGCCGCCGCCGC
AACCGTACATGCAGCAGCCCCAGTACGGGATATCGCCGGTGCCCCAGCAG
TACTACGGCCACTCGCCTGTGCCGTACGGGGTGTCGCCGGTGGCCATGTA
CCCGGCAGCGCCCTGGAACGCTATGCCGGCGTCTCCCGTGCCGGTCCAGG
TGCCGGAGTACATCAAGCGGCAGGCAGCACCGCAAAACCGGGCAGGTTAC
CTACGGCACCAGCTACGCCCTCCACCAGCAGGGCTACAACACCGGCCTAG
CGGCGAAGGGCTTCGACTCGGACGATGACGACGATGACGACAAGAAGCCG
GCGGCCGCCGCCGCCGCCGCCGCCGCCGCCCCTGTCCCCGCCCTTGCTCC
GGTGGCCGTGGTGCCGCCGCCGCAACCGTACATGCAGCAGCCCCAGTACG
GGATATCGCCGGTGCCCCAGCAGTACTACGGCCACTCGCCTGTGCCGTAC
GGGGTGTCGCCGGTGGCCATGTACCCGGCAGCGCCCTGGAACGCTATGCC
GGCGTCTCCCGTGCCGGTCCAGGTGCCGGAGTACATCAAGCGGCAGGCAA
AGAAGAAGAAGGAGGAGGAGGAGAAGAAGAAGAAGGCGGCGGAAAAGAAG
AAGATCGCCGCGGGGGTGTGGGAGAAGTTGTACACCAGGGACGGCGGGAA
GTTCTGGCAGCACTCGGTCACCGGAGAGACCTCCAAGACCGACCCCTACT
ACTGAGCAAAGAAGAAGAAGGAGGAGGAGGAGAAGAAGAAGAAGGCGGCG
GAAAAGAAGAAGATCGCCGCGGGGGTGTGGGAGAAGTTGTACACCAGGGA
CGGCGGGAAGTTCTGGCAGCACTCGGTCACCGGAGAGACCTCCAAGACCG
ACCCCTACTACTGA
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