mRNA_E-siliculosus-1a_M_contig86.16652.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16652.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16652.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16652.1 vs. uniprot
Match: A0A6H5L3P5_9PHAE (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P5_9PHAE)

HSP 1 Score: 568 bits (1463), Expect = 2.340e-191
Identity = 427/519 (82.27%), Postives = 431/519 (83.04%), Query Frame = 3 
Query:  357 MSEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQPARQRKPEESTGSRSSRKDSGXXXXXXXXXXXXXXXXXXXXXXXXXXTXTAPSXXXXXXXXXXXTRAVPRLQKAGTGAVKAASAAAA-PVALPAPAVDLLDFSEPAPPQAPXXXXXXXXXXXXXXXXXXXDQMFEFSDFQSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQQPAAQSAXXXXXXXXXAGAPGKASAASILSMFNSPAGGGVAGRSMAGPVGSSPVAGVMKTPELNQVSQMMSTLNVGGLAPMGSQQMGMPGAGGWAQQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQNTQGGLNAGASGGAMFGVGQAGGHQQHPQGMGAATNGSGLTGLRGGGDGAAQGNGATVVMPGGLXXGASGMGMGELR 1910
            M+EQALRKRLE LVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQV+GMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSR+PQPARQRKPEESTGSRSSR DSG        XXXXXXXXXXXXXXXXXX X AP XXXXXXXXX  TRAVPRLQKAGTGAVKAASAAAA P A+PAPAVDLLDFSEP PPQAPXXXXXXXXXXXXXXXXXX DQMFEFSDFQSAP                             VQQP  QS XXXXXXXX AGAPGKASAASILSMFNSPAGGG  GRSMAGPVGSSPV GVMKTPELNQVSQMMSTLNVGGLAPMGSQQMGMPGAGGW QQ XXXXXXXXXXXXX             XXXXXXXXXXXXXX  QQ   GG  AGASGGA  GVGQAGG QQHPQGM AA NGSGLTGLRGGGDGA QGN ATVVMP  LX GASGMGMG LR
Sbjct:    1 MTEQALRKRLEALVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVQGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRSPQPARQRKPEESTGSRSSRMDSGAASSKSPTXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXTTTRAVPRLQKAGTGAVKAASAAAAAPSAVPAPAVDLLDFSEPVPPQAPXXXXXXXXXXXXXXXXXXMDQMFEFSDFQSAPSSSPGATVPAAAALVGSQQQQQPAT----VQQPXXQS-XXXXXXXXAAGAPGKASAASILSMFNSPAGGGAVGRSMAGPVGSSPVTGVMKTPELNQVSQMMSTLNVGGLAPMGSQQMGMPGAGGWTQQQXXXXXXXXXXXXXWAQQQKLQQLLQQXXXXXXXXXXXXXXL-QQKIHGG--AGASGGAKSGVGQAGGDQQHPQGMDAAPNGSGLTGLRGGGDGATQGNXATVVMPXXLXAGASGMGMGGLR 511
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig86.16652.1 vs. uniprot
Match: D8LBT0_ECTSI (Arf-GAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT0_ECTSI)

HSP 1 Score: 476 bits (1226), Expect = 1.240e-157
Identity = 345/393 (87.79%), Postives = 346/393 (88.04%), Query Frame = 3 
Query:  357 MSEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQPARQRKPEESTGSRSSRKDSGXXXXXXXXXXXXXXXXXXXXXXXXXXTXTAPSXXXXXXXXXXXTRAVPRLQKAGTGAVKAASAAAAPVALP-----APAVDLLDFSEPAPPQAPXXXXXXXXXXXXXXXXXXXDQMFEFSDFQSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQQPAAQSAXXXXXXXXXAGAPGKASAASILSMFNSPAGGGVAGRSMAGPVGSSPVAGVMKTPELNQVSQMMSTLNVGGLAPMGSQQMGMP 1520
            MSEQALRKRLE LVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQPARQRKPEESTGSRSSRKDSG XXXXXXXXXXXXXXXXXXXXXXXXX X AP XXXXXXXXXX TRAVPRLQKAGTGAVKAAS              APAVDLLDFSEPAPPQAPXXXXXXXXXXXXXXXXXX DQMFEFSDFQSAP         XXXXX               VQQPA+QS XXXXXXXXX GAPGKASAASILSMFNSPAGGGVAGRSMAGPVGSSPVAGVMKTPELNQVSQMMSTLNVGGLAPMGSQQMGMP
Sbjct:    1 MSEQALRKRLEALVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQPARQRKPEESTGSRSSRKDSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPXXXXXXXXXXXTTRAVPRLQKAGTGAVKAASTXXXXXXXXXXXXXAPAVDLLDFSEPAPPQAPXXXXXXXXXXXXXXXXXXADQMFEFSDFQSAPSSSSGATVPXXXXXVGSQQQPAA------VQQPASQSGXXXXXXXXXXGAPGKASAASILSMFNSPAGGGVAGRSMAGPVGSSPVAGVMKTPELNQVSQMMSTLNVGGLAPMGSQQMGMP 387
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16652.1 vs. uniprot
Match: A0A836C8F7_9STRA (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8F7_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.020e-49
Identity = 87/125 (69.60%), Postives = 100/125 (80.00%), Query Frame = 3 
Query:  357 MSEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNP 731
            M+    +KRLE LVK  +NRFCADCG REPRWASVNLGLFICL CSGIHRNLGVHISFVRSVNLDTWK  QV  ME +GN RAKA++EA VP    VP E ++VRE +KWIR KYEH+R+++R P
Sbjct:    1 MTSPQDKKRLEALVKREDNRFCADCGCREPRWASVNLGLFICLGCSGIHRNLGVHISFVRSVNLDTWKTEQVDKMERIGNARAKAYYEANVPPGTPVPTESSSVRELDKWIRSKYEHKRYIARGP 125
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16652.1 vs. uniprot
Match: A0A7S3UXM8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXM8_HETAK)

HSP 1 Score: 178 bits (451), Expect = 3.140e-48
Identity = 82/128 (64.06%), Postives = 101/128 (78.91%), Query Frame = 3 
Query:  360 SEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQPAR 743
            SE+  ++RL  L K  EN+FC DCG REPRWAS  LG+F+C+ CSGIHRNLGVHISFVRSVNLD+W+   V+ ME  GN RA+A+FEAEVP++Y +P E +T RE EKWIRDKYEHRRF++R P P +
Sbjct:   15 SEEDHKRRLTALTKKDENKFCIDCGAREPRWASATLGVFMCIRCSGIHRNLGVHISFVRSVNLDSWREDHVQRMERWGNGRARAYFEAEVPSNYPIPGERSTTREVEKWIRDKYEHRRFLAREPPPGK 142
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16652.1 vs. uniprot
Match: A0A7S2UT74_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT74_9STRA)

HSP 1 Score: 176 bits (445), Expect = 3.500e-44
Identity = 81/124 (65.32%), Postives = 99/124 (79.84%), Query Frame = 3 
Query:  360 SEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNP 731
            S Q  + RLE +VK+G+N+FCADCG REPRWAS  LG+FIC+ CSGIHRNLGVHISFVRSVNLDTWK   V+ ME  GN RA  +FEA+VP +Y +P E ++ RE E+WIRDKYE+R+F +RNP
Sbjct:   15 SHQDHKVRLEAMVKSGDNKFCADCGAREPRWASATLGVFICIRCSGIHRNLGVHISFVRSVNLDTWKEDHVRKMEAWGNARAAEYFEADVPPNYRIPDEKSSTRELERWIRDKYEYRKFAARNP 138
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig86.16652.1 vs. uniprot
Match: G5A4X3_PHYSP (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A4X3_PHYSP)

HSP 1 Score: 166 bits (421), Expect = 4.300e-44
Identity = 75/120 (62.50%), Postives = 96/120 (80.00%), Query Frame = 3 
Query:  372 LRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNP 731
            L+K+L  L+K  EN+FCADCG R PRWAS+NLG+FIC+ CSGIHR+LGVH++FVRSVNLD+W   QV+ M+  GN RAKA++EA VP  Y +P EH++VRE+E WIR+KYE +RFV   P
Sbjct:   16 LKKQLNELMKLEENKFCADCGCRGPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTSEQVQQMQRWGNARAKAYYEANVPRDYRIPTEHSSVREKEMWIREKYERKRFVGEAP 135
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig86.16652.1 vs. uniprot
Match: A0A3F2RQV0_9STRA (Arf-GAP domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQV0_9STRA)

HSP 1 Score: 171 bits (434), Expect = 2.320e-43
Identity = 77/120 (64.17%), Postives = 98/120 (81.67%), Query Frame = 3 
Query:  372 LRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNP 731
            L+K+L  L+K  EN+FCADCG R PRWAS+NLG+FIC+ CSGIHR+LGVH++FVRSVNLD+W P QV+ M+  GN RAKA++EA VP  Y +P EHA+VRE+E WIR+KYE +RFV + P
Sbjct:   15 LKKKLNELMKLEENKFCADCGCRGPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTPEQVQQMQRWGNGRAKAYYEATVPRDYRIPTEHASVREKEMWIREKYERKRFVGQEP 134
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16652.1 vs. uniprot
Match: M4C531_HYAAE (Arf-GAP domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C531_HYAAE)

HSP 1 Score: 169 bits (429), Expect = 1.930e-42
Identity = 76/116 (65.52%), Postives = 96/116 (82.76%), Query Frame = 3 
Query:  372 LRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFV 719
            L+K+L  L+K  EN+FCADCG R PRWAS+NLG+FIC+ CSGIHR+LGVH++FVRSVNLD+W   QV+ M+  GN RAKAHFEA +P+ Y VP EH++VR++E WIRDKYE +RFV
Sbjct:   17 LKKQLNELMKREENKFCADCGSRGPRWASINLGVFICIACSGIHRSLGVHVTFVRSVNLDSWTTEQVQQMQRWGNARAKAHFEAALPSDYFVPSEHSSVRDKELWIRDKYERKRFV 132
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16652.1 vs. uniprot
Match: A0A225WQC6_9STRA (Arf-GAP domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WQC6_9STRA)

HSP 1 Score: 169 bits (427), Expect = 2.390e-42
Identity = 78/135 (57.78%), Postives = 101/135 (74.81%), Query Frame = 3 
Query:  342 RGIAVMSEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQPARQ 746
            R  A   +  L+K+L  L+K  EN+FCADCG R PRWAS+NLG+FIC+ CSGIHR+LGVH++FVRSVNLD+W P QV  M+  GN +AK ++EA VP  Y VP EH++VRE+E WIR+KYE +RFV   P+  R+
Sbjct:    3 RSKAPDDQTKLKKQLNELMKLEENKFCADCGCRGPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDSWTPEQVAQMQRWGNAKAKGYYEANVPRDYRVPTEHSSVREKEMWIREKYERKRFVGEAPREERE 137
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig86.16652.1 vs. uniprot
Match: A0A2D4C9N7_PYTIN (Arf-GAP domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9N7_PYTIN)

HSP 1 Score: 171 bits (432), Expect = 3.090e-42
Identity = 85/154 (55.19%), Postives = 108/154 (70.13%), Query Frame = 3 
Query:  336 NERGIAVMSEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHRNLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPREHATVREREKWIRDKYEHRRFVSRNPQPARQR-KPEESTGSRSSRKDS 794
            N  G     +  L+K L+ L K  EN+FCADCG R PRWAS+NLG+FIC+ CSGIHR+LGVH++FVRSVNLD W   QV  M++ GN RAKA++EA VP  Y +P EH++VRE+E WIRDKYE +RF +RN  P+ Q  + +   G RS R  S
Sbjct:    5 NAGGGGKDDQVKLKKILDELTKREENKFCADCGCRGPRWASINLGVFICIACSGIHRSLGVHLTFVRSVNLDAWTAEQVAQMQKWGNARAKAYYEAHVPRDYRIPNEHSSVREKEMWIRDKYERKRFAARNEPPSGQDDRDDHDDGERSRRTGS 158
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3P5_9PHAE2.340e-19182.27Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
D8LBT0_ECTSI1.240e-15787.79Arf-GAP domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836C8F7_9STRA1.020e-4969.60Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
A0A7S3UXM8_HETAK3.140e-4864.06Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2UT74_9STRA3.500e-4465.32Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
G5A4X3_PHYSP4.300e-4462.50Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
A0A3F2RQV0_9STRA2.320e-4364.17Arf-GAP domain-containing protein n=1 Tax=Phytopht... [more]
M4C531_HYAAE1.930e-4265.52Arf-GAP domain-containing protein n=1 Tax=Hyaloper... [more]
A0A225WQC6_9STRA2.390e-4257.78Arf-GAP domain-containing protein n=1 Tax=Phytopht... [more]
A0A2D4C9N7_PYTIN3.090e-4255.19Arf-GAP domain-containing protein n=1 Tax=Pythium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:320616..324819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1557
Model size2736
Exons6
Ec32 orthologEc-27_002820.1
Ec32 ortholog descriptionArf GTPase activating protein
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGsCOG5347@1,KOG0703@2759
EggNOG free text desc.GTPase activator activity
GOsGO:0000003,GO:0001558,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0007275,GO:0008150,GO:0009791,GO:0009838,GO:0009908,GO:0009987,GO:0010227,GO:0012505,GO:0016043,GO:0016192,GO:0022414,GO:0022607,GO:0030135,GO:0030136,GO:0030276,GO:0030308,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0034622,GO:0035459,GO:0035652,GO:0040008,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043933,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045926,GO:0048367,GO:0048437,GO:0048519,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060858,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0071840,GO:0090567,GO:0090630,GO:0097708,GO:0098791,GO:0099402
KEGG Pathwayko04144,map04144
KEGG koko:K12486
Preferred nameAGD15
Seed eggNOG ortholog2880.D8LBT0
Seed ortholog evalue8.5e-133
Seed ortholog score480.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16652.1prot_E-siliculosus-1a_M_contig86.16652.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 320972..323996 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936312.0114048-UTR-E-siliculosus-1a_M_contig86:320615..3209711622936312.0114048-UTR-E-siliculosus-1a_M_contig86:320615..320971Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 320616..320971 +
1696251020.1110148-UTR-E-siliculosus-1a_M_contig86:320615..3209711696251020.1110148-UTR-E-siliculosus-1a_M_contig86:320615..320971Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 320616..320971 +
1622936312.3038762-UTR-E-siliculosus-1a_M_contig86:323996..3248191622936312.3038762-UTR-E-siliculosus-1a_M_contig86:323996..324819Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 323997..324819 +
1696251020.1924615-UTR-E-siliculosus-1a_M_contig86:323996..3248191696251020.1924615-UTR-E-siliculosus-1a_M_contig86:323996..324819Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig86 323997..324819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936312.0257666-CDS-E-siliculosus-1a_M_contig86:320971..3210561622936312.0257666-CDS-E-siliculosus-1a_M_contig86:320971..321056Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 320972..321056 +
1696251020.1284025-CDS-E-siliculosus-1a_M_contig86:320971..3210561696251020.1284025-CDS-E-siliculosus-1a_M_contig86:320971..321056Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 320972..321056 +
1622936312.0440264-CDS-E-siliculosus-1a_M_contig86:321519..3216531622936312.0440264-CDS-E-siliculosus-1a_M_contig86:321519..321653Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 321520..321653 +
1696251020.1423452-CDS-E-siliculosus-1a_M_contig86:321519..3216531696251020.1423452-CDS-E-siliculosus-1a_M_contig86:321519..321653Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 321520..321653 +
1622936312.0843954-CDS-E-siliculosus-1a_M_contig86:321929..3221381622936312.0843954-CDS-E-siliculosus-1a_M_contig86:321929..322138Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 321930..322138 +
1696251020.1524987-CDS-E-siliculosus-1a_M_contig86:321929..3221381696251020.1524987-CDS-E-siliculosus-1a_M_contig86:321929..322138Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 321930..322138 +
1622936312.2106352-CDS-E-siliculosus-1a_M_contig86:322442..3229771622936312.2106352-CDS-E-siliculosus-1a_M_contig86:322442..322977Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 322443..322977 +
1696251020.162773-CDS-E-siliculosus-1a_M_contig86:322442..3229771696251020.162773-CDS-E-siliculosus-1a_M_contig86:322442..322977Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 322443..322977 +
1622936312.2688668-CDS-E-siliculosus-1a_M_contig86:323199..3234001622936312.2688668-CDS-E-siliculosus-1a_M_contig86:323199..323400Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 323200..323400 +
1696251020.1724575-CDS-E-siliculosus-1a_M_contig86:323199..3234001696251020.1724575-CDS-E-siliculosus-1a_M_contig86:323199..323400Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 323200..323400 +
1622936312.287612-CDS-E-siliculosus-1a_M_contig86:323603..3239961622936312.287612-CDS-E-siliculosus-1a_M_contig86:323603..323996Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 323604..323996 +
1696251020.1825402-CDS-E-siliculosus-1a_M_contig86:323603..3239961696251020.1825402-CDS-E-siliculosus-1a_M_contig86:323603..323996Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 323604..323996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16652.1

>prot_E-siliculosus-1a_M_contig86.16652.1 ID=prot_E-siliculosus-1a_M_contig86.16652.1|Name=mRNA_E-siliculosus-1a_M_contig86.16652.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=519bp
MSEQALRKRLETLVKTGENRFCADCGKREPRWASVNLGLFICLDCSGIHR
NLGVHISFVRSVNLDTWKPAQVKGMEEMGNERAKAHFEAEVPASYTVPRE
HATVREREKWIRDKYEHRRFVSRNPQPARQRKPEESTGSRSSRKDSGAAS
SKSPTGKTGSSSSSRAAGRTSSSTSTAPSPAASKATSSTTTRAVPRLQKA
GTGAVKAASAAAAPVALPAPAVDLLDFSEPAPPQAPPKASPPPSRATSAP
PPPPADQMFEFSDFQSAPSSSSSSGATVPSAAASVGSQQQQQQQPAAVQQ
PAAQSAQQGQQEQPAAGAPGKASAASILSMFNSPAGGGVAGRSMAGPVGS
SPVAGVMKTPELNQVSQMMSTLNVGGLAPMGSQQMGMPGAGGWAQQHQPQ
QAQAQAMAWAQQQKLQQLQQQQQLLLQRQQWQMQQQQQQQQNTQGGLNAG
ASGGAMFGVGQAGGHQQHPQGMGAATNGSGLTGLRGGGDGAAQGNGATVV
MPGGLGAGASGMGMGELR*
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mRNA from alignment at E-siliculosus-1a_M_contig86:320616..324819+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16652.1 ID=mRNA_E-siliculosus-1a_M_contig86.16652.1|Name=mRNA_E-siliculosus-1a_M_contig86.16652.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4204bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:320616..324819+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACCGTCCGTGACCCGTGACCCGCACCTCGAGCGAGCTGTTGAAGTGGCGA
ACGGCACTGGGGTCTGACAATCCAGCAGGTGCGCGAGCTTGTGTGCGCGA
TTCCCCAATTGTAGGCGGTCGAAGTCGGAGGTGCAGTAGCGTGCAAGGCA
AGACCTTTACAAGTGCTCGCCCCTTTCTTGTTTTCTATTGAACATTTTCG
ACGCTGCTGCTACTGCTGCTGTGGCTTCTTTTCGGCTCCTGCCCCACATC
ATCGTCAGAACGCATAAAGCACCCTTGGCTGTTCCTCCGCCTACCTATTG
AAGGTTTTGCAAGTCTCAACGGAGACAGAGAAGAGAACGAGAGAGGTATC
GCTGTCATGTCGGAACAGGCGCTCAGGAAGCGATTGGAGACCTTGGTCAA
GACTGGAGAGAACCGCTTCTGCGCCGACTGCGGCAAGAGAGGTAGTACAC
ACGTGCGGCCTAACCAACAGCAGTTCGTCGTGATCGGTCTGGTCTGTCTG
GCATGGGTGCAGCACAGAACCAGCAACAGCACGGAGTACACGATTGTCCC
CCTCGGCTCTGAAAGCCATGTCGTTGCTCTCTCTCCCTCTTTCTCTCCCG
CAGCTGCTCTGCACTGCTGTCCGGTTAGTTTGACAGGCATTCAGCCGCAA
ATGGTGTAGTCTGGCAGCGCATCCCTCCGATGAGGTGCACGCTTCAATTG
AGGCTCTTGGTATCAGCTAGAACACCGAAGTATAAGCCGGGACATCGTCT
AGACTTCGGCACACATCCCTCTCACTGCTGTCGACACGCTACTCGCTCGC
TGAGAACACGCTATTGTATGCTACATCAATGTAATCAATTTGAGAAATAT
TGCCTGTGAACGCCTTTTGCTCTTCTTCCCCAACGTCGGGCTGGTTGACA
CCAGAGCCCCGCTGGGCCTCCGTTAATCTCGGGCTGTTCATATGCTTGGA
TTGCTCTGGAATCCACCGCAACTTGGGGGTTCACATCTCGTTTGTTCGGA
GCGTCAACCTGGACACTTGGAAGCCGGCTCAAGTTAAGGTACGAGCGGGC
GGCGTTTGCTCTCTTGGCTTTCGTCCGAATTGAAGCCTAGCAATTTCAGT
GCTGCCCTTCCGGCGGGCTCCTTTTCATGATCGTGTTGCGTTGGCAAGGA
CTTCAAGAGAATCATGTACCGAGCCGGTACAAGGCTTGGCATCAAGCGGG
TTGAAAAATCGCGCGTTTCTCACGATGATGTTGTACCTGAACTACAACAC
TGCTGTACATTTAACGCGTGATGTGTTCGTCTACCCATGTTTTTTTTCGT
GGTGTTTTTTCCAGGGCATGGAAGAGATGGGAAACGAGCGCGCCAAGGCT
CACTTCGAGGCCGAAGTGCCGGCCAGCTACACCGTGCCGCGAGAACACGC
CACTGTCCGCGAGCGCGAGAAATGGATCCGTGACAAGTACGAGCACAGGC
GTTTCGTGTCGAGGAATCCTCAGCCTGCTCGGCAGCGGAAGCCGGAGGAG
TCTACCGGCTCACGATCTTCGAGGTGCGAGAGCAAGACGGAGAGGCAGGG
ACGAAGTCGGGGATAGAGCAAAAGCAAGCAGATCCCGCTGCTGGTAGGGT
TTTCGGTCATCCCTCTCGCTTGTCACGAACACGGTTATCAGATGCGATTT
CCTCGCCAAGGCCCGGCTGTCTTGACCGCCTGAAACAGCGCGCCAGAACG
AGCGCCGAGCATCGACCCGCCCCCGCAACCCACGAGCTCCTTCTCCTCCT
CGACGCTTGCGCAACCGACACCTTGGTCTCACCACGCCTCACCTTGCATT
GCCGAACAAAATCCCCAATAAAATCAGGAAGGACAGCGGCGCAGCCTCCT
CCAAGTCCCCCACGGGAAAGACCGGCAGCAGTAGCAGTAGCCGGGCGGCG
GGGCGAACATCGTCCTCGACCTCCACGGCGCCGTCACCGGCCGCTTCCAA
GGCTACATCATCTACCACCACCAGGGCCGTGCCCCGCCTCCAGAAGGCCG
GCACCGGGGCAGTGAAGGCCGCTTCTGCCGCCGCCGCGCCGGTCGCTCTC
CCCGCCCCTGCTGTCGATCTCCTCGACTTCTCCGAGCCGGCCCCGCCGCA
GGCGCCGCCAAAAGCGTCGCCGCCGCCGTCGAGGGCTACGTCGGCGCCGC
CACCGCCGCCGGCGGACCAGATGTTCGAGTTCTCGGATTTTCAGTCTGCG
CCTTCTTCGTCGTCGTCGTCGGGGGCGACGGTGCCGTCGGCAGCGGCGTC
GGTGGGATCCCAACAGCAGCAGCAGCAGCAGCCGGCCGCAGTGCAGCAAC
CGGCGGCGCAGTCTGCACAGCAAGGGCAGCAGGAGCAACCAGCGGCAGGT
GCCCCTGGGAAGGTATGTACGTTTTCGCTCCGCTTTGTAAACGGCAGCAA
AAATTGTTCGATCGCGAAGAGGTTTGGGTGTTTTGCTGCTGGCCACTGCT
GCCGTTTCTGCGGATGGTTTGCTCGTGGTCCTCTGCCCGATGTTTGTGTT
ATTTCTGGGTTCATCCATCCATGTCGTCCTCCTCCCCCCGACCTCGCCTG
CCGTCGACGCTCTCTTCGATTTTTGTTCTCGCAGGCATCCGCGGCGTCGA
TTTTGTCCATGTTTAACAGCCCCGCGGGCGGCGGCGTCGCGGGCCGCAGT
ATGGCGGGGCCTGTTGGTTCATCCCCTGTAGCAGGGGTTATGAAAACCCC
AGAGCTGAACCAAGTGTCGCAGATGATGTCGACGCTGAACGTCGGGGGCC
TCGCGCCGATGGGCTCCCAGCAGATGGGCATGCCGGTGCGTCTTTGCATG
TGGCCTGTTTTTGTCGCGCGAGAGCCATTTTTTTTTGCGCCTTTTTGCCG
TCCCAAATAGTTGCGCGTTTGTGCAATGCGACGCTCCGCAGAATCATCGA
TGTGCTCTTTCGTGTCACGCGTTGAGAACCCTCACATACATGTAGCCTCA
TGCGCCTGCCTGACTGCACGCTTTCGTCTCATACCCAGGGTGCCGGTGGT
TGGGCGCAGCAGCACCAGCCCCAGCAAGCGCAGGCTCAGGCGATGGCGTG
GGCCCAGCAACAGAAGCTCCAGCAGCTGCAGCAACAGCAGCAGCTGCTGC
TCCAGCGACAGCAATGGCAAATGCAGCAGCAGCAGCAGCAGCAGCAAAAC
ACCCAGGGGGGGTTGAACGCGGGCGCTTCTGGGGGGGCTATGTTTGGCGT
AGGCCAAGCCGGTGGACACCAGCAACACCCGCAGGGCATGGGCGCGGCCA
CCAACGGTTCGGGGCTAACTGGGCTGCGTGGGGGGGGCGATGGGGCTGCT
CAAGGAAACGGCGCGACGGTAGTGATGCCCGGCGGATTGGGAGCAGGGGC
GAGCGGCATGGGGATGGGGGAGCTGCGGTAACGGAGCCCACTTGCCATCC
ATCCCTTGGTGTTAGGCGAGTGCGGAGGTTTGCGGGCGTTGTGACTTTGA
GGCCCGAGAGGTAGAGCGATGCGGAAACCGGTCAGGACCGTTAATTTATT
GTTTCACTTTGTATGCTCTTTGTGTAGCCTTGTCCCTTGCGTTGCTCGGT
TTGACGTTCTTTTGTTTACGCCTGCAGGAAAGTTGAGCAATTCGCTGCCG
GTTCATGAACGTAACCGATCACCGTGTCGCCTTGGTGCCGACGATTTCGT
AGGCCGTGTAAGGACCTTTGTTTTTAGTATTTTTGAGGCTGTGTAAACTG
AAGCCGCCTTTTGGCTGTGAGCGGCGCCCTCACCATTTCTGCGTATTGTC
CCTTTGTCTTGTAGCCGTCGAGTCTTGCGGTCTGAGCGACGCCAGGCGTC
CGGTGTCGTGTGCTACGCGGTTTTGTGCTACTGCACTTTGTTATATGGCA
CCTTGGGTTAGCCTTTGGGGGGTTAGCGATGTTTATTTACAGCTGTGAAG
TTGAAAGAAAAGATGACGATGAACTCACCTTCGAGTACGATGACGGGCAG
CACGAGTTCTATATGGGTCTATTTTTCGAGATTTCAGTACACGTGCTCTG
AGCACGTGCTCAAGTTCGACCGAATCTCAGCCTGGGACCCCAATGAACAG
GACCCTCTTGTTGATGCTGCCAAGGTCGTCTCTCCGCCGTTGAACCTCTT
CCAACCTGGTACCTTGGGATGTACAGATGGAGCTGTTGTATATTGGTTTC
AGCTTTGCAAACAAGGACAATATTATTTTCTCTCTCGGTGCACCCAAATG
TGGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:320616..324819+

>mRNA_E-siliculosus-1a_M_contig86.16652.1 ID=mRNA_E-siliculosus-1a_M_contig86.16652.1|Name=mRNA_E-siliculosus-1a_M_contig86.16652.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3114bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:320616..324819+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCGGAACAGGCGCTCAGGAAGCGATTGGAGACCTTGGTCAAGACTGG
AGAGAACCGCTTCTGCGCCGACTGCGGCAAGAGAGATGTCGGAACAGGCG
CTCAGGAAGCGATTGGAGACCTTGGTCAAGACTGGAGAGAACCGCTTCTG
CGCCGACTGCGGCAAGAGAGAGCCCCGCTGGGCCTCCGTTAATCTCGGGC
TGTTCATATGCTTGGATTGCTCTGGAATCCACCGCAACTTGGGGGTTCAC
ATCTCGTTTGTTCGGAGCGTCAACCTGGACACTTGGAAGCCGGCTCAAGT
TAAGAGCCCCGCTGGGCCTCCGTTAATCTCGGGCTGTTCATATGCTTGGA
TTGCTCTGGAATCCACCGCAACTTGGGGGTTCACATCTCGTTTGTTCGGA
GCGTCAACCTGGACACTTGGAAGCCGGCTCAAGTTAAGGGCATGGAAGAG
ATGGGAAACGAGCGCGCCAAGGCTCACTTCGAGGCCGAAGTGCCGGCCAG
CTACACCGTGCCGCGAGAACACGCCACTGTCCGCGAGCGCGAGAAATGGA
TCCGTGACAAGTACGAGCACAGGCGTTTCGTGTCGAGGAATCCTCAGCCT
GCTCGGCAGCGGAAGCCGGAGGAGTCTACCGGCTCACGATCTTCGAGGGC
ATGGAAGAGATGGGAAACGAGCGCGCCAAGGCTCACTTCGAGGCCGAAGT
GCCGGCCAGCTACACCGTGCCGCGAGAACACGCCACTGTCCGCGAGCGCG
AGAAATGGATCCGTGACAAGTACGAGCACAGGCGTTTCGTGTCGAGGAAT
CCTCAGCCTGCTCGGCAGCGGAAGCCGGAGGAGTCTACCGGCTCACGATC
TTCGAGGAAGGACAGCGGCGCAGCCTCCTCCAAGTCCCCCACGGGAAAGA
CCGGCAGCAGTAGCAGTAGCCGGGCGGCGGGGCGAACATCGTCCTCGACC
TCCACGGCGCCGTCACCGGCCGCTTCCAAGGCTACATCATCTACCACCAC
CAGGGCCGTGCCCCGCCTCCAGAAGGCCGGCACCGGGGCAGTGAAGGCCG
CTTCTGCCGCCGCCGCGCCGGTCGCTCTCCCCGCCCCTGCTGTCGATCTC
CTCGACTTCTCCGAGCCGGCCCCGCCGCAGGCGCCGCCAAAAGCGTCGCC
GCCGCCGTCGAGGGCTACGTCGGCGCCGCCACCGCCGCCGGCGGACCAGA
TGTTCGAGTTCTCGGATTTTCAGTCTGCGCCTTCTTCGTCGTCGTCGTCG
GGGGCGACGGTGCCGTCGGCAGCGGCGTCGGTGGGATCCCAACAGCAGCA
GCAGCAGCAGCCGGCCGCAGTGCAGCAACCGGCGGCGCAGTCTGCACAGC
AAGGGCAGCAGGAGCAACCAGCGGCAGGTGCCCCTGGGAAGGAAGGACAG
CGGCGCAGCCTCCTCCAAGTCCCCCACGGGAAAGACCGGCAGCAGTAGCA
GTAGCCGGGCGGCGGGGCGAACATCGTCCTCGACCTCCACGGCGCCGTCA
CCGGCCGCTTCCAAGGCTACATCATCTACCACCACCAGGGCCGTGCCCCG
CCTCCAGAAGGCCGGCACCGGGGCAGTGAAGGCCGCTTCTGCCGCCGCCG
CGCCGGTCGCTCTCCCCGCCCCTGCTGTCGATCTCCTCGACTTCTCCGAG
CCGGCCCCGCCGCAGGCGCCGCCAAAAGCGTCGCCGCCGCCGTCGAGGGC
TACGTCGGCGCCGCCACCGCCGCCGGCGGACCAGATGTTCGAGTTCTCGG
ATTTTCAGTCTGCGCCTTCTTCGTCGTCGTCGTCGGGGGCGACGGTGCCG
TCGGCAGCGGCGTCGGTGGGATCCCAACAGCAGCAGCAGCAGCAGCCGGC
CGCAGTGCAGCAACCGGCGGCGCAGTCTGCACAGCAAGGGCAGCAGGAGC
AACCAGCGGCAGGTGCCCCTGGGAAGGCATCCGCGGCGTCGATTTTGTCC
ATGTTTAACAGCCCCGCGGGCGGCGGCGTCGCGGGCCGCAGTATGGCGGG
GCCTGTTGGTTCATCCCCTGTAGCAGGGGTTATGAAAACCCCAGAGCTGA
ACCAAGTGTCGCAGATGATGTCGACGCTGAACGTCGGGGGCCTCGCGCCG
ATGGGCTCCCAGCAGATGGGCATGCCGGCATCCGCGGCGTCGATTTTGTC
CATGTTTAACAGCCCCGCGGGCGGCGGCGTCGCGGGCCGCAGTATGGCGG
GGCCTGTTGGTTCATCCCCTGTAGCAGGGGTTATGAAAACCCCAGAGCTG
AACCAAGTGTCGCAGATGATGTCGACGCTGAACGTCGGGGGCCTCGCGCC
GATGGGCTCCCAGCAGATGGGCATGCCGGGTGCCGGTGGTTGGGCGCAGC
AGCACCAGCCCCAGCAAGCGCAGGCTCAGGCGATGGCGTGGGCCCAGCAA
CAGAAGCTCCAGCAGCTGCAGCAACAGCAGCAGCTGCTGCTCCAGCGACA
GCAATGGCAAATGCAGCAGCAGCAGCAGCAGCAGCAAAACACCCAGGGGG
GGTTGAACGCGGGCGCTTCTGGGGGGGCTATGTTTGGCGTAGGCCAAGCC
GGTGGACACCAGCAACACCCGCAGGGCATGGGCGCGGCCACCAACGGTTC
GGGGCTAACTGGGCTGCGTGGGGGGGGCGATGGGGCTGCTCAAGGAAACG
GCGCGACGGTAGTGATGCCCGGCGGATTGGGAGCAGGGGCGAGCGGCATG
GGGATGGGGGAGCTGCGGTAAGGTGCCGGTGGTTGGGCGCAGCAGCACCA
GCCCCAGCAAGCGCAGGCTCAGGCGATGGCGTGGGCCCAGCAACAGAAGC
TCCAGCAGCTGCAGCAACAGCAGCAGCTGCTGCTCCAGCGACAGCAATGG
CAAATGCAGCAGCAGCAGCAGCAGCAGCAAAACACCCAGGGGGGGTTGAA
CGCGGGCGCTTCTGGGGGGGCTATGTTTGGCGTAGGCCAAGCCGGTGGAC
ACCAGCAACACCCGCAGGGCATGGGCGCGGCCACCAACGGTTCGGGGCTA
ACTGGGCTGCGTGGGGGGGGCGATGGGGCTGCTCAAGGAAACGGCGCGAC
GGTAGTGATGCCCGGCGGATTGGGAGCAGGGGCGAGCGGCATGGGGATGG
GGGAGCTGCGGTAA
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