mRNA_E-siliculosus-1a_M_contig86.16642.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig86.16642.1
Unique NamemRNA_E-siliculosus-1a_M_contig86.16642.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig86.16642.1 vs. uniprot
Match: D8LBS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS2_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 1.120e-73
Identity = 166/191 (86.91%), Postives = 167/191 (87.43%), Query Frame = 1 
Query:   58 DLMTGRPVQAAERFELQLKEAQNAGDPILEALAERNLADTREVDEDLPGALAHLRRCRALAQRSRNSALEADACRRLSSVYAEIAGQSGGXXXXXXXXXXXXXXPEREKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREDSEVEFLKSTAADRARLFAERYETAVFGSEWPVSSGNGGELASEEL 630
            DLMTGRPVQAAERFELQLKEAQNAGDPILEALAERNLADTREVDEDLPGALAHLRRCRALAQRSRNSALEADACRRLSSVYAEIAGQSG XXXXXXXXXXXXX PEREK       XXXXXXX          XXXXXXXXX REDS+VEFLKSTAADRARLFAERYETAVFG EWPVSSGNGGEL  E L
Sbjct:  216 DLMTGRPVQAAERFELQLKEAQNAGDPILEALAERNLADTREVDEDLPGALAHLRRCRALAQRSRNSALEADACRRLSSVYAEIAGQSGXXXXXXXXXXXXXXSPEREKGGDHGDGXXXXXXXTQERNRSDSGXXXXXXXXXXREDSDVEFLKSTAADRARLFAERYETAVFGLEWPVSSGNGGELIGEAL 406
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig86.16642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBS2_ECTSI1.120e-7386.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig86contigE-siliculosus-1a_M_contig86:238597..240700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size753
Model size753
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig86.16642.1prot_E-siliculosus-1a_M_contig86.16642.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig86 238597..240700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936310.2522166-CDS-E-siliculosus-1a_M_contig86:238596..2387221622936310.2522166-CDS-E-siliculosus-1a_M_contig86:238596..238722Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 238597..238722 +
1696251019.3258636-CDS-E-siliculosus-1a_M_contig86:238596..2387221696251019.3258636-CDS-E-siliculosus-1a_M_contig86:238596..238722Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 238597..238722 +
1622936310.2697482-CDS-E-siliculosus-1a_M_contig86:239904..2402491622936310.2697482-CDS-E-siliculosus-1a_M_contig86:239904..240249Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 239905..240249 +
1696251019.3413553-CDS-E-siliculosus-1a_M_contig86:239904..2402491696251019.3413553-CDS-E-siliculosus-1a_M_contig86:239904..240249Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 239905..240249 +
1622936310.287531-CDS-E-siliculosus-1a_M_contig86:240418..2407001622936310.287531-CDS-E-siliculosus-1a_M_contig86:240418..240700Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 240419..240700 +
1696251019.3605466-CDS-E-siliculosus-1a_M_contig86:240418..2407001696251019.3605466-CDS-E-siliculosus-1a_M_contig86:240418..240700Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig86 240419..240700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig86.16642.1

>prot_E-siliculosus-1a_M_contig86.16642.1 ID=prot_E-siliculosus-1a_M_contig86.16642.1|Name=mRNA_E-siliculosus-1a_M_contig86.16642.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=251bp
AATDSARQLALSHAHAGAVDLMTGRPVQAAERFELQLKEAQNAGDPILEA
LAERNLADTREVDEDLPGALAHLRRCRALAQRSRNSALEADACRRLSSVY
AEIAGQSGGGGGGNDGGGGGGGSPEREKDGDHGDGGADGGGGTQERNRSD
SGSPEPEIEIEEREDSEVEFLKSTAADRARLFAERYETAVFGSEWPVSSG
NGGELASEELADDDGEGGEEPGDRRRISSDSGGDRIAEEAAAAVPVAPVA
*
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mRNA from alignment at E-siliculosus-1a_M_contig86:238597..240700+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig86.16642.1 ID=mRNA_E-siliculosus-1a_M_contig86.16642.1|Name=mRNA_E-siliculosus-1a_M_contig86.16642.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2104bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:238597..240700+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCGGCGACGGATTCCGCACGGCAGCTCGCGTTGTCTCATGCTCACGCAGG
GGCAGTTGACCTCATGACAGGGAGGCCGGTACAAGCGGCGGAGCGCTTCG
AACTCCAGCTTAAAGAAGCTCAAAACGTAAGAGAGAGGGCGAAGGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGA
GGGAGAGAGAGAGAGAGAGAGAGAGCAGGAGAGAAGGAGAGAACGAAAAA
GGCACCCAACGAGGGGCGGGGGGAGGGGCGTGGAATCCGCACACACCGAT
AACCACGACCTAAGAAAATTAAAATTTCCACCCCACGGTCCCTGATCACA
AATTAGGAACGGAGCTCGTAGTCGAAAAGCATGGATGGGTGGTCAACGTT
CGAACGGCTAAATGGCAACCAAGAACTGAGCACAATCACCTCACCCCGCT
CCCGGTCAGATGGATTTTCTTGTGGCGCCAATATTGGGTGTTGAATCCGC
ACAACCAAGATAGTCTACCCGGGCAATCTCTTTGGAGATGAAAATACAGG
GACGCTAGCGCATTGTTCCGTCACAAAAACTGTCTGCGGCCGGCGAGTGC
CGCGAAACTGCAGGCTGCCAGCTAGGTTCGCAAGAATCCAGTCAAGAATG
CGCCCCGCTTCTCCGTGGTAGTGAGAGTAGACGAAGCGCCTAGAGAGGCT
TTGTTGCGAATTATTGCGGACAATGTGCGCCTTGTCTATATCTGTACATC
GCCCTGCCGTCAACCGGCTTTACCTATACTATGTATAAACGTACCAGGTA
CGCACATGGATACGACCGTATTGTAAGATTCTTGCTCCCGACGACGAACG
GGAAACAGAGAATCTGCGGGTTAATCTGCGGGTTTAATCGCATTCTGTAA
TCAACGTGGTAGGCAACTGTGGTATTGGAACCACGCCTGGTCAGGGCCGA
GTGCGCCCCGCCTTGCACGTTCACACGCGGGCACTGAGCCTTCCGTAGAA
AAGCCCCCTTTTAGCCTTACCTGCGGCAGGTACACAGCAGCATGCTGCCG
TGTTGGTATCTGGAGTGTGTGGCACTTGTCTCCTGAATGTCGGCACTCAC
TTCGTCGGTGGACAGGAGGAATCAGGGGCGGAACGAGCACGACGTGTGAT
TCATGCACACTCCTATGGTGCGCTCTCCACGCCCACATGCCTTCTGATCT
ATACTCCACAACAACGAAAAGCAAGCTCATATCAGACACACCCTCCCGCC
CGCCCACCCATCCATCACCCTGCACACCTACTACGTACACCACGTATGTA
TGCATTAGGCTGGTGACCCTATTCTGGAGGCCCTCGCAGAGCGCAACTTG
GCCGACACAAGAGAGGTGGACGAGGACCTGCCTGGGGCACTGGCCCACCT
CCGGCGCTGCCGCGCCCTGGCCCAAAGGAGTCGCAACTCGGCGCTCGAGG
CCGACGCCTGCCGGCGGCTGTCTTCTGTATACGCTGAGATTGCCGGCCAA
AGCGGCGGCGGTGGCGGTGGTAACGATGGGGGTGGAGGAGGGGGCGGATC
GCCGGAGAGAGAGAAGGATGGTGATCATGGCGACGGTGGTGCTGACGGTG
GCGGCGGCACACAAGAGCGCAACCGTTCTGATAGTGGGTCTCCAGAGCCT
GAGGTAAACTTCGAATTTTTTCCAGAGCAAGATGTTCGGACTATTGTACT
GTATACCGAAACGCAATCCATTTGGGATGAGCAGCGCAACCGGTTGGTTT
CATACACCCCCCCGTTCCACCCTGAAACTTACCTCTCTTCGCATGTTGAA
ACGCTGCCATTATCACGCACAGATCGAAATCGAGGAGCGCGAAGACAGCG
AAGTCGAATTCTTGAAGTCCACGGCGGCCGACAGAGCCCGCCTGTTTGCC
GAGCGCTACGAAACGGCTGTTTTCGGGTCGGAGTGGCCGGTCAGCAGCGG
GAACGGCGGCGAGTTGGCCAGCGAGGAGCTCGCCGACGACGACGGAGAAG
GAGGCGAGGAACCGGGAGACAGAAGAAGAATCAGCAGCGATAGCGGCGGG
GACCGCATCGCGGAGGAGGCTGCGGCGGCCGTGCCGGTTGCTCCTGTCGC
CTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig86:238597..240700+

>mRNA_E-siliculosus-1a_M_contig86.16642.1 ID=mRNA_E-siliculosus-1a_M_contig86.16642.1|Name=mRNA_E-siliculosus-1a_M_contig86.16642.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1506bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig86:238597..240700+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCGGCGACGGATTCCGCACGGCAGCTCGCGTTGTCTCATGCTCACGCAGG
GGCAGTTGACCTCATGACAGGGAGGCCGGTACAAGCGGCGGAGCGCTTCG
AACTCCAGCTTAAAGAAGCTCAAAACGCGGCGACGGATTCCGCACGGCAG
CTCGCGTTGTCTCATGCTCACGCAGGGGCAGTTGACCTCATGACAGGGAG
GCCGGTACAAGCGGCGGAGCGCTTCGAACTCCAGCTTAAAGAAGCTCAAA
ACGCTGGTGACCCTATTCTGGAGGCCCTCGCAGAGCGCAACTTGGCCGAC
ACAAGAGAGGTGGACGAGGACCTGCCTGGGGCACTGGCCCACCTCCGGCG
CTGCCGCGCCCTGGCCCAAAGGAGTCGCAACTCGGCGCTCGAGGCCGACG
CCTGCCGGCGGCTGTCTTCTGTATACGCTGAGATTGCCGGCCAAAGCGGC
GGCGGTGGCGGTGGTAACGATGGGGGTGGAGGAGGGGGCGGATCGCCGGA
GAGAGAGAAGGATGGTGATCATGGCGACGGTGGTGCTGACGGTGGCGGCG
GCACACAAGAGCGCAACCGTTCTGATAGTGGGTCTCCAGAGCCTGAGGCT
GGTGACCCTATTCTGGAGGCCCTCGCAGAGCGCAACTTGGCCGACACAAG
AGAGGTGGACGAGGACCTGCCTGGGGCACTGGCCCACCTCCGGCGCTGCC
GCGCCCTGGCCCAAAGGAGTCGCAACTCGGCGCTCGAGGCCGACGCCTGC
CGGCGGCTGTCTTCTGTATACGCTGAGATTGCCGGCCAAAGCGGCGGCGG
TGGCGGTGGTAACGATGGGGGTGGAGGAGGGGGCGGATCGCCGGAGAGAG
AGAAGGATGGTGATCATGGCGACGGTGGTGCTGACGGTGGCGGCGGCACA
CAAGAGCGCAACCGTTCTGATAGTGGGTCTCCAGAGCCTGAGATCGAAAT
CGAGGAGCGCGAAGACAGCGAAGTCGAATTCTTGAAGTCCACGGCGGCCG
ACAGAGCCCGCCTGTTTGCCGAGCGCTACGAAACGGCTGTTTTCGGGTCG
GAGTGGCCGGTCAGCAGCGGGAACGGCGGCGAGTTGGCCAGCGAGGAGCT
CGCCGACGACGACGGAGAAGGAGGCGAGGAACCGGGAGACAGAAGAAGAA
TCAGCAGCGATAGCGGCGGGGACCGCATCGCGGAGGAGGCTGCGGCGGCC
GTGCCGGTTGCTCCTGTCGCCTAAATCGAAATCGAGGAGCGCGAAGACAG
CGAAGTCGAATTCTTGAAGTCCACGGCGGCCGACAGAGCCCGCCTGTTTG
CCGAGCGCTACGAAACGGCTGTTTTCGGGTCGGAGTGGCCGGTCAGCAGC
GGGAACGGCGGCGAGTTGGCCAGCGAGGAGCTCGCCGACGACGACGGAGA
AGGAGGCGAGGAACCGGGAGACAGAAGAAGAATCAGCAGCGATAGCGGCG
GGGACCGCATCGCGGAGGAGGCTGCGGCGGCCGTGCCGGTTGCTCCTGTC
GCCTAA
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