mRNA_E-siliculosus-1a_M_contig85.16588.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig85.16588.1 vs. uniprot
Match: D7FZJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ0_ECTSI) HSP 1 Score: 279 bits (714), Expect = 8.110e-85 Identity = 149/165 (90.30%), Postives = 154/165 (93.33%), Query Frame = 2
Query: 50 HLCFAPVAALL*DNAGKASIRGGRRTPSKPLAMDRPGVSSYSTSVESAGHALSGLAAFSLLPLFHFQLFFFLLESMGGNGFVLCLAWVIVPSVATRVPRLQVLAARHLREMQAIAGVLLAGSLAAGAAGFLTVRLALSAAGLSVAWGFCQAPHWGRGRGAEVMDG 544
HL + AA+ DNAGK+SIRGGRRTPSKPLAMDR G SSYS +VESAGHALSGLAAFSLLPLFHFQLFFFLLESMGGNGFVLCLAWV+VPSVATRVPRLQVLAARHLREMQAIAG LLAGSLAAGAAGFLTVRLALSAAGLSVAWGFC APHWGRGRGAEVMDG
Sbjct: 21 HLQLSSSAAMP-DNAGKSSIRGGRRTPSKPLAMDRLGASSYSAAVESAGHALSGLAAFSLLPLFHFQLFFFLLESMGGNGFVLCLAWVVVPSVATRVPRLQVLAARHLREMQAIAGGLLAGSLAAGAAGFLTVRLALSAAGLSVAWGFCHAPHWGRGRGAEVMDG 184
BLAST of mRNA_E-siliculosus-1a_M_contig85.16588.1 vs. uniprot
Match: A0A6H5KAX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAX5_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 1.090e-5 Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = -3
Query: 39 MASKVFAYHHGLMLYRRCPTAVLLPVQNKDESTA 140
MASKVF YHHGL L R P AVLLPVQNKDES++
Sbjct: 1 MASKVFGYHHGLTLSPRYPPAVLLPVQNKDESSS 34 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig85.16588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig85.16588.1 >prot_E-siliculosus-1a_M_contig85.16588.1 ID=prot_E-siliculosus-1a_M_contig85.16588.1|Name=mRNA_E-siliculosus-1a_M_contig85.16588.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=888bp MDRPGVSSYSTSVESAGHALSGLAAFSLLPLFHFQLFFFLLESMGGNGFVback to top mRNA from alignment at E-siliculosus-1a_M_contig85:137354..148813+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig85.16588.1 ID=mRNA_E-siliculosus-1a_M_contig85.16588.1|Name=mRNA_E-siliculosus-1a_M_contig85.16588.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=11460bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig85:137354..148813+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig85:137354..148813+ >mRNA_E-siliculosus-1a_M_contig85.16588.1 ID=mRNA_E-siliculosus-1a_M_contig85.16588.1|Name=mRNA_E-siliculosus-1a_M_contig85.16588.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5328bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig85:137354..148813+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |