mRNA_E-siliculosus-1a_M_contig84.16540.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig84.16540.1 vs. uniprot
Match: D8LQ04_ECTSI (USP7_ICP0_bdg domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ04_ECTSI) HSP 1 Score: 704 bits (1816), Expect = 2.520e-240 Identity = 642/956 (67.15%), Postives = 648/956 (67.78%), Query Frame = 1
Query: 97 MAQRNIFIDPQGFVRISVKIIDVREAYFRVATDVDLARSVTGRGGGGDFADWRTCLPAKSFKHDQLLYVIQKVSELTGVPLVSCRPWLCMPRKNRNGPPGPLRPAAALLPQHLQMSICEILAAHAATKQDQPPLSIHYPPVVSGSNEPEFVFVGKAMAHRTDRGCELVPIALSLAHLPEGLNLEVFEQITPEEVRRFSGDKTVAEAGLSHGSILLFRSAQQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHATVTHAPKPAFPPARSGGIDAXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKSAPGWDGGPAAVVGRAASPPGEIPVVMDPAAQRRATCLALFQVQENQRQHQAKEAARAVAKKLAAEXXXXXXKEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVLTPAQQAEVAXXXRMAAHAAAVEHAQSKAQAYRTVSIMEALREGAPPTSTPP--QPQPPAPVTGSVVARQAASAXXXXXXXXXXXXXXXXXXXXX-AASGEGTDGKAGVVSSGGXXXXXXXXXXXXXXXXXXXTATAASAPGKKANGEESANTASSDGSSTDCXXXXXXXXXXKSRVVADANGGAAVVAGKTKNEGTAKPSTGASQPVVPQASPENGGXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEGAPESAAAIPAEMQRRSSXXXXXXXXXXIQSSARAGTRXXXXXXXXXXXXXXXXXXXSDGSSKSPRGGXXXXXXXXXXXXXXXXXXXXXXXXXAKTTDARGGGGGEEAAPAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAEIA--------------------------------------SAIKTISHDEKDSFRSRQLERLLAIKEKETSTDGDGDDGGD 2841
MAQRNIFIDPQGFVRISVKIIDVREAYFRVATDVDLARSVTGRGGGGDFADWRTCLPAKSFKHDQLLYVIQKVSELTGVPLVSCRPWLCMPRKNRNGPPGPLRPAAALLPQHLQMSICEILAAHAATKQDQPPLSIHYPPVVSGSNEPEFVFVGKAMAHRTDRGCELVPIALSLAHLPEGLNLEVFEQITPEEVRRF+GDKTVAEAGLSHGSILLFRSAQQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AHATVTHAPKPAFPPARSG I+ XXXXXXXXXXXXXXXXXXXXXXKGEKSAPGWDGGPAAVVGR ASPPGEIPVVMDPAAQRRATCLALFQVQENQRQHQAKEAARAVAKKLAAE KEKL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LTPAQQAEVA XRMAAHAAAVEHAQSKAQAYRTVSIMEALREGAPP STPP Q QP AP GSVVA+QAA AXXXXXXXXXXXXXXXX AASGEGTDGKAG VSSGG K +GT G +G +A XXXXXXXXXX XXXX PAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAEIA SAIKTISHDEKDSFRSRQLERLLAIKEKETSTDGDGDDGGD
Sbjct: 1 MAQRNIFIDPQGFVRISVKIIDVREAYFRVATDVDLARSVTGRGGGGDFADWRTCLPAKSFKHDQLLYVIQKVSELTGVPLVSCRPWLCMPRKNRNGPPGPLRPAAALLPQHLQMSICEILAAHAATKQDQPPLSIHYPPVVSGSNEPEFVFVGKAMAHRTDRGCELVPIALSLAHLPEGLNLEVFEQITPEEVRRFNGDKTVAEAGLSHGSILLFRSAQQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMA--AHATVTHAPKPAFPPARSGRIEDAVAAXXXXXXXXXXXXXXXXXXXXXXKGEKSAPGWDGGPAAVVGRVASPPGEIPVVMDPAAQRRATCLALFQVQENQRQHQAKEAARAVAKKLAAEAVLTSAKEKLKKIATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------QFLTPAQQAEVAAAXRMAAHAAAVEHAQSKAQAYRTVSIMEALREGAPPMSTPPPAQLQPSAPAMGSVVAQQAAVAXXXXXXXXXXXXXXXXVPARVPAASGEGTDGKAGGVSSGGDD--------------------------------------------------------------------------KLAGKGT------------------------------------------------GVDGGSTGSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------PAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAEIAAGSSDKAIRVWDLATGVALALFKGHKDDVESIDFSAIASAIKTISHDEKDSFRSRQLERLLAIKEKETSTDGDGDDGGD 756
BLAST of mRNA_E-siliculosus-1a_M_contig84.16540.1 vs. uniprot
Match: A0A6H5LAN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN8_9PHAE) HSP 1 Score: 464 bits (1195), Expect = 7.750e-148 Identity = 582/771 (75.49%), Postives = 585/771 (75.88%), Query Frame = 1
Query: 565 MAHRTDRGCELVPIALSLAHLPEGLNLEVFEQITPEEVRRFSGDKTVAEAGLSHGSILLFRSAQQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--------HATVTHAPKPAFPPARSGGIDAXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKSAPGWDGGPAAVVGRAASPPGEIPVVMDPAAQRRATCLALFQVQENQRQHQAKEAARAVAKKLAAEXXXXXXKEKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVLTPAQQAEVAXXXRMAAHAAAVEHAQSKAQAYRTVSIMEALREGAPPTSTPPQPQPPAP----VTGSVVARQAASAXXXXXXXXXXXXXXXXXXXXXAASGEGTDGKAGVVSSGGXXXXXXXXXXXXXXXXXXXTATAASAPGKKANGEESANTASSDGSSTDCXXXXXXXXXXKSRVVADANGGAAVVAGKTKNEGTAKPSTGASQPVVPQASPENGGXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEGAPESAAAIPAEMQRRSSXXXXXXXXXXIQSSARAGTRXXXXXXXXXXXXXXXXXXXSDGSSKSPRGGXXXXXXXXXXXXXXXXXXXXXXXXXAKTTDARGGGGGEEAAPAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAEIASAIKTISHDEKDSFRSRQLERLLAIKEKETSTDGDGDDGGD 2841
MAHRTDRGCELVPIALSLAHLPEGL LEVFEQITPEEVRRFSGDKTVAEAGLSHGS+LLFRSAQQE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HATVTHAPKPAFP XXXXXXXXXXXXXXXXXXXXXXXXXXKGEKSAPGWDGGPAAVVGRAASP GEIPVVMDPAAQRRATCLALFQVQENQRQ +AKEAARAVAK XXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVLTPAQQAEVAXXXRMAAHAAAVEHAQSKAQAYRTVSIMEALREGAPPTSTPPQ V GSV AR XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX XXXXX ADANGGAAVVAGKTKNEGTAKPST SQPVV Q S ENGG AGDEGAPES A IPAEMQRRSS XX IQSSARAGTR XX SDGSSKSPR XXXXXXXXXXXXXXXXXXXXXXXXX EAAPAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAEIASAI+TISHDEKDSFRSRQLERLLAIKEKETSTDGD DDGGD
Sbjct: 1 MAHRTDRGCELVPIALSLAHLPEGLKLEVFEQITPEEVRRFSGDKTVAEAGLSHGSVLLFRSAQQETTPSPCPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHATVTHAPKPAFP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGEKSAPGWDGGPAAVVGRAASPSGEIPVVMDPAAQRRATCLALFQVQENQRQQRAKEAARAVAKXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVLTPAQQAEVAXXXRMAAHAAAVEHAQSKAQAYRTVSIMEALREGAPPTSTPPQXXXXXXXXXXVMGSVAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------XXXXXXXXXPADANGGAAVVAGKTKNEGTAKPSTATSQPVVRQVSSENGGKKEVDPSSGAAPGTARATRTSRSTAPAGDEGAPESVATIPAEMQRRSSRKAAAVXXQQIQSSARAGTRGGNSXXG------------SDGSSKSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAPAASPAPSADLASFIAQLMHVPGFTMEKCMELTRSKERAEIASAIRTISHDEKDSFRSRQLERLLAIKEKETSTDGDRDDGGD 725 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig84.16540.1 >prot_E-siliculosus-1a_M_contig84.16540.1 ID=prot_E-siliculosus-1a_M_contig84.16540.1|Name=mRNA_E-siliculosus-1a_M_contig84.16540.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=948bp QVEPVKTQFLLHKFNAQATDFGYTRAFEHEVIMAQRNIFIDPQGFVRISVback to top mRNA from alignment at E-siliculosus-1a_M_contig84:379387..387641+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig84.16540.1 ID=mRNA_E-siliculosus-1a_M_contig84.16540.1|Name=mRNA_E-siliculosus-1a_M_contig84.16540.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8255bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:379387..387641+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig84:379387..387641+ >mRNA_E-siliculosus-1a_M_contig84.16540.1 ID=mRNA_E-siliculosus-1a_M_contig84.16540.1|Name=mRNA_E-siliculosus-1a_M_contig84.16540.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5688bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:379387..387641+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |