mRNA_E-siliculosus-1a_M_contig84.16537.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig84.16537.1
Unique NamemRNA_E-siliculosus-1a_M_contig84.16537.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig84.16537.1 vs. uniprot
Match: D8LQ02_ECTSI (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ02_ECTSI)

HSP 1 Score: 397 bits (1021), Expect = 1.200e-136
Identity = 242/260 (93.08%), Postives = 245/260 (94.23%), Query Frame = 3 
Query:  237 MSSSVLKTIAARNAAQRRRVVEKKHGETIDVPEGTGLLVTGCSGCTVNAPGRSSSVTVERCDAGTTVNVGSVVASLEIIHCTDVQVSVARCRTITXXXXXXXTLTCKCQPPSGQXXXXXXXXXXXXXXXXXXXEAKVQPSEAADEASAIRLFTSCSEGVTVRYEGLLSQPSPGPVAAADPAVAADATAVTYHIPKDWRHENGDGPRSVTRVSGAGSGXXXXXXXXACCKTLRCDQYGIPLEEVEAAEAGVAWTWEHGRGG 1016
            MSSSVLKTIAARNAAQRRRVVEKKHGETIDVPEG+GLLVTGCSGCT+NAPGRSSSVTVERCDAGTTVNVGSVVASLEIIHCTDVQVSVARCRTI XXXXXXX    KCQPPSG XXXXXXXXXXXXXXXXXX E KVQPSEAADEASAIRLFTSCSEGVTVRYEGLLS+P PGPVAAADPAVAADATAVTY IPKDWRHENGD PRSVTRVSGAGSGXXXX    ACCKTLRCDQYGIPLEEVEAAEAGVAWTWEHGRGG
Sbjct:    1 MSSSVLKTIAARNAAQRRRVVEKKHGETIDVPEGSGLLVTGCSGCTINAPGRSSSVTVERCDAGTTVNVGSVVASLEIIHCTDVQVSVARCRTIXXXXXXXXXXXXKCQPPSGXXXXXXXXXXXXXXXXXXX-EVKVQPSEAADEASAIRLFTSCSEGVTVRYEGLLSKPPPGPVAAADPAVAADATAVTYRIPKDWRHENGDTPRSVTRVSGAGSGXXXX----ACCKTLRCDQYGIPLEEVEAAEAGVAWTWEHGRGG 255
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ02_ECTSI1.200e-13693.08C-CAP/cofactor C-like domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig84contigE-siliculosus-1a_M_contig84:360273..362279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size804
Model size1040
Exons2
Ec32 orthologEc-15_001460.1
Ec32 ortholog descriptionAdenylate cyclase-associated CAP, C-terminal
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig84.16537.1prot_E-siliculosus-1a_M_contig84.16537.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig84 360509..362279 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936288.319807-UTR-E-siliculosus-1a_M_contig84:360272..3605081622936288.319807-UTR-E-siliculosus-1a_M_contig84:360272..360508Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 360273..360508 +
1696251009.835458-UTR-E-siliculosus-1a_M_contig84:360272..3605081696251009.835458-UTR-E-siliculosus-1a_M_contig84:360272..360508Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig84 360273..360508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936288.3403904-CDS-E-siliculosus-1a_M_contig84:360508..3607771622936288.3403904-CDS-E-siliculosus-1a_M_contig84:360508..360777Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 360509..360777 +
1696251009.8456197-CDS-E-siliculosus-1a_M_contig84:360508..3607771696251009.8456197-CDS-E-siliculosus-1a_M_contig84:360508..360777Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 360509..360777 +
1622936288.365592-CDS-E-siliculosus-1a_M_contig84:361744..3622791622936288.365592-CDS-E-siliculosus-1a_M_contig84:361744..362279Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 361745..362279 +
1696251009.8592556-CDS-E-siliculosus-1a_M_contig84:361744..3622791696251009.8592556-CDS-E-siliculosus-1a_M_contig84:361744..362279Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 361745..362279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig84.16537.1

>prot_E-siliculosus-1a_M_contig84.16537.1 ID=prot_E-siliculosus-1a_M_contig84.16537.1|Name=mRNA_E-siliculosus-1a_M_contig84.16537.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=268bp
MSSSVLKTIAARNAAQRRRVVEKKHGETIDVPEGTGLLVTGCSGCTVNAP
GRSSSVTVERCDAGTTVNVGSVVASLEIIHCTDVQVSVARCRTITVDVST
DVTLTCKCQPPSGQEAEQQQQQQQQQQQQGGGGEAKVQPSEAADEASAIR
LFTSCSEGVTVRYEGLLSQPSPGPVAAADPAVAADATAVTYHIPKDWRHE
NGDGPRSVTRVSGAGSGGGGGGGGGACCKTLRCDQYGIPLEEVEAAEAGV
AWTWEHGRGGSRGSSRT*
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mRNA from alignment at E-siliculosus-1a_M_contig84:360273..362279+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig84.16537.1 ID=mRNA_E-siliculosus-1a_M_contig84.16537.1|Name=mRNA_E-siliculosus-1a_M_contig84.16537.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2007bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:360273..362279+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTCACACACTAAACAGGAAAAGTGTGTATAAACGTCCCCAACAGCAGTCT
GGCTCCTGACTCCCCTCCTGACCACTTCGACTCTGTCTCCCGCTCTTTGT
ACCAGCGAAACAGCCCAGAGCCTGAGGTGGCCGCTACCTTTGTCGTGAGC
GTGGCGGTGCTGCTCCGAAAGTATTCTGTACAATCAACAACCCGAGCGGC
ATCAAGGAACGAGCACACACACGCGCAGCAGCAACCATGTCGTCCTCTGT
TCTTAAAACAATCGCAGCGAGGAACGCAGCCCAAAGACGCCGTGTGGTCG
AGAAGAAGCACGGGGAGACGATCGATGTGCCCGAAGGGACGGGACTGCTC
GTCACCGGCTGCAGCGGCTGCACCGTCAACGCGCCGGGCAGAAGCAGCAG
CGTCACCGTCGAGCGGTGCGACGCGGGGACCACGGTCAACGTCGGCAGCG
TCGTGGCTTCCCTGGAGATCATCCACTGCACGGACGTCCAGGTCTCAGTA
GCGAGGTGAGGGAATCAAGAAAGCGAGGCGTGATCTATTCAACAAGAAAT
AATATATAGCCTCTCTCTGCTGCAGATGTAAGGAAAAATAAATACACACA
CAGAAAGACTACCCATTCGAGATATGGCCATATGGCCACAGTAGTCGAAC
GGGATGTGGTGGAGTCTTTTCAGTGCGTGGAGGAAAACCGGCTGGGTACT
GGACATATTTCGAGTCTTTGTTAACTCTATACACTGATGATGTACATCAG
TGATGCCAGATACTGTGGCCGCACCCAGAGGAGGCTGGGGCCGAAAATGC
GGTGCAATCAACGTCGTATGCAATAGTCTACTGTATTTAGGAGGACTGCA
TAATTCCATCTCTCGGAGGCAGGCATTGATCTTCCCACCGAGCCCCCCTT
GCTTAAAAGGTTGCTGGCCGGCGTGAGACGGTCACACGTCGACGCGGGGG
GGGCGACGCAATTGCGTCTCTGCCGGTCGCCCTGAGCGTTTCACTTGAGC
ATGGGCCAGTCCATTTTGCCATAATGTATCCCGTACGTCCCGTTGGAATG
GGACCGTCAGATGAATTTGAATTTCACTACGCTCGCCGTCAGCTGGTTTA
AAATGGTGCGCAGATGACTCGACTCCTGAGCGACAAAATCGCCCGTCTCA
AGCAACCCCCGTTTGGCTACATGTAGTTACTGCTGGAGCTGCTGAATAGC
TAGTTCCGATTATTTCTCAAACACACATGGACATATACCTCCGTATGGTT
ACCTGAGTTACGTCTGTTCGCCCTTGTGGACGGTGGTGTTCATACGTAGC
AAAATGCGTCCGCCGTCTGCAGTCGAAGATGCTGATGCTAAATGTCTTCT
TTCGCCCCGGTGCTTTTGCCACACGTCGCTGACCCTCTCGTCACCCCTCT
TGTTTGTGCTATTGCTGATGTTTCTTCCGCTGGCATCGCCGCCGCCGCCG
CCGCCGCCGCCGCCGAGTAAAGGTGTCGCACGATCACCGTCGACGTCTCC
ACCGACGTCACCCTGACCTGCAAGTGCCAGCCGCCCTCCGGGCAGGAGGC
GGAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGAGGAGGAG
GAGAGGCGAAGGTCCAACCGAGCGAAGCGGCCGACGAGGCCTCGGCGATC
CGCCTCTTCACCAGCTGCAGCGAAGGGGTTACCGTGCGGTACGAGGGCCT
CCTGTCGCAACCATCACCAGGCCCGGTCGCCGCCGCCGACCCCGCCGTTG
CCGCCGATGCCACGGCCGTCACCTACCATATCCCGAAAGACTGGCGGCAC
GAAAACGGGGACGGCCCCCGCTCGGTGACGCGCGTGTCGGGAGCGGGGAG
CGGCGGCGGCGGCGGCGGCGGCGGAGGAGCGTGCTGCAAGACTCTCCGTT
GCGACCAGTACGGCATTCCCCTGGAAGAGGTCGAGGCGGCCGAGGCGGGG
GTCGCGTGGACGTGGGAGCATGGCCGGGGGGGGTCCCGCGGTAGCAGTCG
TACGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig84:360273..362279+

>mRNA_E-siliculosus-1a_M_contig84.16537.1 ID=mRNA_E-siliculosus-1a_M_contig84.16537.1|Name=mRNA_E-siliculosus-1a_M_contig84.16537.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1608bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:360273..362279+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCGTCCTCTGTTCTTAAAACAATCGCAGCGAGGAACGCAGCCCAAAG
ACGCCGTGTGGTCGAGAAGAAGCACGGGGAGACGATCGATGTGCCCGAAG
GGACGGGACTGCTCGTCACCGGCTGCAGCGGCTGCACCGTCAACGCGCCG
GGCAGAAGCAGCAGCGTCACCGTCGAGCGGTGCGACGCGGGGACCACGGT
CAACGTCGGCAGCGTCGTGGCTTCCCTGGAGATCATCCACTGCACGGACG
TCCAGGTCTCAGTAGCGAGATGTCGTCCTCTGTTCTTAAAACAATCGCAG
CGAGGAACGCAGCCCAAAGACGCCGTGTGGTCGAGAAGAAGCACGGGGAG
ACGATCGATGTGCCCGAAGGGACGGGACTGCTCGTCACCGGCTGCAGCGG
CTGCACCGTCAACGCGCCGGGCAGAAGCAGCAGCGTCACCGTCGAGCGGT
GCGACGCGGGGACCACGGTCAACGTCGGCAGCGTCGTGGCTTCCCTGGAG
ATCATCCACTGCACGGACGTCCAGGTCTCAGTAGCGAGGTGTCGCACGAT
CACCGTCGACGTCTCCACCGACGTCACCCTGACCTGCAAGTGCCAGCCGC
CCTCCGGGCAGGAGGCGGAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGGGAGGAGGAGGAGAGGCGAAGGTCCAACCGAGCGAAGCGGCCGA
CGAGGCCTCGGCGATCCGCCTCTTCACCAGCTGCAGCGAAGGGGTTACCG
TGCGGTACGAGGGCCTCCTGTCGCAACCATCACCAGGCCCGGTCGCCGCC
GCCGACCCCGCCGTTGCCGCCGATGCCACGGCCGTCACCTACCATATCCC
GAAAGACTGGCGGCACGAAAACGGGGACGGCCCCCGCTCGGTGACGCGCG
TGTCGGGAGCGGGGAGCGGCGGCGGCGGCGGCGGCGGCGGAGGAGCGTGC
TGCAAGACTCTCCGTTGCGACCAGTACGGCATTCCCCTGGAAGAGGTCGA
GGCGGCCGAGGCGGGGGTCGCGTGGACGTGGGAGCATGGCCGGGGGGGGT
CCCGCGGTAGCAGTCGTACGTAGGTGTCGCACGATCACCGTCGACGTCTC
CACCGACGTCACCCTGACCTGCAAGTGCCAGCCGCCCTCCGGGCAGGAGG
CGGAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGAGGAGGA
GGAGAGGCGAAGGTCCAACCGAGCGAAGCGGCCGACGAGGCCTCGGCGAT
CCGCCTCTTCACCAGCTGCAGCGAAGGGGTTACCGTGCGGTACGAGGGCC
TCCTGTCGCAACCATCACCAGGCCCGGTCGCCGCCGCCGACCCCGCCGTT
GCCGCCGATGCCACGGCCGTCACCTACCATATCCCGAAAGACTGGCGGCA
CGAAAACGGGGACGGCCCCCGCTCGGTGACGCGCGTGTCGGGAGCGGGGA
GCGGCGGCGGCGGCGGCGGCGGCGGAGGAGCGTGCTGCAAGACTCTCCGT
TGCGACCAGTACGGCATTCCCCTGGAAGAGGTCGAGGCGGCCGAGGCGGG
GGTCGCGTGGACGTGGGAGCATGGCCGGGGGGGGTCCCGCGGTAGCAGTC
GTACGTAG
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