mRNA_E-siliculosus-1a_M_contig84.16522.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig84.16522.1
Unique NamemRNA_E-siliculosus-1a_M_contig84.16522.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig84.16522.1 vs. uniprot
Match: D8LPY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY8_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 3.730e-47
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:    1 EDGGQSQQQLAVAGGNANDWQMFYDEESADEPIPWWYNSVTGESTWDCPTALTAAAASSTSAAGVNADEPKAQNMELAIVKTVDKSTWTQLWSEEYQ 291
            EDGGQ Q+QLAVAGGNA+DWQMFYDEESADEPIPWWYNSVTGESTWDCPTAL AAAASST+AAGVN DEPKAQ+MELAIV+TVD STW QLWSEEYQ
Sbjct: 5371 EDGGQPQRQLAVAGGNASDWQMFYDEESADEPIPWWYNSVTGESTWDCPTALKAAAASSTTAAGVNEDEPKAQHMELAIVETVDISTWAQLWSEEYQ 5467
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig84.16522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPY8_ECTSI3.730e-4789.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig84contigE-siliculosus-1a_M_contig84:129102..130496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size597
Model size599
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EC2.3.2.27
EggNOG OGsKOG1327@1,KOG1327@2759
EggNOG free text desc.negative regulation of response to water deprivation
KEGG koko:K16280
Seed eggNOG ortholog2880.D8LPY8
Seed ortholog evalue4.5e-42
Seed ortholog score177.9
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936283.8842719-CDS-E-siliculosus-1a_M_contig84:129101..1294071622936283.8842719-CDS-E-siliculosus-1a_M_contig84:129101..129407Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 129102..129407 -
1696251007.6480656-CDS-E-siliculosus-1a_M_contig84:129101..1294071696251007.6480656-CDS-E-siliculosus-1a_M_contig84:129101..129407Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 129102..129407 -
1622936283.9073915-CDS-E-siliculosus-1a_M_contig84:130205..1304961622936283.9073915-CDS-E-siliculosus-1a_M_contig84:130205..130496Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 130206..130496 -
1696251007.6613414-CDS-E-siliculosus-1a_M_contig84:130205..1304961696251007.6613414-CDS-E-siliculosus-1a_M_contig84:130205..130496Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig84 130206..130496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig84.16522.1prot_E-siliculosus-1a_M_contig84.16522.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig84 129102..130496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig84.16522.1

>prot_E-siliculosus-1a_M_contig84.16522.1 ID=prot_E-siliculosus-1a_M_contig84.16522.1|Name=mRNA_E-siliculosus-1a_M_contig84.16522.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=199bp
EDGGQSQQQLAVAGGNANDWQMFYDEESADEPIPWWYNSVTGESTWDCPT
ALTAAAASSTSAAGVNADEPKAQNMELAIVKTVDKSTWTQLWSEEYQQVY
YYFNEATQEASWDAPATEKTTTTTEENCSGAQGEEGGDGGAGGVSHESHG
SDVDSGQNQPLVLPSLANSTSAGDNAESQFPFYVNERGNRVFCVPRRI*
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mRNA from alignment at E-siliculosus-1a_M_contig84:129102..130496-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig84.16522.1 ID=mRNA_E-siliculosus-1a_M_contig84.16522.1|Name=mRNA_E-siliculosus-1a_M_contig84.16522.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:129102..130496- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAAGACGGAGGTCAGTCACAACAGCAACTCGCCGTGGCGGGGGGAAATGC
GAACGACTGGCAAATGTTTTACGACGAGGAGTCTGCAGACGAGCCGATAC
CGTGGTGGTACAACTCCGTCACCGGGGAGTCCACGTGGGACTGCCCTACG
GCTTTGACGGCTGCTGCCGCGAGCTCGACAAGCGCCGCCGGAGTCAACGC
AGACGAGCCGAAGGCGCAGAACATGGAGCTCGCTATCGTTAAAACGGTCG
ACAAGTCCACATGGACCCAGTTGTGGAGCGAAGAGTATCAGGTACTTGCA
ACCTGTGGATTCATCGCACAGATATATGGTGGTTGATCCCCGTCCACCAC
TCATGTATACATGGCGATACTTGCCCTCGGCAGAAGGCACGGTTCTAACA
AATGGCGTGGCTCTCGGTGTGTGTCTCTGCGGAACGTATATGCTTGGTAT
CTCTGGTGAACTTGTCTATCTCCTTCCATTTTTTTGGGTGCTCGAATGCC
ATCAAAGGGCCTGGGGTGAACGTTTTACAATGCAATGGTGAACACCATGG
GAGTTTTTAGGACGGTTGCCCAGCTGGTCTACGGTATCGCCGTAGGAAAC
ATCGCAGTAGGAAACCTCGCAATACCTTCTAGCACCAGGATGCCGGTTCA
AATCCCTCTCGGGAGAAACAATGTGCGAATGGCGGAAAGTGATCTGTTTG
TGAGAATACACAAGAAGAGGAGATGGACGGCTGAACCCTTCTCGCGTCAA
GAACCGAAGGGAACAACCGTAGGGCGGCGGTGGGACAAACCGAATATTTC
TTGTTTTGCATCCAGGCGGCGGTGGGACAAACCGAATATTTCTTGTTTTG
CATCCTCCTGTTTGGCCTCGGCTGATTACGTCAAATGCTTACCGAAAAGG
TGAATGCTGGCCCTAGAACAGATTCGAAAGCACGTGAATCAACACACACA
TAAAAAGACCGTCTAATTAGGGTGTGAACGTTGCTACATGAACGCGCATC
CTTGTCTGGCACGTGTATTCGCCAAGAGAACCATCGAAAGCAGCCGCTGG
CTAGATGCTTTGTTAATCTCGCCCCCCCGACCCCACCAGCAGGTGTACTA
CTATTTCAACGAGGCCACCCAAGAGGCATCTTGGGACGCCCCCGCAACAG
AGAAAACAACGACGACGACCGAGGAAAATTGCTCCGGCGCCCAAGGGGAA
GAAGGAGGAGACGGTGGCGCGGGGGGTGTAAGCCACGAGAGTCACGGTTC
CGACGTCGACAGCGGCCAGAATCAACCTCTGGTTCTGCCATCTCTCGCCA
ACAGCACGAGTGCCGGCGACAACGCCGAGTCTCAGTTTCCATTTTATGTC
AACGAGCGAGGAAATAGGGTTTTCTGCGTACCGAGGAGAATATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig84:129102..130496-

>mRNA_E-siliculosus-1a_M_contig84.16522.1 ID=mRNA_E-siliculosus-1a_M_contig84.16522.1|Name=mRNA_E-siliculosus-1a_M_contig84.16522.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1194bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig84:129102..130496- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAAGACGGAGGTCAGTCACAACAGCAACTCGCCGTGGCGGGGGGAAATGC
GAACGACTGGCAAATGTTTTACGACGAGGAGTCTGCAGACGAGCCGATAC
CGTGGTGGTACAACTCCGTCACCGGGGAGTCCACGTGGGACTGCCCTACG
GCTTTGACGGCTGCTGCCGCGAGCTCGACAAGCGCCGCCGGAGTCAACGC
AGACGAGCCGAAGGCGCAGAACATGGAGCTCGCTATCGTTAAAACGGTCG
ACAAGTCCACATGGACCCAGTTGTGGAGCGAAGAGTATCAGGAAGACGGA
GGTCAGTCACAACAGCAACTCGCCGTGGCGGGGGGAAATGCGAACGACTG
GCAAATGTTTTACGACGAGGAGTCTGCAGACGAGCCGATACCGTGGTGGT
ACAACTCCGTCACCGGGGAGTCCACGTGGGACTGCCCTACGGCTTTGACG
GCTGCTGCCGCGAGCTCGACAAGCGCCGCCGGAGTCAACGCAGACGAGCC
GAAGGCGCAGAACATGGAGCTCGCTATCGTTAAAACGGTCGACAAGTCCA
CATGGACCCAGTTGTGGAGCGAAGAGTATCAGCAGGTGTACTACTATTTC
AACGAGGCCACCCAAGAGGCATCTTGGGACGCCCCCGCAACAGAGAAAAC
AACGACGACGACCGAGGAAAATTGCTCCGGCGCCCAAGGGGAAGAAGGAG
GAGACGGTGGCGCGGGGGGTGTAAGCCACGAGAGTCACGGTTCCGACGTC
GACAGCGGCCAGAATCAACCTCTGGTTCTGCCATCTCTCGCCAACAGCAC
GAGTGCCGGCGACAACGCCGAGTCTCAGTTTCCATTTTATGTCAACGAGC
GAGGAAATAGGGTTTTCTGCGTACCGAGGAGAATATAGCAGGTGTACTAC
TATTTCAACGAGGCCACCCAAGAGGCATCTTGGGACGCCCCCGCAACAGA
GAAAACAACGACGACGACCGAGGAAAATTGCTCCGGCGCCCAAGGGGAAG
AAGGAGGAGACGGTGGCGCGGGGGGTGTAAGCCACGAGAGTCACGGTTCC
GACGTCGACAGCGGCCAGAATCAACCTCTGGTTCTGCCATCTCTCGCCAA
CAGCACGAGTGCCGGCGACAACGCCGAGTCTCAGTTTCCATTTTATGTCA
ACGAGCGAGGAAATAGGGTTTTCTGCGTACCGAGGAGAATATAG
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