mRNA_E-siliculosus-1a_M_contig83.16510.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig83.16510.1 vs. uniprot
Match: D7FZG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZG4_ECTSI) HSP 1 Score: 860 bits (2222), Expect = 8.180e-303 Identity = 549/714 (76.89%), Postives = 554/714 (77.59%), Query Frame = 2
Query: 347 MIDDVLTSCLPVAAMAESTAAXXXXXXXXXXXXXXXXXXXXXXXXXASGVPLPRTPAVASTLXXXXXXXXXXXXGSVSSMDWD--PSPTSKQIAMPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSRRASGSIFADRVGITRIPDRAWTIALDYLELGEGMRCRQLGRVFRDTVEASLSVLALSGVNTITWATPDNLAFLTRFKNRGRGGRDRGXXXXXAADRYGAAAGEKTLRVADCCPVRAWSYLLGALTKIEEVIIVEGAETDEKALEEVWLHLLPLCRNLRSFFLNFEDYSQCPVDGDHPPINVKKFAVFLQAKRPFPKLRELHLELGSMSIAEQRSLIRGLSSSGLLPQLEKVTLGDGTTSYVRSPGRGPGRDLFAAFRKTPCLKLRVLWLQRLDLWDDLDALASALGPAHCPVLEELFLDLALDTDDVERLAGCLHKFPKSLKTLGVLAVAIKNRTQDGQFEMADPEPALQRLADALCKHPRPTLQCLDISLHYEPEAEEELPPDEPPQPPPFKARAATMPIIRLLKSGKLTGIKHVQLSSCSLDDSGLAIACKAVATMTGIQTLDISSNQLSLTGAKALAKALWRCRSLHEIVLEESVVPDDTAAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAAAGGQGLAYDAVADDEGAFNDEXXXXXXGQGDNGAFDLMDPHHWEAVDAESDGEVPPELMMDDDTD 2482
MIDDVLTSCLPVAAMAESTAAXXXXXXXXXXXXXXXX LPR P XXXXXXXXXXXX PSPTSKQIAMP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +SRRASG IFADRVGITRIPDRAWTIALDYLELGEGMRCRQLGR FRDTVEASLSVLALSGVNTITWATPDNLAFLTRFKN R ADRYGAAAGEKTLRVADCCPVRAWSYLLGALTK LEKVTLGDGTTSYVRSPGRGPGRDLFAAFRKTPC KLRVLWLQRLDLWDDLDALASALGPAHCPVLEELFLDLALDTDDVERLAGCLHKFPKSLKTLGVLAVAIKNRT+DGQFEMADPEPALQRLADALCKHPRPTLQCLDISLHYEPEAEEELPPDEPPQPPPFKARAATMPIIRLLKSGKLTGIKHVQLSSCSLDDSGLAIACKAVATMTGIQTLDISSNQLSLTGAKALAKALWRCRSLHEIVLEESVVPDDTAAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAAAGGQG AYDA+ADD+GAF+D XXXXXX G FDLMDPHHWEAVDAESDGEVPPELMMDDDTD
Sbjct: 1 MIDDVLTSCLPVAAMAESTAAXXXXXXXXXXXXXXXXS-------------LPRAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPTSKQIAMP-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMSRRASGLIFADRVGITRIPDRAWTIALDYLELGEGMRCRQLGRAFRDTVEASLSVLALSGVNTITWATPDNLAFLTRFKNV------RTLHWGGGADRYGAAAGEKTLRVADCCPVRAWSYLLGALTK-----------------------------------------------------------------------------------------------------LEKVTLGDGTTSYVRSPGRGPGRDLFAAFRKTPCAKLRVLWLQRLDLWDDLDALASALGPAHCPVLEELFLDLALDTDDVERLAGCLHKFPKSLKTLGVLAVAIKNRTEDGQFEMADPEPALQRLADALCKHPRPTLQCLDISLHYEPEAEEELPPDEPPQPPPFKARAATMPIIRLLKSGKLTGIKHVQLSSCSLDDSGLAIACKAVATMTGIQTLDISSNQLSLTGAKALAKALWRCRSLHEIVLEESVVPDDTAAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAAAGGQGQAYDALADDQGAFDDXXXXXXXXXXXXGGFDLMDPHHWEAVDAESDGEVPPELMMDDDTD 593
BLAST of mRNA_E-siliculosus-1a_M_contig83.16510.1 vs. uniprot
Match: A0A6H5KYL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYL0_9PHAE) HSP 1 Score: 711 bits (1834), Expect = 1.190e-247 Identity = 357/376 (94.95%), Postives = 364/376 (96.81%), Query Frame = 2
Query: 1355 MSIAEQRSLIRGLSSSGLLPQLEKVTLGDGTTSYVRSPGRGPGRDLFAAFRKTPCLKLRVLWLQRLDLWDDLDALASALGPAHCPVLEELFLDLALDTDDVERLAGCLHKFPKSLKTLGVLAVAIKNRTQDGQFEMADPEPALQRLADALCKHPRPTLQCLDISLHYEPEAEEELPPDEPPQPPPFKARAATMPIIRLLKSGKLTGIKHVQLSSCSLDDSGLAIACKAVATMTGIQTLDISSNQLSLTGAKALAKALWRCRSLHEIVLEESVVPDDTAAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAAAGGQGLAYDAVADDEGAFNDEXXXXXXGQGDNGAFDLMDPHHWEAVDAESDGEVPPELMMDDDTD 2482
MSIAEQRSLIRGLSSSGLLPQLEKVTLGDGTTSYVRSPGRGPGRDLFAAFRKTPC+KLRVLWLQRLDLWDDLDALASALGPAHCPVLEELFLDLALDTDDVERLAGCLHKFPKSLKTLGVLAVAIKNRTQDGQFEMADPEPALQRLADALCKHPRPTLQCLDISLHYEPEAEEELPPDEPPQPPPFKARAATMPIIRLLKSGKLTGIKHVQLSSCSLDDSGLAIACKAVATMTGIQTLDISSNQLSLTGAKALAKALWRCRSLHEIVLEESVVPDD AAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAAAGGQG A+DAVADD+GAF+DE GQ D+ FD+M PHHWEAVDAESDGEVPPEL+MDDDTD
Sbjct: 1 MSIAEQRSLIRGLSSSGLLPQLEKVTLGDGTTSYVRSPGRGPGRDLFAAFRKTPCVKLRVLWLQRLDLWDDLDALASALGPAHCPVLEELFLDLALDTDDVERLAGCLHKFPKSLKTLGVLAVAIKNRTQDGQFEMADPEPALQRLADALCKHPRPTLQCLDISLHYEPEAEEELPPDEPPQPPPFKARAATMPIIRLLKSGKLTGIKHVQLSSCSLDDSGLAIACKAVATMTGIQTLDISSNQLSLTGAKALAKALWRCRSLHEIVLEESVVPDDAAAVSAVFKEYMPWATVRVDDRDGRKNLARRYLAAAGGQGQAHDAVADDQGAFSDEEGGDNNGQEDDVVFDMMGPHHWEAVDAESDGEVPPELVMDDDTD 376
BLAST of mRNA_E-siliculosus-1a_M_contig83.16510.1 vs. uniprot
Match: A0A835Z7K9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K9_9STRA) HSP 1 Score: 309 bits (791), Expect = 2.380e-88 Identity = 194/490 (39.59%), Postives = 274/490 (55.92%), Query Frame = 2
Query: 860 VFRDTVEASLSVLALSGVNTIT--WATPDNLAFLTRFKNRGRGGRDRGXXXXXAADRY---GAAAGEKTLRVADCC--PVRAWSYLLGALTKIEEVIIVEGAETDEKALEEVWLHLLPLCR-NLRSFFLNFEDYSQCPVDG----DHPPINVKKFAVFLQAKRPFPKLRELHLELGSMSIAEQRSLIRGLSSSGLLPQLEKVTLGDGTTSYVRSPGRGPGRDLFAAFRKTPCLKLRVLWLQRLDLWDDLDALASALG-PAHCPVLEELFLDLALDTDDVERLAGCLHKFPKSLKTLGVLAVAIKNRTQDGQFEMADPEPALQRLADALCKHPRPTLQCLDISLHYE--PEAEEE---LPPDEPPQPPPFKARAATMPIIRLLKSGKLTGIKHVQLSSCSLDDSGLAIACKAVATMTGIQTLDISSNQLSLTGAKALAKALWRC-RSLHEIVLEESVVPDDTA-AVSAVFKEYMP-----WATVRVDDRDG 2254
V +D E + +A+ +NT+ W +P LA L +F+ R + D G+ E+T R + P+ W+YLL L + +V I EG T+E+ALEE+W +LPLC LR L+FE Y+ ++G DHPP+NVK AV L RPFP LRELHLEL SMSI EQRSL+RGL G+L +LE +T+G GT++Y R P +GPG+DL AA K L +LWLQRLD+WDD + + ALG PA CP L +L+LDL LD +D + LA LH P SLKTLG++ + I R G F+ PE ++ +A A+ HPR L+C+D+ LHYE P+ EE + P PP PP R +P++ L+ + H+QL +C L + A + +QTLDIS N++S + L AL ++EI+ EE V D+ A ++A+ + P W + +R+G
Sbjct: 133 VSKDVRERACETMAVMSLNTLKGDWVSPAALASLCKFR------RVKALHWCVGMDEEEEEGSEGHERT-RPEEWLGRPLMVWTYLLARLP-LTDVTITEGPATNEQALEELWERVLPLCAPTLRRLALSFEGYAAREMEGEQDVDHPPVNVKHLAVVLARDRPFPHLRELHLELNSMSITEQRSLVRGLGQGGVLQRLESLTIGGGTSAYAR-PAKGPGKDLAAAITKHGAPNLSLLWLQRLDIWDDFEGVFRALGDPALCPSLRQLYLDLTLDIEDSKALAAALHLCPPSLKTLGMMVMGITARDDQGNFKRCSPEAGVEVIAKAMLAHPRDDLECVDLCLHYEDAPDDNEEPEPIDPAHPPPPPGLSQRRDAVPLLEALRGAAAPRLLHLQLPNCRLTGKAFSEVLSTAAALPRLQTLDISGNEMSEVLVEELVAALTTSVPHVYEIMAEECVKTDEEANTLAALCRARAPRVKFSWKSRDAAEREG 613
BLAST of mRNA_E-siliculosus-1a_M_contig83.16510.1 vs. uniprot
Match: A0A835YQN0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQN0_9STRA) HSP 1 Score: 256 bits (653), Expect = 1.690e-68 Identity = 169/468 (36.11%), Postives = 238/468 (50.85%), Query Frame = 2
Query: 788 DRAWTIALDYLELGEGMRCRQLGRVFRDTVEASLSVLALSGVNTITWATPDNLAFLTRFKN----------------------RGRGGRD--RGXXXXXAADRYGAAAGEKTLRVADCC-----PVRAWSYLLGALTKIEEVIIVEGAETDEKALEEVWLHLLPLCR-NLRSFFLNFEDYSQCPVDGD--------------------------HPPINVKKFAVFLQAKRPFPKLRELHLELGSMSIAEQRSLIRGLSSSGLLPQLEKVTLGDGTTSYVRSPGRGPGRDLFAAFRKTPCLKLRVLWLQRLDLWDDLDALASALGPAH-CPVLEELFLDLALDTDDVERLAGCLHKFPKSLKTLGVLAVAIKNRTQDGQFEMADPEPALQRLADALCKHPRPTLQCLDISLHYEPEAE---EELPPDEPPQPPPFKARA--ATMPIIRLLKSGKLTGIKHVQLSSCSL 2005
D W +ALD+L+L + + + R +++VL+L GV W P LA +TRF+ G + + GAA +++ R P+ W++LL L ++ V I G DE AL E+W +LP C LR F L FE Y P GD +PPINVK+FA+ L + PFP LRELHLEL SMSI+EQRSL+RG++ GLL +LE +T+G GT+ Y R P G G++L A R+ LR+LWLQR D+WDD + SAL CP L+EL++D LD DD LA L P LKTLG++ +A++ R G F+ P PA+ +A AL + RP L C+D+ LH+EP E +E DE P PPP A++P++R ++G + ++H+QL +C L
Sbjct: 161 DAGWALALDFLDLHDVVAVTRTARELAHRAHETMTVLSLHGVRG-GWVGPHALAAITRFRRVRTLHWCVGALPAPPPPETPLVEPEDGEETYESRRHRCQSSSGGAARDDESRRHCPAQQWYGEPLMVWTFLLARLPLLD-VTITPGVANDEDALGELWERVLPACAPQLRRFALAFEGYQPPPPQGDXXXXXXXXXXXXXXXXXPSDQPPPIDYPPINVKRFALMLATRNPFPALRELHLELSSMSISEQRSLVRGITQGGLLARLECLTMGGGTSVYAR-PKIGAGQELATALREHGAPNLRLLWLQRFDVWDDFPGVFSALSDRTLCPALKELYIDATLDHDDTLALAAALPLVPTCLKTLGMMVMALRERDHLGYFKRVSPVPAVTAIATALLEAQRPQLGCVDLCLHFEPPQEGETDEWYSDELPPPPPADKSPVDASIPLLRAFQAGAVPNMRHLQLPNCRL 625
BLAST of mRNA_E-siliculosus-1a_M_contig83.16510.1 vs. uniprot
Match: A0A6H5L111_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L111_9PHAE) HSP 1 Score: 219 bits (558), Expect = 1.270e-61 Identity = 162/218 (74.31%), Postives = 164/218 (75.23%), Query Frame = 2
Query: 194 MSFRGRPSLSGTPGRSSLEPSSDSLDLAKLRADLVAARELTCFQARPDCQSMIDDVLTSCLPVAAMAESTAAXXXXXXXXXXXXXXXXXXXXXXXXXASGVPLPRTPAVASTLXXXXXXXXXXXXGSVSSMDWDPSPTSKQIAMPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----ALSRRASGSIFADRVGITRIPDRAWTIALDYLELGE 832
MSFRGRPSLSGTPGRSSLEPSSDSLDLAKLRADLVAARELTCFQARPDCQSMIDDVLTSCLP+AAMAE T+A XXXXXX AS VPL RTPA XXXXXXXXXXXX VSSMDWDPSPTSKQIAMPP X XXXXXXXXXXX LSRRASGSIFADRVGITRIPDRAWTIALDYLELGE
Sbjct: 1 MSFRGRPSLSGTPGRSSLEPSSDSLDLAKLRADLVAARELTCFQARPDCQSMIDDVLTSCLPLAAMAEFTSAAPAARLGAAAADSAAEXXXXXXPVDASVVPLTRTPAXXXXXXXXXXXXXXXXXXXVSSMDWDPSPTSKQIAMPPSSSSIGGGAGRGGSXVSRSGXXXXXXXXXXXXXXXGVLSRRASGSIFADRVGITRIPDRAWTIALDYLELGE 218 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig83.16510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig83.16510.1 >prot_E-siliculosus-1a_M_contig83.16510.1 ID=prot_E-siliculosus-1a_M_contig83.16510.1|Name=mRNA_E-siliculosus-1a_M_contig83.16510.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=828bp MILRTKPPAYPYPDCGAPCHCCVQLAGCACCASTKQTARQPRCCCVWSRRback to top mRNA from alignment at E-siliculosus-1a_M_contig83:655985..673339- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig83.16510.1 ID=mRNA_E-siliculosus-1a_M_contig83.16510.1|Name=mRNA_E-siliculosus-1a_M_contig83.16510.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=17355bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:655985..673339- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig83:655985..673339- >mRNA_E-siliculosus-1a_M_contig83.16510.1 ID=mRNA_E-siliculosus-1a_M_contig83.16510.1|Name=mRNA_E-siliculosus-1a_M_contig83.16510.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4968bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:655985..673339- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |