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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig83.16452.1 vs. uniprot
Match: D7G8D6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D6_ECTSI) HSP 1 Score: 319 bits (817), Expect = 2.780e-105 Identity = 166/173 (95.95%), Postives = 169/173 (97.69%), Query Frame = 1
Query: 1 MPEPRVPRFRVPAALVSPASLFLVGGIVYYFSLDKPSEDELNSNIGKEFPDVVRGRHEVDDRMKEFFKRVNNNDPREEERMRDLLNKGKGSHYSAKRRHATTKDIEEFGFVSKPAGASSSQTAPXXXXXXX--MSPLAENKRPPGWGSKTIPSQKPAVEEEGGAPRRRWWRFW 513
MPEPRVPRFRVPAALVSPASLFLVGGIVYYFSLDKPSEDELNSNIGKEFPDVVRGRHEVDDRMKEFFKRVNNNDPREEERMRDLLNKGKGSHYSAKRRHATTKDIEEFGF+SKPAG SSSQTAPXXXXXXX ++PLAENKRPPGWGSKTIPSQKPAVEEEGG PRRRWWRFW
Sbjct: 1 MPEPRVPRFRVPAALVSPASLFLVGGIVYYFSLDKPSEDELNSNIGKEFPDVVRGRHEVDDRMKEFFKRVNNNDPREEERMRDLLNKGKGSHYSAKRRHATTKDIEEFGFISKPAGTSSSQTAPXXXXXXXXXIAPLAENKRPPGWGSKTIPSQKPAVEEEGGTPRRRWWRFW 173
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 516 |
| Model size | 1378 |
| Exons | 3 |
| Ec32 ortholog | Ec-19_004060.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | signal anchor |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936265.2973866-UTR-E-siliculosus-1a_M_contig83:49239..50101 | 1622936265.2973866-UTR-E-siliculosus-1a_M_contig83:49239..50101 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig83 49240..50101 - |
| 1696250998.332142-UTR-E-siliculosus-1a_M_contig83:49239..50101 | 1696250998.332142-UTR-E-siliculosus-1a_M_contig83:49239..50101 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig83 49240..50101 - |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig83.16452.1 >prot_E-siliculosus-1a_M_contig83.16452.1 ID=prot_E-siliculosus-1a_M_contig83.16452.1|Name=mRNA_E-siliculosus-1a_M_contig83.16452.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=172bp
MPEPRVPRFRVPAALVSPASLFLVGGIVYYFSLDKPSEDELNSNIGKEFP
DVVRGRHEVDDRMKEFFKRVNNNDPREEERMRDLLNKGKGSHYSAKRRHA
TTKDIEEFGFVSKPAGASSSQTAPAATTTTTMSPLAENKRPPGWGSKTIP
SQKPAVEEEGGAPRRRWWRFW* back to topmRNA from alignment at E-siliculosus-1a_M_contig83:49240..52072- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig83.16452.1 ID=mRNA_E-siliculosus-1a_M_contig83.16452.1|Name=mRNA_E-siliculosus-1a_M_contig83.16452.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2833bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:49240..52072- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGGAGCCGAGAGTGCCGAGGTTTAGGGTGCCCGCGGCATTGGTGTC
GCCGGCGTCGCTGTTTCTCGTCGGCGGCATCGTGTACTACTTTTCCTTGG
ACAAGCCTTCCGAAGACGAGCTCAACAGCAACATCGGCAAGGAGTTTCCC
GACGTGAGTTTTTCGCTTCGTGGATGCCGCTGGCTTGTAGGATTTTACTC
GGCACCAATCTTCGGCGCGCGCGCATGGCCGGCCGGCCACTCGGTTGCTG
CGTTTGTGCGAGGGGGTTTCTGTGGTTGGCCGCGTTTTTGACGCGGAGTC
ACGTATACAGCTATGATAGCGCCCGCACTTACGAACTGGGCAGCCAAGAA
ATTGAGCCTCGAAAAATGCAAGATATAAGAACTTGAAGCACCGTGGGTAA
GCGCGGTTAAGAACCTCTACACCAAAACCTATATAGCGGTCATTGTAGCA
TATCACTAGGAACTATGAACCCTCGGCTAATACTAGAGGTTCTTAGGTTT
GGGCACTAGCTGCAGGCATTTCTTTGGACCTTTCGAGCAGTGAAGCGTTT
GTTGCGTCAGTGGGGGAGTGTTTCGCGAAAGCAATGACGGTGTGTGATCA
TGGTGCAAGGCTGAGAAGCACACTTTGCTCGGGTCGTGGCAAAGAGCTCA
GTTACGGCGGAAGCCGAACTTCCAAGCCAGAAAGAGTTCGCACCTCTCCC
CCCTCCCCACCCCACCCCGCGATAATGCAGGCACGCAGACAAGGCGATTA
GAGGCATGGGATCCAATATCGACGGTCATTTTTCAAACGCTGTGCCACGA
TTTAAAGGGATGGTGAAAGCGACGTAGAGTGTCAAGCCAAGTATTGCCAT
GCTTGCATGGCGTTTTTCCTGCGGCCGGCGAACATTCCTACCCCACGGCA
AAGACGAAACCTAGTGCTGAAAACAGCGTCGATGCATCGTGGCAAGTTCT
TCCGGGCACCGAAAGATAAGGAATTCGGGAGGGTCTAGAGCAACTTCATT
CGACGAGGGCATCTCTGTTTTTTTTTAAGGAAACGCAGAAGGCACAAGAG
TCGGCGACTATTTTGTTCTCTGTTTCTTTTGGGCGACAGGTGGTTCGTGG
TCGTCATGAAGTGGACGACCGAATGAAGGAGTTCTTCAAACGGGTCAACA
ACAACGACCCCAGAGAGGTGAGAGACTATTGGGCCTCAACGTCGCGGGCG
CGGATGGCGGCGCCGCTGCGCTTGCTCAGACACAAAAAAACTGCTGCTTG
CTCAGACATAGAAAAAAAAATTCAACATGTAGAAATGCATGCTCCTTAAC
AATCACACACAATCACACCATTAGACTCGCCGGCACTGGCTAGGGCTAGA
CTGAGGTTTTCGATTTGGGCTTGTATTAAAAGGCCGTGGGGTGGGGTCCG
GATGACCCGACGCTTTCACTCCAAGGAGAGTGACTCCCCTCGCCACCAGC
TCCTCGGAGTTGACCCTTCGCGGTTTAGAGTTCAACTCGACGCCGACGAC
GTCGAAGCAACCGCCGCATCACAGATGTTGGTCCTGTGCAGAGAGGGTAT
GGTCACTTTTGTGCTTGTTTTCCCCCGTGAGTTGCTGGCTTGTCTCATAT
CCCAGAACCGTTTCGAACAAGTGAGCCCACTTGTGCTGCTTGTTTTCGTG
AATTAAACCGTTGCGTATACCCCCGCCGCCTTAAAGGAGGAGCGCATGCG
AGACCTCCTCAATAAAGGGAAAGGGTCCCACTACAGCGCCAAGCGTCGGC
ACGCCACGACCAAGGACATCGAGGAGTTCGGCTTCGTCTCCAAGCCTGCC
GGCGCTTCCTCCTCTCAGACGGCACCGGCGGCGACAACGACAACAACAAT
GTCTCCGTTGGCCGAGAACAAGCGACCACCAGGCTGGGGGTCGAAGACCA
TCCCGTCGCAGAAGCCGGCGGTTGAGGAGGAGGGGGGGGCGCCGAGACGA
CGGTGGTGGAGATTCTGGTGATAGTACCAACGAACAAAACAATCGCACTC
GCTGTGTATGCGCAACGGCTGCTTTTCCCCAAATGAATCGAGTTTCAAGT
TTCTCGACGAGAGGCTGGTGCGCGTCCTGCCCCGGTGCAGGGAGGGTCAC
GCGCGGTTACCGCCAAGAGACAATAACGGCTTGGGATTTCGTGAGCAGAG
AGGAAGTCACGGTCACTTCGCGCTGGGGGGATTGCCCCGAACTGATGTGG
GTCTACATTTCGTGGTGTGTATTCGTAGATGATCTGAACCAACAAAGCGT
GTGTGTGGAAGTGTGTAACGATTTTTGAGGGTCGCCGGTTCTTGCTCTCA
CGGTAACTCTTCTGGCGGGCGATGCTGAGCGGCCTGGTGAGGGGTACCCA
GGCTTCTTGGTAACACTGGCTCGGGAGGAGCGACGAGAAAACACACCGAC
GGCAGTGCCTTCTTTCGCTCAAGCTCATCGCGTGACGACGCTGTTGGCCG
GGACTTTTTCGTATGTTTCTTGGTGTGACCATTCATTGGAGCACGTACAG
TACTCGGCAGAAAAATTCCACGAGCCCTGACTTAAAGTGATGACAAGAAA
AAATCCGTTCGCTGTTTGGTGGGGGCATGCGTTCTTTGCGCCAGGATTGT
TTTCGGCCGGAAGAGCCCACTGCTGTTTGGGAGCTGACGATTTGCTCCTG
CTGTTGCAGCCTTTGTAGACCACAAAACTAGAAGCGCGTCCTCAATGTAT
TTTGTCATAGTAGGCACCCCGCACAGCAGTCCGCTGGTACATGAGCGGCC
AAGGGTGGCACGAGGAGCAAGCAGACTCTGTGGGTTTCTGCCCAGTTTTC
GCCTAGCACGGAGACTCCTGACATCGTGCCCAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig83:49240..52072- >mRNA_E-siliculosus-1a_M_contig83.16452.1 ID=mRNA_E-siliculosus-1a_M_contig83.16452.1|Name=mRNA_E-siliculosus-1a_M_contig83.16452.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1032bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig83:49240..52072- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCCGGAGCCGAGAGTGCCGAGGTTTAGGGTGCCCGCGGCATTGGTGTC
GCCGGCGTCGCTGTTTCTCGTCGGCGGCATCGTGTACTACTTTTCCTTGG
ACAAGCCTTCCGAAGACGAGCTCAACAGCAACATCGGCAAGGAGTTTCCC
GACATGCCGGAGCCGAGAGTGCCGAGGTTTAGGGTGCCCGCGGCATTGGT
GTCGCCGGCGTCGCTGTTTCTCGTCGGCGGCATCGTGTACTACTTTTCCT
TGGACAAGCCTTCCGAAGACGAGCTCAACAGCAACATCGGCAAGGAGTTT
CCCGACGTGGTTCGTGGTCGTCATGAAGTGGACGACCGAATGAAGGAGTT
CTTCAAACGGGTCAACAACAACGACCCCAGAGAGGTGGTTCGTGGTCGTC
ATGAAGTGGACGACCGAATGAAGGAGTTCTTCAAACGGGTCAACAACAAC
GACCCCAGAGAGGAGGAGCGCATGCGAGACCTCCTCAATAAAGGGAAAGG
GTCCCACTACAGCGCCAAGCGTCGGCACGCCACGACCAAGGACATCGAGG
AGTTCGGCTTCGTCTCCAAGCCTGCCGGCGCTTCCTCCTCTCAGACGGCA
CCGGCGGCGACAACGACAACAACAATGTCTCCGTTGGCCGAGAACAAGCG
ACCACCAGGCTGGGGGTCGAAGACCATCCCGTCGCAGAAGCCGGCGGTTG
AGGAGGAGGGGGGGGCGCCGAGACGACGGTGGTGGAGATTCTGGTGAGAG
GAGCGCATGCGAGACCTCCTCAATAAAGGGAAAGGGTCCCACTACAGCGC
CAAGCGTCGGCACGCCACGACCAAGGACATCGAGGAGTTCGGCTTCGTCT
CCAAGCCTGCCGGCGCTTCCTCCTCTCAGACGGCACCGGCGGCGACAACG
ACAACAACAATGTCTCCGTTGGCCGAGAACAAGCGACCACCAGGCTGGGG
GTCGAAGACCATCCCGTCGCAGAAGCCGGCGGTTGAGGAGGAGGGGGGGG
CGCCGAGACGACGGTGGTGGAGATTCTGGTGA back to top
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