mRNA_E-siliculosus-1a_M_contig82.16436.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig82.16436.1
Unique NamemRNA_E-siliculosus-1a_M_contig82.16436.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: D7G294_ECTSI (18S rRNA aminocarboxypropyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G294_ECTSI)

HSP 1 Score: 469 bits (1208), Expect = 1.040e-161
Identity = 275/283 (97.17%), Postives = 278/283 (98.23%), Query Frame = 2
Query:   41 MERDRPLKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAQGDSWRRNGGAAREMIDRERDESGQLAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEEEYGDHGSEN 889
            MERDRPLKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     HAQGDSWRRNGGAAREMIDRERDESG+LAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAV+VMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEEEYG+HGSEN
Sbjct:    1 MERDRPLKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----HAQGDSWRRNGGAAREMIDRERDESGELAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEEEYGNHGSEN 278          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: A0A835YJ70_9STRA (18S rRNA aminocarboxypropyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ70_9STRA)

HSP 1 Score: 309 bits (792), Expect = 8.820e-99
Identity = 147/218 (67.43%), Postives = 178/218 (81.65%), Query Frame = 2
Query:  212 NGGAAREMIDRERDESGQLAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEEE 865
            +GG A E  D +   +   A+ + V LRMWDFEQCD K+CTGR+LCRLG ++EM+LGAPF GLVLSPNGE TVSP DRE+V+TLG+SVIDCSWARLD++PFHQMRRGHHRLLPFLVAANPVNYGKP KLTCAEA+AATL IVG +++   VMDQFGWG EFL++N DVL+ YAAC+ GAEV+ AQAA+LA+CE EA +RR     +DM+PP+Y   +E
Sbjct:   52 SGGRAAETADEQEGAAAAAAKGLGVRLRMWDFEQCDPKRCTGRRLCRLGFIKEMDLGAPFQGLVLSPNGEKTVSPEDREIVDTLGISVIDCSWARLDDVPFHQMRRGHHRLLPFLVAANPVNYGKPFKLTCAEALAATLVIVGLREQGALVMDQFGWGPEFLKINADVLDRYAACSSGAEVITAQAAYLAQCEAEAAARR---RPDDMLPPAYDSSDE 266          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: A0A8K1C8Q2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8Q2_PYTOL)

HSP 1 Score: 256 bits (653), Expect = 3.310e-77
Identity = 125/201 (62.19%), Postives = 156/201 (77.61%), Query Frame = 2
Query:  206 RRNGGAAREMIDRERDESGQLAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSR 808
            RR+G AA      E  E     +S  V+LRMWDF+QCD K+CTGRK+CRLG V+ M+ G PF G+VLSP GE  VSPAD E+V +LG+SVIDCSWA++ E+P+ Q+R G+HRLLPFLVAAN VNYG+P KLTCAEAIAATLYIVG +DEAV+V+++F WG EFL++N + LE YAAC   A+VV+AQ A+LA CEEE  +R
Sbjct:   32 RRDGAAAPRERGEEETEINFKRRSFPVTLRMWDFQQCDSKRCTGRKMCRLGYVKSMKPGQPFRGIVLSPAGEQAVSPADLEIVTSLGISVIDCSWAKVQELPYKQLRSGYHRLLPFLVAANSVNYGRPHKLTCAEAIAATLYIVGMKDEAVQVLEEFQWGMEFLKINFECLEAYAACETSADVVEAQNAYLAACEEELRAR 232          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: G4ZJA7_PHYSP (18S rRNA aminocarboxypropyltransferase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZJA7_PHYSP)

HSP 1 Score: 251 bits (642), Expect = 4.810e-76
Identity = 123/192 (64.06%), Postives = 151/192 (78.65%), Query Frame = 2
Query:  272 QSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPS 847
            ++  V+LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE  VSPADR +VE  G+SVIDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATLYIVG +DEAV++MD+F WGAEFL++N D LE YAAC D A+VV AQ A+LA C+ E   R     ++ MM PS
Sbjct:   40 RAFPVTLRMWDFQQCDSKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGESIVSPADRGIVEGTGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLKDEAVQLMDEFSWGAEFLKINADCLEAYAACEDSAQVVAAQEAYLAACQAENEQR-----LQRMMLPS 226          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: A0A2D4BYV1_PYTIN (18S rRNA aminocarboxypropyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYV1_PYTIN)

HSP 1 Score: 251 bits (642), Expect = 1.280e-75
Identity = 126/227 (55.51%), Postives = 165/227 (72.69%), Query Frame = 2
Query:  206 RRNGGAAREMIDRERDESGQ----LAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEEEYGD 874
            R++ G    ++ +ER+E         +S  ++LRMWDF+QCD K+CTGRKLCRL  V+ M+ G PF G+VLSP GE  +SPADRE+VETLG+SVIDCSWA++ E+P+ Q+R G+HRLLPF   AN VNYGKP KL+CAEAIAATLYIVG +DEAV++M++F WG EFL++N D LE YAAC + A+VV+AQ A+LA CEEE  +R     +  +      D EE G+
Sbjct:   26 RKSRGRDAPVVSQEREEGESEISFKRRSFPITLRMWDFQQCDSKRCTGRKLCRLAYVKSMKPGQPFRGIVLSPAGEQALSPADREIVETLGISVIDCSWAKVQELPYKQLRSGYHRLLPF--HANTVNYGKPYKLSCAEAIAATLYIVGMKDEAVQIMEEFSWGMEFLKINMDCLEAYAACENSAQVVEAQNAYLAACEEEHKARSRRFDLPSLDSDGEDDYEEEGE 250          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: A0A3M6VVZ0_9STRA (18S rRNA aminocarboxypropyltransferase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VVZ0_9STRA)

HSP 1 Score: 248 bits (633), Expect = 3.120e-74
Identity = 118/194 (60.82%), Postives = 151/194 (77.84%), Query Frame = 2
Query:  245 ERDESGQLAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSM 826
            E  E+    ++  V+LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE  VS AD ++V + G+SVIDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATLYIVG QDEA++VMD+F WGAEFL++N D L+ YAAC + AEVV+AQ A+LA C+ E   R+  + +
Sbjct:   31 EESETNYRRRAFPVTLRMWDFQQCDAKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGEQAVSRADLDLVTSSGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLQDEAIQVMDEFSWGAEFLKINADCLQAYAACTNSAEVVEAQNAYLAACQTEQKERQQHMDL 224          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: K3WFG3_GLOUD (18S rRNA aminocarboxypropyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFG3_GLOUD)

HSP 1 Score: 247 bits (631), Expect = 1.090e-73
Identity = 124/206 (60.19%), Postives = 156/206 (75.73%), Query Frame = 2
Query:  245 ERDESGQLAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEE 862
            E  E+    +S  V+LRMWDF+QCD K+CTGRKLCR G V+ M+ GA F GLVLSP GE  VSPADRE+V ++G+SVIDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATL+IVG QDEA +VM++F WG EF+++N D LE YAAC +  EV+ AQ A+LA CE+E   +RD     D+ P   SD+E
Sbjct:   46 EESEANFKRRSFPVTLRMWDFQQCDSKRCTGRKLCRFGYVKSMKPGAHFRGLVLSPAGEQIVSPADREIVTSIGISVIDCSWAKVQELPYKQVRSGAHRLLPFLVAANSVNYGRPYKLSCAEAIAATLFIVGLQDEAFQVMEEFPWGMEFMKINMDCLEAYAACENSEEVIAAQNAYLAACEQE---QRDRAKRFDL-PSLESDDE 247          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: A0A329RNH6_9STRA (18S rRNA aminocarboxypropyltransferase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RNH6_9STRA)

HSP 1 Score: 242 bits (617), Expect = 2.110e-73
Identity = 118/206 (57.28%), Postives = 154/206 (74.76%), Query Frame = 2
Query:  245 ERDESGQLAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEE 862
            E  E     ++  V+LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE  VSP+DR +VE  G+SVIDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+C+EAIAATLYIVG ++EAV++MD+F WG EFL++N D LE YAAC +  +VV+AQ A+LA C+ E   R   +++  +     S+EE
Sbjct:   26 EESEVNYRRRAFPVTLRMWDFQQCDSKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGEHIVSPSDRSIVEGTGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCSEAIAATLYIVGLKEEAVQLMDEFTWGPEFLKINADCLEAYAACENSEQVVEAQNAYLAACQTEHEQRLLRMNLPTVESDEESEEE 231          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: A0A3R7H3K7_9STRA (18S rRNA aminocarboxypropyltransferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H3K7_9STRA)

HSP 1 Score: 245 bits (626), Expect = 2.640e-73
Identity = 115/188 (61.17%), Postives = 149/188 (79.26%), Query Frame = 2
Query:  245 ERDESGQLAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSR 808
            E  E+    ++  V+LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE  VSPADR++VE +G+SVIDCSWA++ ++P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATLYIVG ++EA +VM++F WG EFL++N D LE Y+AC +  EVV+AQ A+LA C+ E + R
Sbjct:   31 EESETSYRRRAFPVTLRMWDFQQCDSKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGEQAVSPADRDIVEGIGISVIDCSWAKVQDLPYKQLRSGTHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGMKEEAKQVMEEFSWGEEFLKINADCLEAYSACENSTEVVEAQNAYLAACQTEHDQR 218          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: A0A6A3KBB7_9STRA (18S rRNA aminocarboxypropyltransferase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KBB7_9STRA)

HSP 1 Score: 245 bits (626), Expect = 3.720e-73
Identity = 119/191 (62.30%), Postives = 149/191 (78.01%), Query Frame = 2
Query:  272 QSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPP 844
            ++  V+LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE  VSPADR +V+  G+S IDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATLYIVG +DEAV++MD+F WGAEFL++N D LE YAAC + AEVV+AQ A+L  C+ E   R     M+ M+ P
Sbjct:   40 RAFPVTLRMWDFQQCDSKRCTGRKLCRLGYIQSMKPGAHFRGLVLSPAGEQVVSPADRGIVQGSGISAIDCSWAKVQELPYKQVRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLKDEAVQLMDEFSWGAEFLKINADCLEAYAACENSAEVVEAQTAYLTACQTEHEQR-----MQRMLLP 225          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G294_ECTSI1.040e-16197.1718S rRNA aminocarboxypropyltransferase n=2 Tax=Ect... [more]
A0A835YJ70_9STRA8.820e-9967.4318S rRNA aminocarboxypropyltransferase n=1 Tax=Tri... [more]
A0A8K1C8Q2_PYTOL3.310e-7762.19Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4ZJA7_PHYSP4.810e-7664.0618S rRNA aminocarboxypropyltransferase n=1 Tax=Phy... [more]
A0A2D4BYV1_PYTIN1.280e-7555.5118S rRNA aminocarboxypropyltransferase n=1 Tax=Pyt... [more]
A0A3M6VVZ0_9STRA3.120e-7460.8218S rRNA aminocarboxypropyltransferase n=2 Tax=Per... [more]
K3WFG3_GLOUD1.090e-7360.1918S rRNA aminocarboxypropyltransferase n=1 Tax=Glo... [more]
A0A329RNH6_9STRA2.110e-7357.2818S rRNA aminocarboxypropyltransferase n=2 Tax=Phy... [more]
A0A3R7H3K7_9STRA2.640e-7361.1718S rRNA aminocarboxypropyltransferase n=3 Tax=Phy... [more]
A0A6A3KBB7_9STRA3.720e-7362.3018S rRNA aminocarboxypropyltransferase n=2 Tax=Phy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig82contigE-siliculosus-1a_M_contig82:615671..621458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1095
Model size1449
Exons7
Ec32 orthologEc-16_002000.1
Ec32 ortholog descriptionRNase L inhibitor RLI, possible metal-binding domain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsCOG2042@1,KOG3154@2759
EggNOG free text desc.rRNA processing
GOsGO:0000154,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016740,GO:0022613,GO:0030490,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0071704,GO:0071840,GO:0090304,GO:1901360
KEGG koko:K09140
Preferred nameTSR3
Seed eggNOG ortholog2880.D7G294
Seed ortholog evalue1.9e-131
Seed ortholog score475.7
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936260.0970874-UTR-E-siliculosus-1a_M_contig82:615670..6159841622936260.0970874-UTR-E-siliculosus-1a_M_contig82:615670..615984Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 615671..615984 -
1696250996.350565-UTR-E-siliculosus-1a_M_contig82:615670..6159841696250996.350565-UTR-E-siliculosus-1a_M_contig82:615670..615984Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 615671..615984 -
1622936260.2835603-UTR-E-siliculosus-1a_M_contig82:621418..6214581622936260.2835603-UTR-E-siliculosus-1a_M_contig82:621418..621458Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 621419..621458 -
1696250996.445115-UTR-E-siliculosus-1a_M_contig82:621418..6214581696250996.445115-UTR-E-siliculosus-1a_M_contig82:621418..621458Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 621419..621458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936260.1215358-CDS-E-siliculosus-1a_M_contig82:615984..6161781622936260.1215358-CDS-E-siliculosus-1a_M_contig82:615984..616178Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 615985..616178 -
1696250996.36866-CDS-E-siliculosus-1a_M_contig82:615984..6161781696250996.36866-CDS-E-siliculosus-1a_M_contig82:615984..616178Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 615985..616178 -
1622936260.1440363-CDS-E-siliculosus-1a_M_contig82:616831..6170061622936260.1440363-CDS-E-siliculosus-1a_M_contig82:616831..617006Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 616832..617006 -
1696250996.3776274-CDS-E-siliculosus-1a_M_contig82:616831..6170061696250996.3776274-CDS-E-siliculosus-1a_M_contig82:616831..617006Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 616832..617006 -
1622936260.1652544-CDS-E-siliculosus-1a_M_contig82:617692..6178121622936260.1652544-CDS-E-siliculosus-1a_M_contig82:617692..617812Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 617693..617812 -
1696250996.387302-CDS-E-siliculosus-1a_M_contig82:617692..6178121696250996.387302-CDS-E-siliculosus-1a_M_contig82:617692..617812Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 617693..617812 -
1622936260.1919491-CDS-E-siliculosus-1a_M_contig82:618997..6191231622936260.1919491-CDS-E-siliculosus-1a_M_contig82:618997..619123Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 618998..619123 -
1696250996.3986526-CDS-E-siliculosus-1a_M_contig82:618997..6191231696250996.3986526-CDS-E-siliculosus-1a_M_contig82:618997..619123Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 618998..619123 -
1622936260.2366464-CDS-E-siliculosus-1a_M_contig82:619635..6197101622936260.2366464-CDS-E-siliculosus-1a_M_contig82:619635..619710Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 619636..619710 -
1696250996.4094849-CDS-E-siliculosus-1a_M_contig82:619635..6197101696250996.4094849-CDS-E-siliculosus-1a_M_contig82:619635..619710Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 619636..619710 -
1622936260.2511082-CDS-E-siliculosus-1a_M_contig82:620289..6203781622936260.2511082-CDS-E-siliculosus-1a_M_contig82:620289..620378Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 620290..620378 -
1696250996.4208095-CDS-E-siliculosus-1a_M_contig82:620289..6203781696250996.4208095-CDS-E-siliculosus-1a_M_contig82:620289..620378Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 620290..620378 -
1622936260.2657433-CDS-E-siliculosus-1a_M_contig82:621102..6214181622936260.2657433-CDS-E-siliculosus-1a_M_contig82:621102..621418Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 621103..621418 -
1696250996.4317145-CDS-E-siliculosus-1a_M_contig82:621102..6214181696250996.4317145-CDS-E-siliculosus-1a_M_contig82:621102..621418Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 621103..621418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig82.16436.1prot_E-siliculosus-1a_M_contig82.16436.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig82 615985..621418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig82.16436.1

>prot_E-siliculosus-1a_M_contig82.16436.1 ID=prot_E-siliculosus-1a_M_contig82.16436.1|Name=mRNA_E-siliculosus-1a_M_contig82.16436.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=365bp
MERDRPLKGKGGGKRVKGRGGGGGGGGGGRGRGGRPKSSQGRGHGHRHHA
QGDSWRRNGGAAREMIDRERDESGQLAQSITVSLRMWDFEQCDVKKCTGR
KLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSW
ARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVG
HQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCE
EEANSRRDAVSMEDMMPPSYSDEEEYGDHGSENGSENGSENGSSEGVTER
EIAEERAEEKESWTGGGDGGKRNGEPCPADEEEAVSDAASDSRGAAAAAA
AVADGGDAVEQEPR*
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mRNA from alignment at E-siliculosus-1a_M_contig82:615671..621458-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig82.16436.1 ID=mRNA_E-siliculosus-1a_M_contig82.16436.1|Name=mRNA_E-siliculosus-1a_M_contig82.16436.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5788bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:615671..621458- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCAAGGCCGCTGCACAGGGCGTGAGAGCAGCACCGCTAGCATGGAGCGTG ACAGACCACTGAAAGGAAAGGGTGGAGGGAAGAGAGTTAAAGGTAGAGGC GGCGGCGGTGGCGGCGGCGGTGGCGGTCGCGGCAGGGGCGGTAGGCCAAA GTCGTCACAAGGCCGGGGTCACGGCCACCGACATCATGCTCAAGGCGACA GCTGGCGGAGGAACGGAGGAGCAGCACGGGAGATGATCGATCGCGAGAGG GACGAGTCGGGGCAATTGGCCCAATCCATCACTGTCAGCCTCCGCATGTG GGACTTCGAGCAGTGTGACGTGAAGAAGTGCACGGGTCGCAAGCTTTGCC GGCTCGGTGAGAACAGCGGCGGCACAGTAGTAGTGGTGGACAGCAGTAGT TGACACTGCTGTAGAAGTAACTGCTGTTTAGTGTGGTATGGAGGTCATGG ATGGTCTTGTTCCGCAAGCAACTGCTTGCTACTTCGGCGTGATCGTATGG TGTAGCGCTTATGGTGCTGGCACAGCAGTAGTTATTTATGTCCGCGCAGA GGCCTCACCTTCGTCACAAACCCGCTGTGCATTGAATATACTAGGACTGC TGTTGACAGACCGACCAAGTCGATTGCCGAGGCGCACCACACCTCCAGTA CGGGAAGACCCCACAGCAATCCAGTCACTGCTGTAGTCTAAATAGCGGCA GACCACAGCAGTATTTAGTGCTGTTTGACGACTGCTGCCAAGGCCCTCAT GTAAATGCCGTACATGGTGCGGACGTTTTTGCCTGTGTGTTGTCGTGCCC TTCACAGAAATATCGGGCGCTAGAGCGTTCTTTTTGAACCGTTAGTGGGT CTACAAGCTCGGCGAGCTATTAGCTGCTGCATAGCGATGCAGCAGGAACT GGAGTGTGTAGACTCCCTCATGAGTACACGAACAGGTGGTGCAAGCGCGT GCTCTGTAGAGTCAAAGCAGCGTGTAACTCTGCCGAGCAACCGTGACGCG TTATCCCAACCATGCGTTACCCACCTGCTGTGGTTTCACACTCTTGCTTG CTTTCCGACTCCCCCCCCCCCCGTTCCCAGGACTCGTGCGGGAAATGGAG CTTGGCGCACCGTTCTCGGGACTGGTGCTCAGCCCCAACGGCGAACTAAC GGTGTCGCCCGCCGACAGGGTAAGCTCGGGGAGGGGGAAGGGGGGGTGGG GGCGGAATGTATTTCACGATCAAGCGGGTTGTGTACTCTGTAGCATTCAT GTCTGGTCTATTTGCCGTGCTGAAGGGCGCGCTCTGCGCGTGGGACACGC TCGCAACGCCTTGTAACCCGTGTATGCTCTCGGCCTTTGTGGCACCGTAG AACCTGTGTCCCTCGTGAAGCCGGAATTACGATTACGGAGTAGCCGCAGG CTTGTGGACGTTTTCCATGCCACTGAATTCCAGGCAACGCCAATCCATTC CATAAAATCTGGTGGTGTTTTGCAACGTTTATGTCCTGGGTGTCGCCGAA CGTACACACGTACTACCACACGGTACTTTTGTTCGTTGTACTGATGCTGC CCACGTAGACGCCCCTCTTGGCTTTGATCTTGCGCGTTGACGATGCTCTT GGTTGTCTGTTTCACCCCCGCACGTCCCCAGCTTCGCTAGGTCTTCTTTT TGTCACTGTGAATGTCGTCGCCCTCATTGTTGTCCTCACCCCCCCCTGCC CCTGTCCCCCTCCCTCAAATGTAATCTCCCTCTCACGACCCGCCACAGGA GGTCGTCGAGACGCTGGGCATGTCGGTGATAGACTGCTCGTGGGCGCGAC TCGACGAGATACCTTTCCACCAGGTACGTGTCGTCCGCAAAAGACACCAG CAGGTAGTCGTGGCTTCGTGTCCGCCCCTGCTCCCGGCGGTGTGTTTAGC TGTATTGGTACCTACGCGTTGTTGGGCCATCTGCCCCGCGGGGAACAGCA AGAGGGGTGCAGCCTTTACCCATACATACCGCGATCATGACCATCGTCTC TCGGAGGGATCGGGTGCCCTGCATCCCCCCCCTCCATTCCCGACATGTAT CATCCGTCCCGATGACGGTAGCCTTCGTTCATCCCGACGATATGGATACC TACGCTCCAGTATGCTGCTGTTCCTCCGTTCACGTCCGGCGATCTAGCGT GCGGCCTTCTGAACCGGACTTCGAGCTAGAGAACAAATCGCTTCGCTCGA GAACACAGCAGCATTAGAGTAGCGAGCGTAATATGCGGAGGATTTGGCAG GTCGCGTGTGGTCTCTTCTCTCCTTTCGTTGTTCCTCGTCCGAATTTCTT CGCTCGCGTTTTTGCTGCTCCGACCTTGCCTTCAGATGCGGAGAGGCCAC CACCGCCTGCTCCCTTTCCTCGTCGCGGCAAACCCGGTCAACTACGGGAA ACCCATGAAGCTCACGTGCGCGGAGGCAATAGCGGCCACTCTGTACATCG TGGGGCACCAGGTATGGTGGGAACTTGTTTGCTCATTCATGAACTCTGGG ATCGTGAGTTGTTGTGCTTTTTTTGTTTTGAATTGAACCGGACTGGAAGA CCAATCACAATCGTATGCCTTGGCTGAAGGTGATGCGATGACGTTACTGC TGCCATGATTGGCCCACGTTTTCGCGTCCTTGCTGCACGGTTGGACGTCC TCTCGACATGCGGAGACGTACGTCAGTTGGTGCCTGGCATACTTTGCAAA ATGGAAGAAAAGACGAATTCAGATGACGGTCAGAACGCATATGTACAAGA TGAGATGAGGACATACCAGAACACACACGAGACTATCAGATATTAGCAGG GTTATTCTAGATTGCACTATTTAGGCGAGCACGGCAGAAGGAAAGTGCGG ACACCTTGAGAAAACCTCTCATGTTGTATGGCCTTTCTCGTGTGTGACAC AGGCTGGCGCGTGCAAAACCCGTACCGAATAGGTGGAACAATAGACGTCC TGAAATGAAGGGGATGACGCACACGCATGCGTGTCTCTGGAAGGATACGA ACAGTACGGCAACGCTACGGAGGAAGGAGCGTGTGTTGCTTGCACCCACA AGAGCATATAAACATGCCCATGCAAGAGTTTTGTTTTTATCGCTTGGCAC AATGATGAATCCGCAGGGTGGAAAGAGATCCAACGAAAGCACTCAACGTT ACGTGGCCCGAAACAGTGCAAACGTGTGGCTTTCGAACGGGTGCTTGGGG GGAGCATACCATGAGATTCGGGATGACCACCGACCGCACAGACGGGCGAC CGTCTTCCTCAATTTTCTCGGTTCATCTCTTTTGGCACAAACACACTTGA GGCAACCCATCACCATCACACCCTGACTATCAACATTTCCCCCGAAAGCG CATGAGAGTATCTCCCGCCCTTCTTTTGTGAGCGGTTACTTGATTTTTTT TTCCCAACTTGCCGTGTGTTGTTGACACAAACGTCCCGTGCGAAGCTGTT GCGACCCGTACGCTCACTCCGACTCTTACGGCTCAAGAATAGACGGGTGT GTTCTTGAATCCTTGCGAACACGCTTCTAGGTTCTTTCTTTTTGTGTGTT TGGCTTCTCGCACGGGTGTCTTCTTGAATCCTTGCGAACACGCTTCTAAG TGTTTTGTTGTTGTTGTTGTTGTTGTGTGTGGCTTCTCGCGCTTAGGACG AGGCCGTGAGGGTGATGGACCAGTTCGGGTGGGGGGCGGAGTTCCTGCGC GTGAACGAGGATGTCCTGGAGACCTACGCGGCGTGCGCGGACGGGGCCGA GGTCGTCAAGGCCCAAGTGAGTGTGTGTAACGGCGGCGGGATTATTTGCC CGGCGGCGTTTTTTTGTGTTTCCACTTCGCCGGATCGGCCTGGGGGGTAA TACTATTGGGAGCAACGTCGTGTTCTTGGTGCCTTGACGTCAGTGTTTTT TTTTTTTAGTAGATGCTTGGTTTTCGAATCTGATCGTTTGGTACTTACGG AGCAGCGCAACAGAGGTGTACTGGTACGGATTTTACCTTTTTTTCGTGCA GCCCCTCTGTGCTGTGTGGTCAGGTGGTGTACCGCCTGACGCGCTTCTAC CAATGTTCGGCCTTGTTGGTCTCTGTTCTTCTGGTGTTGTGTTTTTTTGG CGGTCTGCGTTGTTTGTTGTTGGTATGATCCAAAAGACAACAACATGATC CGATCTGCTGCGTAAGGGGATTTTTTTTTTATCACACGTGTCATTCGTAT TTTTGTTGGGGCGGTACCTTGCTGCCCCTTCCCTCCCCCATACAACGCAC ATCCCTTGCATCGTCCATTCCCCGCCCCCGTCTACCTTTCGTGTTGTCAG TTTTTGTATTTCTGCGATGTCCTTGCTGCTGTTCTTCGTTGTCTACGTTT TGAACAACACTGTTCCACCTTTCACCCAAGGAACACGAAAAAACAACGTA CTCCGTCCGAATCCCGTCGTTTGTTTGTCTTGGTTTCGATTTTTTCAAAA AGGCGGCGTTTTTGGCACGATGCGAGGAAGAGGCCAACTCCCGCCGCGAC GCCGTCTCGATGGAGGACATGATGCCTCCCTCGTACTCCGACGAAGAGGA GTACGGCGACCACGGTTCTGAGAACGGTTCCGAGAACGGTTCCGAGAATG GTTCTTCTGAAGGCGTTACGGAGAGAGGCAAGTTCTGCGACGCTCTGTTG ATACCCGCGGCGGTAATAGTGGCATCTGTTTTGTTTTTGTTGCTCATCCC TTGCGGCTACATAGTCACCGCAGATGTGAAGACCGGACAGCGGTGGAGGC CCGCACGAGAGATAGAGGGACCGATGGAAATTCGCCCACGTTTTTTGTGT GGCATGTGTGCGAGGCATGCAGGACGATTATGTGTCAAGTTTCTCAACCC GGGGCGATGTGTTTCTGAGGCCCACGTAAAGGAAAAAAAATTGTGTGCAG CGTTGGTCAGAGTAGCGCGAGAACGGAAGGGCGGCAGGGCATCGAATGAA TGGACGGGTGAACGCGATTTGGTGTCTGGTCGCCATTGCGAAAACCCGTG TATACAACACAATGTAGAGGGAACAGCCACGATCGATTTCTGCTAGTCGC TGGGTACCCCACCCCCTTCTGCTTCTATCCTACAAGTAGACTGCCGTTTT CGGTTCTCTTCTCAACTTCTCAAGGAGAAGGAAGGCGCCGAGTGGCCCGA CGGGGAGGGCCGGCACGAGAAAAGACAAACTCGTAAGAAAAAGTAAGGCC CCGTCACTCACCTCTGCTCGCCCGGCCGTTTTCCGCTGCGTCTCCCCGAA AAATAAATCTTGGGGCTGAATTTCTCGCAGAAATTGCCGAAGAGCGCGCG GAGGAGAAGGAGAGCTGGACCGGTGGCGGTGACGGCGGAAAGAGAAACGG CGAGCCGTGTCCGGCGGACGAGGAGGAGGCTGTCTCTGATGCTGCTTCAG ACAGCCGAGGGGCGGCGGCGGCGGCGGCAGCGGTGGCGGATGGAGGAGAT GCTGTCGAGCAAGAACCCCGATAGCCACGACCGCTAGCCGGTAGTGGGCG ATAGAGATGTAGGTCGCGAAAAGCTCATGTACCAATCGTGATCCTCTTCA GAGTGAACCAACCGTAAGTAGAAGCAAAGCACCTCGGTGGCTGAAGAGTG CTGCGATGTGATCGGTACTCATGTAGATGTCGGATGGCTTCGGGATTTTC GGAGATTGCAATTTTTGTTGTACATAGTGGGGTCTTGAAGGGTGTTTTCG AGCGTGTATATCTCTTGTTTTGGTTTTTCTGTAGCGGCCTGGCAATGATA GCGAACAGATTGGATTGTGGACTTTTTTTGGGGGGGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig82:615671..621458-

>mRNA_E-siliculosus-1a_M_contig82.16436.1 ID=mRNA_E-siliculosus-1a_M_contig82.16436.1|Name=mRNA_E-siliculosus-1a_M_contig82.16436.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2190bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:615671..621458- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGAGCGTGACAGACCACTGAAAGGAAAGGGTGGAGGGAAGAGAGTTAA
AGGTAGAGGCGGCGGCGGTGGCGGCGGCGGTGGCGGTCGCGGCAGGGGCG
GTAGGCCAAAGTCGTCACAAGGCCGGGGTCACGGCCACCGACATCATGCT
CAAGGCGACAGCTGGCGGAGGAACGGAGGAGCAGCACGGGAGATGATCGA
TCGCGAGAGGGACGAGTCGGGGCAATTGGCCCAATCCATCACTGTCAGCC
TCCGCATGTGGGACTTCGAGCAGTGTGACGTGAAGAAGTGCACGGGTCGC
AAGCTTTGCCGGCTCGATGGAGCGTGACAGACCACTGAAAGGAAAGGGTG
GAGGGAAGAGAGTTAAAGGTAGAGGCGGCGGCGGTGGCGGCGGCGGTGGC
GGTCGCGGCAGGGGCGGTAGGCCAAAGTCGTCACAAGGCCGGGGTCACGG
CCACCGACATCATGCTCAAGGCGACAGCTGGCGGAGGAACGGAGGAGCAG
CACGGGAGATGATCGATCGCGAGAGGGACGAGTCGGGGCAATTGGCCCAA
TCCATCACTGTCAGCCTCCGCATGTGGGACTTCGAGCAGTGTGACGTGAA
GAAGTGCACGGGTCGCAAGCTTTGCCGGCTCGGACTCGTGCGGGAAATGG
AGCTTGGCGCACCGTTCTCGGGACTGGTGCTCAGCCCCAACGGCGAACTA
ACGGTGTCGCCCGCCGACAGGGACTCGTGCGGGAAATGGAGCTTGGCGCA
CCGTTCTCGGGACTGGTGCTCAGCCCCAACGGCGAACTAACGGTGTCGCC
CGCCGACAGGGAGGTCGTCGAGACGCTGGGCATGTCGGTGATAGACTGCT
CGTGGGCGCGACTCGACGAGATACCTTTCCACCAGGAGGTCGTCGAGACG
CTGGGCATGTCGGTGATAGACTGCTCGTGGGCGCGACTCGACGAGATACC
TTTCCACCAGATGCGGAGAGGCCACCACCGCCTGCTCCCTTTCCTCGTCG
CGGCAAACCCGGTCAACTACGGGAAACCCATGAAGCTCACGTGCGCGGAG
GCAATAGCGGCCACTCTGTACATCGTGGGGCACCAGATGCGGAGAGGCCA
CCACCGCCTGCTCCCTTTCCTCGTCGCGGCAAACCCGGTCAACTACGGGA
AACCCATGAAGCTCACGTGCGCGGAGGCAATAGCGGCCACTCTGTACATC
GTGGGGCACCAGGACGAGGCCGTGAGGGTGATGGACCAGTTCGGGTGGGG
GGCGGAGTTCCTGCGCGTGAACGAGGATGTCCTGGAGACCTACGCGGCGT
GCGCGGACGGGGCCGAGGTCGTCAAGGCCCAAGACGAGGCCGTGAGGGTG
ATGGACCAGTTCGGGTGGGGGGCGGAGTTCCTGCGCGTGAACGAGGATGT
CCTGGAGACCTACGCGGCGTGCGCGGACGGGGCCGAGGTCGTCAAGGCCC
AAGCGGCGTTTTTGGCACGATGCGAGGAAGAGGCCAACTCCCGCCGCGAC
GCCGTCTCGATGGAGGACATGATGCCTCCCTCGTACTCCGACGAAGAGGA
GTACGGCGACCACGGTTCTGAGAACGGTTCCGAGAACGGTTCCGAGAATG
GTTCTTCTGAAGGCGTTACGGAGAGAGGCGGCGTTTTTGGCACGATGCGA
GGAAGAGGCCAACTCCCGCCGCGACGCCGTCTCGATGGAGGACATGATGC
CTCCCTCGTACTCCGACGAAGAGGAGTACGGCGACCACGGTTCTGAGAAC
GGTTCCGAGAACGGTTCCGAGAATGGTTCTTCTGAAGGCGTTACGGAGAG
AGAAATTGCCGAAGAGCGCGCGGAGGAGAAGGAGAGCTGGACCGGTGGCG
GTGACGGCGGAAAGAGAAACGGCGAGCCGTGTCCGGCGGACGAGGAGGAG
GCTGTCTCTGATGCTGCTTCAGACAGCCGAGGGGCGGCGGCGGCGGCGGC
AGCGGTGGCGGATGGAGGAGATGCTGTCGAGCAAGAACCCCGATAGAAAT
TGCCGAAGAGCGCGCGGAGGAGAAGGAGAGCTGGACCGGTGGCGGTGACG
GCGGAAAGAGAAACGGCGAGCCGTGTCCGGCGGACGAGGAGGAGGCTGTC
TCTGATGCTGCTTCAGACAGCCGAGGGGCGGCGGCGGCGGCGGCAGCGGT
GGCGGATGGAGGAGATGCTGTCGAGCAAGAACCCCGATAG
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