mRNA_E-siliculosus-1a_M_contig82.16436.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: D7G294_ECTSI (18S rRNA aminocarboxypropyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G294_ECTSI) HSP 1 Score: 469 bits (1208), Expect = 1.040e-161 Identity = 275/283 (97.17%), Postives = 278/283 (98.23%), Query Frame = 2
Query: 41 MERDRPLKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAQGDSWRRNGGAAREMIDRERDESGQLAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEEEYGDHGSEN 889
MERDRPLKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX HAQGDSWRRNGGAAREMIDRERDESG+LAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAV+VMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEEEYG+HGSEN
Sbjct: 1 MERDRPLKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----HAQGDSWRRNGGAAREMIDRERDESGELAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVKVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEEEYGNHGSEN 278
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: A0A835YJ70_9STRA (18S rRNA aminocarboxypropyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ70_9STRA) HSP 1 Score: 309 bits (792), Expect = 8.820e-99 Identity = 147/218 (67.43%), Postives = 178/218 (81.65%), Query Frame = 2
Query: 212 NGGAAREMIDRERDESGQLAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEEE 865
+GG A E D + + A+ + V LRMWDFEQCD K+CTGR+LCRLG ++EM+LGAPF GLVLSPNGE TVSP DRE+V+TLG+SVIDCSWARLD++PFHQMRRGHHRLLPFLVAANPVNYGKP KLTCAEA+AATL IVG +++ VMDQFGWG EFL++N DVL+ YAAC+ GAEV+ AQAA+LA+CE EA +RR +DM+PP+Y +E
Sbjct: 52 SGGRAAETADEQEGAAAAAAKGLGVRLRMWDFEQCDPKRCTGRRLCRLGFIKEMDLGAPFQGLVLSPNGEKTVSPEDREIVDTLGISVIDCSWARLDDVPFHQMRRGHHRLLPFLVAANPVNYGKPFKLTCAEALAATLVIVGLREQGALVMDQFGWGPEFLKINADVLDRYAACSSGAEVITAQAAYLAQCEAEAAARR---RPDDMLPPAYDSSDE 266
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: A0A8K1C8Q2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8Q2_PYTOL) HSP 1 Score: 256 bits (653), Expect = 3.310e-77 Identity = 125/201 (62.19%), Postives = 156/201 (77.61%), Query Frame = 2
Query: 206 RRNGGAAREMIDRERDESGQLAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSR 808
RR+G AA E E +S V+LRMWDF+QCD K+CTGRK+CRLG V+ M+ G PF G+VLSP GE VSPAD E+V +LG+SVIDCSWA++ E+P+ Q+R G+HRLLPFLVAAN VNYG+P KLTCAEAIAATLYIVG +DEAV+V+++F WG EFL++N + LE YAAC A+VV+AQ A+LA CEEE +R
Sbjct: 32 RRDGAAAPRERGEEETEINFKRRSFPVTLRMWDFQQCDSKRCTGRKMCRLGYVKSMKPGQPFRGIVLSPAGEQAVSPADLEIVTSLGISVIDCSWAKVQELPYKQLRSGYHRLLPFLVAANSVNYGRPHKLTCAEAIAATLYIVGMKDEAVQVLEEFQWGMEFLKINFECLEAYAACETSADVVEAQNAYLAACEEELRAR 232
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: G4ZJA7_PHYSP (18S rRNA aminocarboxypropyltransferase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZJA7_PHYSP) HSP 1 Score: 251 bits (642), Expect = 4.810e-76 Identity = 123/192 (64.06%), Postives = 151/192 (78.65%), Query Frame = 2
Query: 272 QSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPS 847
++ V+LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE VSPADR +VE G+SVIDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATLYIVG +DEAV++MD+F WGAEFL++N D LE YAAC D A+VV AQ A+LA C+ E R ++ MM PS
Sbjct: 40 RAFPVTLRMWDFQQCDSKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGESIVSPADRGIVEGTGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLKDEAVQLMDEFSWGAEFLKINADCLEAYAACEDSAQVVAAQEAYLAACQAENEQR-----LQRMMLPS 226
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: A0A2D4BYV1_PYTIN (18S rRNA aminocarboxypropyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYV1_PYTIN) HSP 1 Score: 251 bits (642), Expect = 1.280e-75 Identity = 126/227 (55.51%), Postives = 165/227 (72.69%), Query Frame = 2
Query: 206 RRNGGAAREMIDRERDESGQ----LAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEEEYGD 874
R++ G ++ +ER+E +S ++LRMWDF+QCD K+CTGRKLCRL V+ M+ G PF G+VLSP GE +SPADRE+VETLG+SVIDCSWA++ E+P+ Q+R G+HRLLPF AN VNYGKP KL+CAEAIAATLYIVG +DEAV++M++F WG EFL++N D LE YAAC + A+VV+AQ A+LA CEEE +R + + D EE G+
Sbjct: 26 RKSRGRDAPVVSQEREEGESEISFKRRSFPITLRMWDFQQCDSKRCTGRKLCRLAYVKSMKPGQPFRGIVLSPAGEQALSPADREIVETLGISVIDCSWAKVQELPYKQLRSGYHRLLPF--HANTVNYGKPYKLSCAEAIAATLYIVGMKDEAVQIMEEFSWGMEFLKINMDCLEAYAACENSAQVVEAQNAYLAACEEEHKARSRRFDLPSLDSDGEDDYEEEGE 250
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: A0A3M6VVZ0_9STRA (18S rRNA aminocarboxypropyltransferase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VVZ0_9STRA) HSP 1 Score: 248 bits (633), Expect = 3.120e-74 Identity = 118/194 (60.82%), Postives = 151/194 (77.84%), Query Frame = 2
Query: 245 ERDESGQLAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSM 826
E E+ ++ V+LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE VS AD ++V + G+SVIDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATLYIVG QDEA++VMD+F WGAEFL++N D L+ YAAC + AEVV+AQ A+LA C+ E R+ + +
Sbjct: 31 EESETNYRRRAFPVTLRMWDFQQCDAKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGEQAVSRADLDLVTSSGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLQDEAIQVMDEFSWGAEFLKINADCLQAYAACTNSAEVVEAQNAYLAACQTEQKERQQHMDL 224
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: K3WFG3_GLOUD (18S rRNA aminocarboxypropyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFG3_GLOUD) HSP 1 Score: 247 bits (631), Expect = 1.090e-73 Identity = 124/206 (60.19%), Postives = 156/206 (75.73%), Query Frame = 2
Query: 245 ERDESGQLAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEE 862
E E+ +S V+LRMWDF+QCD K+CTGRKLCR G V+ M+ GA F GLVLSP GE VSPADRE+V ++G+SVIDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATL+IVG QDEA +VM++F WG EF+++N D LE YAAC + EV+ AQ A+LA CE+E +RD D+ P SD+E
Sbjct: 46 EESEANFKRRSFPVTLRMWDFQQCDSKRCTGRKLCRFGYVKSMKPGAHFRGLVLSPAGEQIVSPADREIVTSIGISVIDCSWAKVQELPYKQVRSGAHRLLPFLVAANSVNYGRPYKLSCAEAIAATLFIVGLQDEAFQVMEEFPWGMEFMKINMDCLEAYAACENSEEVIAAQNAYLAACEQE---QRDRAKRFDL-PSLESDDE 247
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: A0A329RNH6_9STRA (18S rRNA aminocarboxypropyltransferase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RNH6_9STRA) HSP 1 Score: 242 bits (617), Expect = 2.110e-73 Identity = 118/206 (57.28%), Postives = 154/206 (74.76%), Query Frame = 2
Query: 245 ERDESGQLAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPPSYSDEE 862
E E ++ V+LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE VSP+DR +VE G+SVIDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+C+EAIAATLYIVG ++EAV++MD+F WG EFL++N D LE YAAC + +VV+AQ A+LA C+ E R +++ + S+EE
Sbjct: 26 EESEVNYRRRAFPVTLRMWDFQQCDSKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGEHIVSPSDRSIVEGTGISVIDCSWAKVQELPYKQLRSGVHRLLPFLVAANSVNYGRPHKLSCSEAIAATLYIVGLKEEAVQLMDEFTWGPEFLKINADCLEAYAACENSEQVVEAQNAYLAACQTEHEQRLLRMNLPTVESDEESEEE 231
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: A0A3R7H3K7_9STRA (18S rRNA aminocarboxypropyltransferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H3K7_9STRA) HSP 1 Score: 245 bits (626), Expect = 2.640e-73 Identity = 115/188 (61.17%), Postives = 149/188 (79.26%), Query Frame = 2
Query: 245 ERDESGQLAQSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSR 808
E E+ ++ V+LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE VSPADR++VE +G+SVIDCSWA++ ++P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATLYIVG ++EA +VM++F WG EFL++N D LE Y+AC + EVV+AQ A+LA C+ E + R
Sbjct: 31 EESETSYRRRAFPVTLRMWDFQQCDSKRCTGRKLCRLGYIKSMKPGAHFRGLVLSPAGEQAVSPADRDIVEGIGISVIDCSWAKVQDLPYKQLRSGTHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGMKEEAKQVMEEFSWGEEFLKINADCLEAYSACENSTEVVEAQNAYLAACQTEHDQR 218
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Match: A0A6A3KBB7_9STRA (18S rRNA aminocarboxypropyltransferase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KBB7_9STRA) HSP 1 Score: 245 bits (626), Expect = 3.720e-73 Identity = 119/191 (62.30%), Postives = 149/191 (78.01%), Query Frame = 2
Query: 272 QSITVSLRMWDFEQCDVKKCTGRKLCRLGLVREMELGAPFSGLVLSPNGELTVSPADREVVETLGMSVIDCSWARLDEIPFHQMRRGHHRLLPFLVAANPVNYGKPMKLTCAEAIAATLYIVGHQDEAVRVMDQFGWGAEFLRVNEDVLETYAACADGAEVVKAQAAFLARCEEEANSRRDAVSMEDMMPP 844
++ V+LRMWDF+QCD K+CTGRKLCRLG ++ M+ GA F GLVLSP GE VSPADR +V+ G+S IDCSWA++ E+P+ Q+R G HRLLPFLVAAN VNYG+P KL+CAEAIAATLYIVG +DEAV++MD+F WGAEFL++N D LE YAAC + AEVV+AQ A+L C+ E R M+ M+ P
Sbjct: 40 RAFPVTLRMWDFQQCDSKRCTGRKLCRLGYIQSMKPGAHFRGLVLSPAGEQVVSPADRGIVQGSGISAIDCSWAKVQELPYKQVRSGVHRLLPFLVAANSVNYGRPHKLSCAEAIAATLYIVGLKDEAVQLMDEFSWGAEFLKINADCLEAYAACENSAEVVEAQTAYLTACQTEHEQR-----MQRMLLP 225 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig82.16436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig82.16436.1 >prot_E-siliculosus-1a_M_contig82.16436.1 ID=prot_E-siliculosus-1a_M_contig82.16436.1|Name=mRNA_E-siliculosus-1a_M_contig82.16436.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=365bp MERDRPLKGKGGGKRVKGRGGGGGGGGGGRGRGGRPKSSQGRGHGHRHHAback to top mRNA from alignment at E-siliculosus-1a_M_contig82:615671..621458- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig82.16436.1 ID=mRNA_E-siliculosus-1a_M_contig82.16436.1|Name=mRNA_E-siliculosus-1a_M_contig82.16436.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5788bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:615671..621458- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig82:615671..621458- >mRNA_E-siliculosus-1a_M_contig82.16436.1 ID=mRNA_E-siliculosus-1a_M_contig82.16436.1|Name=mRNA_E-siliculosus-1a_M_contig82.16436.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2190bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:615671..621458- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |