mRNA_E-siliculosus-1a_M_contig82.16428.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig82.16428.1
Unique NamemRNA_E-siliculosus-1a_M_contig82.16428.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig82.16428.1 vs. uniprot
Match: A0A6H5JD07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD07_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 2.700e-57
Identity = 103/114 (90.35%), Postives = 108/114 (94.74%), Query Frame = 3
Query:  189 AYWGYWIVLFVTTIFTWIFAVAAAADDAWIEDFSKAGLGDSCDGYDFCGLYKAATAFQYLATIVISVVLVAVVVAAFMPAPTTGKLGLAVGIMLFVFALFELIAFCTYAAYIEE 530
            AYWGYWIVLFVTTIFTWIFAVAAAADDAWI D  +AGLG+SCDGYDFCGLYKAATAFQYLATIV+SVVLV VVVAAF PAP TGKLGLAVGIMLFVFA+FEL+AFCTYAAYIEE
Sbjct:    5 AYWGYWIVLFVTTIFTWIFAVAAAADDAWIADAYEAGLGESCDGYDFCGLYKAATAFQYLATIVVSVVLVMVVVAAFTPAPVTGKLGLAVGIMLFVFAVFELLAFCTYAAYIEE 118          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16428.1 vs. uniprot
Match: D7FWH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWH1_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 6.040e-30
Identity = 80/173 (46.24%), Postives = 103/173 (59.54%), Query Frame = 3
Query:  201 YWIVLFVTTIFTWIFAVAAAADDAWI--EDFSKAGLGDSCD-GYDFCGLYKAATAFQYLATIVISVVLVAVVVAAFMPAPTTGKLGLAVGIMLFVFALFELIAFCTYAAYIEEL--EDSSYYVSYYSGVYSVDYSPGPTLAVAVVAFIFGLVGAIVTCILRNKATTEQDGPFR 704
            YW V F T I TW+FAVAAA+DDAW+  E +    LG+ C+    FC  YK  TAFQ+ A IVIS  +V ++VAAF PAP TG+LG A G ML VF++ +L AF   AA    L  ++ +Y+              GPT+ VAV+A++FGL G     +LR  AT  QDGP R
Sbjct:   49 YWAVCFATAI-TWLFAVAAASDDAWLQFEGYPLLKLGERCEFSASFCDYYKTGTAFQFFAAIVISATVVVMIVAAFKPAPATGRLGAAAGTMLLVFSVLQLAAFSIMAASAGRLNRDNDNYF----------QIKAGPTIGVAVIAWVFGLAGGSAILLLRPHATPGQDGPLR 210          
BLAST of mRNA_E-siliculosus-1a_M_contig82.16428.1 vs. uniprot
Match: A0A6H5KJK8_9PHAE (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJK8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.010e-11
Identity = 61/171 (35.67%), Postives = 87/171 (50.88%), Query Frame = 3
Query:  237 WIFAVAAAADDAWIE-DFSKAGLGDS-----CDGYD-FCGLYKAATAFQYLATIVISVVLVAVVVAAFMPAP-----TTGKLGLAVGIMLFVFALFELIAFCTYAAYIEELEDSSYYVSYYSGVYSVDYSPGPTLAVAVVAFIFGLVGAIVTCILRNKATTEQDGPFRACM 713
            W+FAVAA+ADD W + D    G GD      CD  D  C LYKA TA Q++A +V+SV +V   +A F PA      +   L +A G ++  FA FE++AF       +EL+       + +G    +   G T  +AVVA + G+V A+        A +  DGPF  C+
Sbjct:   89 WVFAVAASADDKWAKIDGFDIGAGDEDILDDCDSSDDVCSLYKAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLKCCSVKSLAIAAGSLMMAFAFFEMLAFVLIIVIEKELDGE-----FNTGFGFGEADLGATFGLAVVAVVLGVVQAVSVLTF---ARSSGDGPFFKCL 251          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig82.16428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JD07_9PHAE2.700e-5790.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWH1_ECTSI6.040e-3046.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJK8_9PHAE1.010e-1135.67WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig82contigE-siliculosus-1a_M_contig82:526562..536862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size813
Model size2459
Exons5
Ec32 orthologEc-26_006660.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorysignal anchor
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936258.9691458-UTR-E-siliculosus-1a_M_contig82:526561..5281661622936258.9691458-UTR-E-siliculosus-1a_M_contig82:526561..528166Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 526562..528166 -
1696250995.8384151-UTR-E-siliculosus-1a_M_contig82:526561..5281661696250995.8384151-UTR-E-siliculosus-1a_M_contig82:526561..528166Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 526562..528166 -
1622936259.0879023-UTR-E-siliculosus-1a_M_contig82:536821..5368621622936259.0879023-UTR-E-siliculosus-1a_M_contig82:536821..536862Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 536822..536862 -
1696250995.9120448-UTR-E-siliculosus-1a_M_contig82:536821..5368621696250995.9120448-UTR-E-siliculosus-1a_M_contig82:536821..536862Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig82 536822..536862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936258.987052-CDS-E-siliculosus-1a_M_contig82:528166..5284891622936258.987052-CDS-E-siliculosus-1a_M_contig82:528166..528489Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 528167..528489 -
1696250995.8487258-CDS-E-siliculosus-1a_M_contig82:528166..5284891696250995.8487258-CDS-E-siliculosus-1a_M_contig82:528166..528489Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 528167..528489 -
1622936259.0034106-CDS-E-siliculosus-1a_M_contig82:528927..5291191622936259.0034106-CDS-E-siliculosus-1a_M_contig82:528927..529119Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 528928..529119 -
1696250995.859498-CDS-E-siliculosus-1a_M_contig82:528927..5291191696250995.859498-CDS-E-siliculosus-1a_M_contig82:528927..529119Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 528928..529119 -
1622936259.0199676-CDS-E-siliculosus-1a_M_contig82:530236..5303871622936259.0199676-CDS-E-siliculosus-1a_M_contig82:530236..530387Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 530237..530387 -
1696250995.8712363-CDS-E-siliculosus-1a_M_contig82:530236..5303871696250995.8712363-CDS-E-siliculosus-1a_M_contig82:530236..530387Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 530237..530387 -
1622936259.0430565-CDS-E-siliculosus-1a_M_contig82:536049..5361811622936259.0430565-CDS-E-siliculosus-1a_M_contig82:536049..536181Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 536050..536181 -
1696250995.886137-CDS-E-siliculosus-1a_M_contig82:536049..5361811696250995.886137-CDS-E-siliculosus-1a_M_contig82:536049..536181Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 536050..536181 -
1622936259.066737-CDS-E-siliculosus-1a_M_contig82:536806..5368211622936259.066737-CDS-E-siliculosus-1a_M_contig82:536806..536821Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 536807..536821 -
1696250995.8967113-CDS-E-siliculosus-1a_M_contig82:536806..5368211696250995.8967113-CDS-E-siliculosus-1a_M_contig82:536806..536821Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig82 536807..536821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig82.16428.1prot_E-siliculosus-1a_M_contig82.16428.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig82 528167..536821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig82.16428.1

>prot_E-siliculosus-1a_M_contig82.16428.1 ID=prot_E-siliculosus-1a_M_contig82.16428.1|Name=mRNA_E-siliculosus-1a_M_contig82.16428.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=271bp
MVTMQPPPAYSGGEQAPPSYSGNQAPPSYGGNQAPPAYSGEGGKRQNPGA
YWGYWIVLFVTTIFTWIFAVAAAADDAWIEDFSKAGLGDSCDGYDFCGLY
KAATAFQYLATIVISVVLVAVVVAAFMPAPTTGKLGLAVGIMLFVFALFE
LIAFCTYAAYIEELEDSSYYVSYYSGVYSVDYSPGPTLAVAVVAFIFGLV
GAIVTCILRNKATTEQDGPFRACMPNAKAGGAPAAAPPAAAGVATARAVP
QPGAAPAGTKASQYPAVGTV*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig82:526562..536862-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig82.16428.1 ID=mRNA_E-siliculosus-1a_M_contig82.16428.1|Name=mRNA_E-siliculosus-1a_M_contig82.16428.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=10301bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:526562..536862- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CAACCGGCAAACCACCAAGCGGCTCTCCTTCATCAAACAAAATGGTCACC ATGCAGGTGTGTTGGGTGTGTATGGTTCGGCATGGCTGTTCTCGTGTTCA TGGTAGGTGCGCGAAATCGGACCGCGCTGATTGCCCAAGAGATACATCGT CTGCGCGCGTGGTTGCCGACAAGATAGACACAAAGGGGGGAAACAAAAGC CTTAGGCGTTGTAGCCTCGCCACAGCATGCGTGAACAAGAGTGGGGGGCA CAAGCAGTTGGAGCGCTGAGGAAATCGTTCGCCTCCGGATTTGACCTGTC AGTGTCCTTTCGGCACTCACGGACCACGCGCCTCTCGCATGCCGCATATC CCCCTCGATGGCAGATGTCATCTGTTTGTAACCTTTTTGGAGTACAGGCA AACTACCCGCAGCAGGCATACATGTGTCTTGGTGCAACCCAGACACTGCC CTTCTCCACGCGCGCGCGCTAGACCACACCGCAGGACTGCTAGTGTATGC ACAAGGCTGCATAGCTCGCCGACTCTGTTCTCGATTTATATTACATTCTT TGAAGGTTTTCGGCGCGCTTGAAGCTTGGAATAGCGGGTCATCTGTCGAT CCCACGCACACCACAACTCATCCAACCGCTCGTTCTTATCTTTTCAACGT CTCTTGTTGGTGGCCCGTCTTCGCAACACAGCCACCTCCGGCGTACAGCG GCGGTGAGCAGGCGCCGCCATCATACAGCGGCAATCAGGCGCCGCCATCA TATGGCGGCAATCAGGCGCCCCCTGCCTACTCGGGCGAGGGAGGAAAAAG GCAGAACCCCGGGGTGAGCTGCCCATCTGTCCGTTGTGTTCTGCCTGCAT GCAGAAACATAGAAAATAGCTGCTGTTCTTGTATGCATACACCGCCAACC GCCAACAACTTTCGTCGTATGCGTGGGTGGTCACGAGAGCGCTCCTCCTG CGGGGTGCAGCGTCTGTAAGATCTGAGGGAGGTCTTTTCATCATCATCAC CACATCACCACCATCAACTATTAGACCATCTTTCTCAAATCAACAATCAA CAATCCGATCACCGTACAAAAGATAGATAAGTTGTTCTTGGTTCGAAAAC GTGAACTGCTGTATGTAATGGCCAGGGTCAGGGGTTCGAATCCCGGCGAA ATCCCGCAGGTGCCATGGAGGTACTGCCCGCAGACGCCTCGGCATTGGTG GTTTGTGAACTTCGGCGGGCCTGGCGTGTGATCGGGGACAGATGTGAAGC GACTGTCCGCTGCGCAGGGCATGGTGTGCAGCTGTGTGTGTGTGTTTTTA TTATTAGCATCGACCGCGCTAACCGGCTGACCAATGAAAAGACGTCAGTC TTAGTGCGGTTGAAAACACAAAACACTTCTATCTACCATGAACCCCGTGA GGGGGCAGCATGGGGGAGGCTAAACTATCCTTCGGATTAAAAACAGAAAC AGCAGCAACAGACGAAAACTGCACGCGTCTACCAAGGCTATTACCTAGTA CTCGAGTTCGTTTAGGAGTACTTTCACCAGTGTCCTCATTGCTTTTGCTA CCATCATTCTGATCCACGTTTTGACAAGAAGAATCTCTGGGCAGTTCTTC CCTAGCCCTACGGTTCTGTGTGTGTGTGTGTGTTTTTATTATTAGCATCG ACCGCGCTAACCGGCTGACCAATGAAAAGACGTCAGTGGTGGCGGGTAAA AATCAAGGTCCCTGGAAGGGAGCCCAAATTCGAAAAATGCGCAATGCGCT AAATGCGAATGCCAATACGACTCTCTCTACATATTCTTTCACATAGACAC ACATCTCAGCTACACAAATGCCCTTGTCGAAACCTAAGAAGCCACTGATG CAAAGAGCGGAGGACAGCAAAAGGGTTAATTCAAGCTTTGCCGAAGCCAA CATATCGTGGTATGCTGCATCTCCCAATTTGATAATCGTACACTCCCAAG ATCCAACAGTCATCGTGTCAGCAGCTAGATGACTCAAACAAAATAGCAAC ACATACACTGTCATAGCTCCACACATGCCCTCGTTCGAACCTAGGAAGCC ACTGATGCAAAGAGCGGAGAACAGCAAAAGGGTTAATTCAAGCCCAGCCG AAGCCAGGATATCGTGGTATGCTGCATCATCTCCCAATTTGATAATCGTA CACTCCCAAGATCCAACAGTCATCGTGTCAGCAGCTAGATGACTCAAACA AAATAGCAACACATACCCTGTCATAGCTCCACACATGCCCTCGCCCGAAC CCAGGAAGCCACTGATGCAAAGAGCGGAGGACAGCAAAAAAAGGGTTAAT TCAAGCCCAGCCGAAGCCAAGATATCGTGGTATGCTGCATCTCCCAATTT GATAATCGTACACTCCCAAGATCCAACAGTCATCGTGTCAGCAGCTAGAT GACTCAAACAAAATAGCAACACATACACTGTCATAGCTCCACACATGCCC TCGCCCGAACCCAGGAAGCCACTGATGCAAAGAGCGGAGGACAGCAAGAG GGTTAATTCAAGCCCAGCCGAAGCCAGGATATCGTGGTATGCTGCATCAT CTCCCAATTTGATAATCGTACACTCCCAAGATCCAACAGTCATCGTGTCA GCAGCTAGATGACTCAAACAAAATAGCAACATATACACTGTCATAGCTCC ACACATGCCCTCGCCCGAACCTAGGAAGCCACTGATGCAAAGAGCGGAGG ACAGCAAAAGGGTTAATTCAAGCCCAGCCGAAGCCAGGATATCGTGGTAT GCTGCATCTCCCAATTTGATAATCGTACACTCCCAAGATCCAACAGTCAT CGTGTCAGCAGCTAGATGACTCAAACAAAATAACAACACATACACTGTCA TAGCTCCACACATGCCCTCGTCCGAACCTAGGAAGCCACTGATGCAAAGA GCGGAGGACAGCAAAAGGGTTAATTCAAGCCCAGCCGAAGCCAGGATATC GTGGTATGCTGCATCTCCCAATTTGATAATCGTACACTCCCAAGATCCAA CCGTCATCGTGTCAGCAGCTAGATGACTCAAACAAAATAACAACACATAC ACTGTCATAGCTCCACACATGCCCTCGTCCGAACCCAGGAAGCCACTTGG ATTTGTGTGTGTGTGTGTTTTTGTCATTAGCATCGACCGCGCTAACCGGC TGACCAATGAAAGACGTCAGTCTCAGTGCGGTTGGAAACACAAAACACTT CTAAATGCCACTAACTGGGACCCCGTGAGGGGGCGGCATGGGGGAGGCTA AGGTATTCTCTGGATCAAAGACAGAAACAGTAGCAACAGAAGAATGTACC ACGCGTCTACCAAGGCTGCTGCTACCTCGCACTCGTGTGTGTGATATGGC TGTGTCGCGGCCTCCGGAAGCTCGATTCAACAGAAAATCTCAGAATAAGA CAAAATTTCTGTTAAACCGATTTTGGCCGTGCCAAGCCAGTCACCTCTGT TACACCCGTCCTTTCTGCTAAACATCTTATGTTAAACCGTAGCCACTGCT GTACGAAAATACAATGGACCCGAAGGGTCCGGAGTATGGAGTAAAAAATC AACGACAGACAGCAGTCTAGGACACTCCGCTCGCCTCTACACGCTATGCG AGGTGACCTATAGACCGTAGAGACTGGAAAAGAGAAAGAAAAAGAAAAAG AAAAGAAGAGAGCAGATGGGAGGGAAAAGAGAACGAGAAAGACGGAGTAT CCGTGTGATAGAAATTACATTAAAAAAAAAAAACTCCGGACAATGGAAAC GAAAAATATGTCGCCATTGCCATAGGCCATCCTTTCGTCAGACATCAGTC TCAGCAGAGAGAGAACGGCGCGCCCTCCGCTCCTCCGAGCTGTGTGCGGC TGTGGCATAAAGAACTACTTCGTACATGCATACACTCAACCTTGTGCCCT CTACTACTGGAGCGGGCGGGCGCCGGCGTTTGTTTCATTCTCGAGGTAGT ACGAAGTCTTTGCATGTTTCGGTACAATCGAGCAATTGAAGGCCCTGGTG CCTGGCGCCCTGATCTGCAACAATGTTTTGGGTCCTCAAAACTCTTCGAT GCACCCAGAGGGGGACGCACATAAGCCATGCATCATGCGTCATGCACCCG CACGTGGAAGTTTCCCGCCATTTATTGTACAGACATCGAGACCTGCACGA GCACCGTTTACCCCCCAAGAGCGACCTAGGCCTACTCCAAGCACCAACCT AGCACCTACCCAAGCAGTACCAACAAGCCACGTAGATTTATCGCATCAGT GCAAACCTACCGCCTAATCCAAGCAATAACAACCTGCTACGTGTACAGCA GTAGATAGATATTCTCCCATCAACACCAACCTATGGCGCCAATGCCGCAA CCAACCTAGAACTTAGCCACAGCGCCAACCTCGCACCTATTGTTAAAGAC ATAGTATAGTATAGTATCGTATAGTATAGTATAGTATAGTATAGTATAGG CTGGGTTTGGGGTTAGGGTTTAGTTGGAGATTTTAGCCGGTTTCATGCCC CTGCCAAAGCAGGGAAACTTACGTTTTAGAAGTTGTACCCGAAGTGCTCT GATTGATTGTATTGTAAATCAACTGGTGTTTGAAGTGACCAAGAACACCG GGTTGGAGGCGTTACGACCTTTCTTGTTCTTTTCTTTCCTGGGTGGGATA CTTCGGCCTGTGAAAGGGTTTGGATGCATGGCTTTCATGCATGCGTCCCC CTGGGTACATACCTACAATTTGTTCAATGAATTTGTTGGCCTGGTCCGGG CCGAAAAACCAAAAATCGGCAAAATGTATGTCTACTACCAAGTACAAAGA CCAGACAAGTACTTTTAGGATATCTACTACATGTAAGCACAAAGACTCAA GACTACAACTTGTGCGTCACCTCATCAAGGGATGATGACTAAAAACATGT GTAGAATGCTGAAGACGCACTTGTATTCAAGGTCTCGAGTTTTTCATGCT TTGGGAGTGTCCAATAGTTTTCTTCATAATTTTGTCTTTTTTTGTCTACT CTGATCTGGGCACCCAGTAGTCTATACAACACCCCGTTGGTGTACACAGG AGGAGTTGCACCCGATGTTAAGAACCGCTCACAATCTTGGTGAACGCTCA AAATTCTTCTTCGAGCGAAGCGAGATTTCTAATCTTGCCTGAGGAGACAG CGCAATATAGGCTCCATGCAGAAAAAGAGTTTGTAGCAGTTAGTTCGGTT TTAGAGTACACGACTTGATTTTAGACTACACAGGCGTCAGCATCAGATGC ACTTTTTTTTTTTTGGGAACACACAGCAGATTGCAGCAGAGAACACACGC ACAGCGGGCGACGGCATCTGGGCTCGATGCCGCTGGACTCTCTGTGAGGC TACAATATGTTTGCTGTCGCGCTTTTTTTTTTTTTTACCGCCGCTTCAAC TTAGCAATGTGAGCACAGCACCACACTACTTGTTCTCGAAAAATCGTTCA GATCCGGGCGACTTTCTTCCGGTTCCTCGAGTCATAAAAATATAATGATT CAAGTTTATGTGGGTCACAACATGCTACAGTTCACGTTTTCGGCTCGTGT GCGACCAACAAGACACAGAGCGCCCTGTTTTTGGATCGCCTGCAGAGGGC ATGTGTATGATCGCACGCCATTGCCTGCAGTGTGTGGATGTCATCGGGCT TCAAGTAAGACCTCTCTCTGTGCCATAGACTACTGTATGTGTTGTGAACT ACCTCATCACACTCGGAGCAACCAGAACAGAAAGGACAACTTCCAAAAAG TCAACAACCAAACACGCTCGATTCACGTTTGCAGGCCGTGAGCAATCAAA ACTGGGCAACATGCTCTGTTTCTATATAGCGTGGCCCGGATTGTGCTACG TATGTTCCTCGACCCTAGAGCTTACCGTACTTTTTGTTATTTTTCGTGAA AGTCTCAGCCTTGGTTTCTTGAAAGGTCTGTCTAGCTCGATCAATATTTG TTGTTGGATTTTGTGATCCGCCCTTCCTGGTGCTGCTGTGAAATTAGATG GCAGCGACTCGGCTGGTTCTCTGTGCGGCAGCAGCTTCGGTACAAGTAGG GAGCGGGCGGGATGTCGGGTAGCGCTCTCCAACGTCTCCAAAAAAAGCAG CAAGCTCGTTAACACCGTCACTCACGCCCCTTTTTTTTTTTTCGAAGCAC TTTCTTCTTGTGTTTCCCACACCCCGTCAACGATGACACGACGACGTGCA GTACCTACAGGCGCGCAATTGCAGTAGCCTTGGCAAAGGCTATTCGTTGG TTTTAAGATTTGGTTAACATGTTGAAAAAAGTTGCAATTGGGGGGGTTGG AGTTTACGGTTTGGGTCGGCGTACCCCCCGTCCCTATTATTTCCTCATGA ACTTAATTCCTCGCGAATCGATCCCGCAAGTGTCCATCCAATGTTCACAC TACTATTTGTTAAACCAGATGCGAAACGCGGTGGATGTGGATTGTATTCC TTGCTTGGTGTTCGCCTGATGGCAGGCTTACTGGGGCTACTGGATTGTCT TGTTCGTCACCACCATCTTCACTTGGATCTTCGCCGTGGCCGCAGCCGCG GATGACGCTTGGATAGAAGATTTCTCCAAGGCTGGTCTTGGAGACTCATG CGACGGCTACGACTTCTGCGGACTCTGTGAGTACAACAGTACATACCAAC GTGTCGACACATTCGATCATGAACGGAAGGAACCGCACTTACAACCTGGT AGCCTCGTGAAATTGAACCTGGGCACCATTTGTGAGCTCTGTTAAGAACC CCTACACTAAATCCTTTATAGCGGCCATTCGTAGCATGACCCTAGGAATA CGGTGAGAACCCCAGCCTCGCCCGAACCTATAACAATAGAGGTTCTTGAG TGGTGGCGCGTTCTGTACAGCAGCAGTAGCTCGAGGCGTGCATGTGCTGT TGTATTCTGCGCTCTAAGATTAAGGTGTCCAATTTTGATTTTGATGGTTC ACGGAGAGCAAGAAGTCTAACTATTTTCAGTATTACGTACCACGGCAGTA GGATATCGCACAGCACGATCGGACTGATACGATGTCGAGGACTCGTTGTG TGGGGAACATGAATAAGTGGATCTGATGTGACTCGCACAGCTGGTTGCTT GGTGTTCCTGCTGATGGGAGCTGGAAGCAAAGTAGGAATACAGCTCCTCT TGCTCTCACACGAGTTGATTGCTGCCACGCACCAACACAAGACACCGCTG CTCCACCCGATACCCGCAGTGAACTTGCGTATGTAGTTGTACTAGTTACG AAGGTATGGCCAGGATGAAACCAATGCCCACAGCAGCGCTCGGCCCCCTG CCCCGGGTGAACGTGAATGTGAATGTATCCCTTGTCAGGGGCCTGAGTTG GGCGTGTTTGGAGCTGCATTTGTCGCTCCGTAGTTAGTTGTAATTGTGTC GCTCTTGAGTGATACTGTACCATGTAGATGTAGCACGCGTCGGACTGTCT TGTGGGCTGAGCTTGGCACGAAGAGACGAAGAGACACGGCACTACAATAC TGGTGTGTTCGTTGGTGGCAGTGATACGCATACAAGTGTCAGTGTCAACC AGTTTTCCTTGGCAGGGATTGAAAAACAAAGCTTGGGTTGTGTCGTCGCC GACAACGAATCCTAACATAGGCCGAGATCGGCTGCAACCCAACGACAGCG ACGGTATTGGCTGTCTCCCCTGTCCCTGTCCCTGTGGCCCGTCCTTCTTA CTTTCCACTCTGACGCAATCGCAACCTGCCTGAACCTCCTCAGACAAAGC CGCGACGGCATTCCAGTACTTGGCTACGATCGTGATCAGCGTTGTGCTGG TGGCGGTGGTGGTGGCGGCCTTTATGCCAGCTCCCACTACCGGAAAGCTT GGGCTCGCCGTGGGGATCATGCTGTTCGTCTTCGCCTTGTTCGAGCTCAT CGCCTTCTGCACCTATGCTGCCTACATCGAAGAACGTGCGATCATGAACC AGTCCAGTGCAATAATTGTTGCGTTGTGAAGTAGTTGTCAAGTTCCGCGG GGCACAAGGCCGGCAGGCCAATGCCCTTGACGCAGCAAGCAGGCTAATAA TGTTGGACGTACATGGCCTGTCCTGCTCCGAGCAAGCGGAAGAATAACAA TGTCTCCTTCAGCAGTAGCGGATGTAGCGGTACATGGCAGGGATCGAGAA TGCTCGCGTGGACGCTATTGTAGCCCTACAGGCAGTTGCTCGAGCGCTTG AAGCAATGGTAGCAAGCCAGCGACATTTGCCACAGATGACTTAGACTACT CACGTACCAATCCGATCCATCTCGTGTTCGTGAAGGAACGAAGATTGATT TGTCCCCTCCCTGATCCCTCTCGACACGCCTCCCTCCCTCCTGTTGCTCC CTACCGCGGTCGACCCCACCCAGTTGAGGATTCGTCGTATTATGTGTCCT ACTACTCCGGTGTCTACTCCGTGGACTACTCCCCTGGTCCTACCCTTGCC GTGGCCGTCGTTGCTTTCATCTTTGGCTTGGTGGGCGCCATCGTGACCTG CATTCTGCGCAATAAGGCAACGACCGAACAAGACGGTCCTTTCAGGGCGT GCATGCCTAACGCTAAGGCGGGCGGTGCGCCTGCGGCGGCTCCCCCGGCT GCTGCTGGTGTTGCGACTGCGCGTGCGGTCCCCCAACCAGGCGCCGCGCC TGCGGGAACCAAGGCTTCTCAATACCCTGCCGTCGGGACAGTGTAGCTGC TGAAAACCTGCAAAATCTGGGGTCTTCGATAGAACCATGCTGGTATACGG GTCAGCAGTAGCACCAGTGAGGGCCGGAAGGTGGAAGGCATCTTGTCGTG TATTATACTGAAAACGAGAGCATGTGCGCTGCCTTGCTGGCAAATGTGTG AGCCGCATGTATGCCTCAGCCCCCCCCCCCCTCTCGGTGGACAGCATGAG AGCCCTCTCTTTCCGGGACCCTGCATGTATTGTGTGTTTGTGTAGCAGTC GCCGCAGAAACGACGCACTCTTTTTACTTTTTCGTGATGGATGTTTCACA ACGAATCTGCCTTGAGTTGTCCTTCTCGCTGCAACCACAACCCGTTCTTC TCCTGTCAGTATCGTTATTTCGTTATTTACTAGAATACTAATGGGTCAAT ACCTGCGGTGCCGTGTTCCTTGCTGTGATGGTGATGGTGATGGTGATGGG GTGCCTTTCTGCGGCCAAGGGGGCCATCGAATCACCGAATCGCACGGGCG ATATGAACCCCCCCTTCCCCCTGTGTTCTTGTAGTGTATGCATATGAAGG TGCAACATCTAGAGTAGCGCGACTCGTCGTGCTTTGCCGTGCCTCTTGCC TCTTGCTCTTGAAGCGTTTACGCAGTAGCTTGCATTTTGGCCAGCAGCGC TTTGACGATTCGGGCGATAGAGTCCTCTTCGCTGTGCTGTGCTGTGCTGC GCTGTGGCTAGGGCTCACCCACCCAGCCTCCCTCTGTTTTGGGATGGGGC AAATCTTGCGTGTCACTCGTCTGCGTTCTGTTTTTTTTTATGGGCGTTGG AGGCAGGTGTGGGAAAGTGTCTATTATCGTACTTGTAGTATTCATGAAGC AGTTTGTTTTTGCGTCTCACGTTAACCTTCCCCGAGCGAGATTGTTCACG GGTTTTCACGGGTAATGTAAGAGCAAGGCCCAAGTGAAGGAGGAGAATGT AACGTAGCTTTTGGTTCCAATTGGAGGCGGTTGGCTTCCACTTCGGGCAA AACATAAGCGCTTGAAGGGGGACGACATTCATATAGACAACAGCGGATGG GTTGGCCAACATGTAGATACAGCAGGGCATGATATGTTGAACGTGTTTAC GAGTCGGGCGTTTTCTGGCGTGTGTGCCCTACCTACCTGTGGTTTTGATC GTTCCTTTCTTGTCATCCCATGGACGGCGTTCTGTTTAGAAACCGCACGC ACACGGAACATGAGCGCGTTATAGAAGGACTTTCCTTCGGACATTCGGGC AGGAGCGTAGTGTGTTGCCCTTGGAGGCGGGTATTGGTATTTTAACTCAT CACATGTCACACCCCGTAGAACGTTCGAGGCCGCGAAGTTCCCGATAAAG GACCGATAATCCCTCTTTGAAAATCTCAGAAAGTGTCAAGCCGGTCAGTG TTGTTTCAAGGCCAATTGGAATACCAAGATGCGGCGGGGTCGTGCGAGTA CGTACATGTTTAAATCATGTGGCCGCAAAACATAACGGTGACAACACCAC GTGTGTGTGCAACGGACGCGCAAGTGTGAAAGTGTGGTCCAAGCCGAGGC AAATAAATCAACGTGGTGCTTGTCTTGTGGTCCAAGCCGCATCAACCTTA C
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig82:526562..536862-

>mRNA_E-siliculosus-1a_M_contig82.16428.1 ID=mRNA_E-siliculosus-1a_M_contig82.16428.1|Name=mRNA_E-siliculosus-1a_M_contig82.16428.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1626bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:526562..536862- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTCACCATGCAGATGGTCACCATGCAGCCACCTCCGGCGTACAGCGG
CGGTGAGCAGGCGCCGCCATCATACAGCGGCAATCAGGCGCCGCCATCAT
ATGGCGGCAATCAGGCGCCCCCTGCCTACTCGGGCGAGGGAGGAAAAAGG
CAGAACCCCGGGCCACCTCCGGCGTACAGCGGCGGTGAGCAGGCGCCGCC
ATCATACAGCGGCAATCAGGCGCCGCCATCATATGGCGGCAATCAGGCGC
CCCCTGCCTACTCGGGCGAGGGAGGAAAAAGGCAGAACCCCGGGGCTTAC
TGGGGCTACTGGATTGTCTTGTTCGTCACCACCATCTTCACTTGGATCTT
CGCCGTGGCCGCAGCCGCGGATGACGCTTGGATAGAAGATTTCTCCAAGG
CTGGTCTTGGAGACTCATGCGACGGCTACGACTTCTGCGGACTCTGCTTA
CTGGGGCTACTGGATTGTCTTGTTCGTCACCACCATCTTCACTTGGATCT
TCGCCGTGGCCGCAGCCGCGGATGACGCTTGGATAGAAGATTTCTCCAAG
GCTGGTCTTGGAGACTCATGCGACGGCTACGACTTCTGCGGACTCTACAA
AGCCGCGACGGCATTCCAGTACTTGGCTACGATCGTGATCAGCGTTGTGC
TGGTGGCGGTGGTGGTGGCGGCCTTTATGCCAGCTCCCACTACCGGAAAG
CTTGGGCTCGCCGTGGGGATCATGCTGTTCGTCTTCGCCTTGTTCGAGCT
CATCGCCTTCTGCACCTATGCTGCCTACATCGAAGAACACAAAGCCGCGA
CGGCATTCCAGTACTTGGCTACGATCGTGATCAGCGTTGTGCTGGTGGCG
GTGGTGGTGGCGGCCTTTATGCCAGCTCCCACTACCGGAAAGCTTGGGCT
CGCCGTGGGGATCATGCTGTTCGTCTTCGCCTTGTTCGAGCTCATCGCCT
TCTGCACCTATGCTGCCTACATCGAAGAACTTGAGGATTCGTCGTATTAT
GTGTCCTACTACTCCGGTGTCTACTCCGTGGACTACTCCCCTGGTCCTAC
CCTTGCCGTGGCCGTCGTTGCTTTCATCTTTGGCTTGGTGGGCGCCATCG
TGACCTGCATTCTGCGCAATAAGGCAACGACCGAACAAGACGGTCCTTTC
AGGGCGTGCATGCCTAACGCTAAGGCGGGCGGTGCGCCTGCGGCGGCTCC
CCCGGCTGCTGCTGGTGTTGCGACTGCGCGTGCGGTCCCCCAACCAGGCG
CCGCGCCTGCGGGAACCAAGGCTTCTCAATACCCTGCCGTCGGGACAGTG
TAGTTGAGGATTCGTCGTATTATGTGTCCTACTACTCCGGTGTCTACTCC
GTGGACTACTCCCCTGGTCCTACCCTTGCCGTGGCCGTCGTTGCTTTCAT
CTTTGGCTTGGTGGGCGCCATCGTGACCTGCATTCTGCGCAATAAGGCAA
CGACCGAACAAGACGGTCCTTTCAGGGCGTGCATGCCTAACGCTAAGGCG
GGCGGTGCGCCTGCGGCGGCTCCCCCGGCTGCTGCTGGTGTTGCGACTGC
GCGTGCGGTCCCCCAACCAGGCGCCGCGCCTGCGGGAACCAAGGCTTCTC
AATACCCTGCCGTCGGGACAGTGTAG
back to top