mRNA_E-siliculosus-1a_M_contig82.16377.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig82.16377.1 vs. uniprot
Match: A0A6H5L014_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L014_9PHAE) HSP 1 Score: 382 bits (980), Expect = 3.400e-127 Identity = 191/194 (98.45%), Postives = 191/194 (98.45%), Query Frame = 2
Query: 17 MKVSGVVCFMAAAGAANAFVAPSAARLGAVTRGESSLNMAVKKPSKKEEWVPVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPAKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 598
MKVSGVVCFMAAAGAANAFVAPSA RLGAVTRGESSLNMAVKKPSKKEEWV VLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEP KDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY
Sbjct: 1 MKVSGVVCFMAAAGAANAFVAPSATRLGAVTRGESSLNMAVKKPSKKEEWVSVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPPKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 194
BLAST of mRNA_E-siliculosus-1a_M_contig82.16377.1 vs. uniprot
Match: A0A836CB65_9STRA (Ferredoxin component n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB65_9STRA) HSP 1 Score: 280 bits (716), Expect = 1.460e-87 Identity = 141/192 (73.44%), Postives = 158/192 (82.29%), Query Frame = 2
Query: 23 VSGVVCFMAAAGAANAFVAPSAARLGAVTRGESSLNMAVKKPSKKEEWVPVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPAKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 598
VS AA A AFVAP+ RL V R SS+ M K P+K EEWV VL+TS+IAPGELV V DG +LLIAADL GSIYATANICPHLGTPLDQGSINA GALVCPLHKSAFSLE G+LVGDWCPFPP+LGPLVLG+LEP K+LAVFPVRA G NI+VL+NRNLK +FE+KYW+G+LDAQGKA+GDYY
Sbjct: 8 VSTAAVVALAASGAEAFVAPAGGRLAGV-RSSSSMRMMAKVPAK-EEWVSVLQTSEIAPGELVPVETDGLQLLIAADLDGSIYATANICPHLGTPLDQGSINAQGALVCPLHKSAFSLETGELVGDWCPFPPILGPLVLGKLEPPKNLAVFPVRAKGSNIEVLVNRNLKADFETKYWSGILDAQGKATGDYY 197
BLAST of mRNA_E-siliculosus-1a_M_contig82.16377.1 vs. uniprot
Match: A0A6V1TRG8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TRG8_HETAK) HSP 1 Score: 254 bits (649), Expect = 1.150e-77 Identity = 128/189 (67.72%), Postives = 146/189 (77.25%), Query Frame = 2
Query: 32 VVCFMAAAGAANAFVAPSAARLGAVTRGESSLNMAVKKPSKKEEWVPVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPAKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 598
VVC +A G A AFV S + + SSL M + K KEEWVPVLKT +IAPGELV V DG +LLI AD GSIYA+ANICPHLGTPLDQGS+ G +VCPLHKSAFSLE G+L GDWCPFPP+LGPLVLG+LEP K+LAV PVRA G +I+VL+NRNLK FESKYW GLLDA+GKA+GDYY
Sbjct: 7 VVCVIALIGLAKAFVPASNGLARSAVKSTSSLQM-MAKVGAKEEWVPVLKTDEIAPGELVPVETDGLQLLIIADFDGSIYASANICPHLGTPLDQGSLGD-GTIVCPLHKSAFSLETGELAGDWCPFPPILGPLVLGKLEPPKNLAVVPVRAKGNSIEVLVNRNLKSMFESKYWAGLLDAKGKATGDYY 193
BLAST of mRNA_E-siliculosus-1a_M_contig82.16377.1 vs. uniprot
Match: A0A7S2V0A4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0A4_9STRA) HSP 1 Score: 248 bits (633), Expect = 2.860e-75 Identity = 130/196 (66.33%), Postives = 148/196 (75.51%), Query Frame = 2
Query: 17 MKVSGVVCFMAAAGAANAFV-APSAARLGAVTRGESSLNMA-VKKPSKKEEWVPVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPAKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 598
MK VV AAG NAF+ AP A AV S L M V KEEW+PVLK S+IA GELV V QDG +LL+ AD GSIY TANICPHLGTP+DQGS+ G +VCPLHKSAFSLE G+L GDWCPFPP+LGPLVLG+LEPAK+LA F VRA G +I+VL+NRNLKQ+FESKYW G+LDAQGKA+GDYY
Sbjct: 2 MKTFVVVLLCIAAGV-NAFLPAPGMAGSSAVRATSSQLKMGGVPFAPTKEEWIPVLKKSEIAAGELVPVEQDGLQLLVIADFDGSIYCTANICPHLGTPMDQGSLGD-GTIVCPLHKSAFSLETGELAGDWCPFPPLLGPLVLGKLEPAKNLATFAVRAKGDSIEVLVNRNLKQQFESKYWAGILDAQGKATGDYY 195
BLAST of mRNA_E-siliculosus-1a_M_contig82.16377.1 vs. uniprot
Match: A0A6U4IM54_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4IM54_9STRA) HSP 1 Score: 237 bits (605), Expect = 5.820e-71 Identity = 122/197 (61.93%), Postives = 149/197 (75.63%), Query Frame = 2
Query: 17 MKVSGVVCFMAAAGAANAFVA---PSAARLGAVTRGESSLNMAVKKPSKKEEWVPVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPAKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 598
M + V+ + AA + AFVA PSAAR TR S+LNM +K E WV VLKTS+I GELV V DG LLIAAD G+IY AN+CPHLGTPLDQG++ A G +VCPLHK+AFSL+ G++VGDWCPFPP+LGP+VLG+LEPAK++A FPVR+SG NIQV +N+N + EFES YW G+LDAQGKA+GDYY
Sbjct: 16 MMMKFVLAALLAAVPSMAFVAKAGPSAAR---ATRASSALNMMAGARAKME-WVTVLKTSNIGKGELVPVETDGMNLLIAADTNGAIYCLANVCPHLGTPLDQGTV-ANGVIVCPLHKTAFSLKSGEVVGDWCPFPPILGPMVLGKLEPAKNVATFPVRSSGSNIQVQVNKNARAEFESGYWAGILDAQGKATGDYY 207
BLAST of mRNA_E-siliculosus-1a_M_contig82.16377.1 vs. uniprot
Match: A0A6U4JWG8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JWG8_9STRA) HSP 1 Score: 235 bits (599), Expect = 5.990e-70 Identity = 114/173 (65.90%), Postives = 137/173 (79.19%), Query Frame = 2
Query: 80 PSAARLGAVTRGESSLNMAVKKPSKKEEWVPVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPAKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 598
PSAAR TR S+LNM +K E WV VLKTS+I GELV V DG LLIAAD G+IY AN+CPHLGTPLDQG++ A G +VCPLHK+AFSL+ G++VGDWCPFPP+LGP+VLG+LEPAK++A FPVR+SG NIQV +N+N + EFES YW G+LDAQGKA+GDYY
Sbjct: 49 PSAAR---ATRASSALNMMAGARAKME-WVTVLKTSNIGKGELVPVETDGMNLLIAADTNGAIYCLANVCPHLGTPLDQGTV-ANGVIVCPLHKTAFSLKSGEVVGDWCPFPPILGPMVLGKLEPAKNVATFPVRSSGSNIQVQVNKNARAEFESGYWAGILDAQGKATGDYY 216
BLAST of mRNA_E-siliculosus-1a_M_contig82.16377.1 vs. uniprot
Match: A0A4D9CV78_9STRA (Rieske domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV78_9STRA) HSP 1 Score: 229 bits (583), Expect = 7.010e-68 Identity = 114/197 (57.87%), Postives = 144/197 (73.10%), Query Frame = 2
Query: 17 MKVSGVVCFMAAAGAANA-FVAPSAARLGAVTRGESSLN--MAVKKPSKKEEWVPVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPAKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 598
MKV+ ++ + A A F A R+ V G+ + + + VK K+EWV +LK +DIAPG+++ V G +LL+ AD GS+Y ANICPHLGTPLDQGS+ G +VCPLHKSAFSLE G+LVGDWCPFPPVLGPLVLG+L+P +DLAVF VR+ G +I+ L+N NLK +FESKYW GLLDAQGKA+GDYY
Sbjct: 1 MKVAAILLALCATTQAFVPFAAKPTPRVAPVAAGKQNPDGSIRVKGVKAKDEWVSLLKATDIAPGDIIPVESKGLQLLLVADYDGSVYCVANICPHLGTPLDQGSLGD-GTIVCPLHKSAFSLETGELVGDWCPFPPVLGPLVLGKLQPPRDLAVFQVRSRGSDIEALVNVNLKADFESKYWAGLLDAQGKATGDYY 196
BLAST of mRNA_E-siliculosus-1a_M_contig82.16377.1 vs. uniprot
Match: A0A7S0XBI6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XBI6_9STRA) HSP 1 Score: 223 bits (569), Expect = 6.780e-66 Identity = 101/166 (60.84%), Postives = 127/166 (76.51%), Query Frame = 2
Query: 101 AVTRGESSLNMAVKKPSKKEEWVPVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPAKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 598
A++ G + + +K SKKEEWVPVLK+SDIA G+LV V DG +LI ADL G I+A N CPHLGTPL+ G + +VCPLHKSAFSLE G +VGDWCPFPP+LGPLVLG+L P + + FPVRA G ++V ++R+LK+ FESKYW+GLLDAQGKA+G+YY
Sbjct: 26 AISSGRLNSQLQMKVISKKEEWVPVLKSSDIAAGDLVPVEVDGVAILIVADLDGKIFAIGNSCPHLGTPLENGRLGEGSTIVCPLHKSAFSLESGDVVGDWCPFPPILGPLVLGKLAPPEKVVTFPVRAKGQTVEVFVDRSLKERFESKYWSGLLDAQGKATGEYY 191
BLAST of mRNA_E-siliculosus-1a_M_contig82.16377.1 vs. uniprot
Match: A0A0G4ER02_VITBC (Rieske domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ER02_VITBC) HSP 1 Score: 185 bits (469), Expect = 6.480e-51 Identity = 84/152 (55.26%), Postives = 109/152 (71.71%), Query Frame = 2
Query: 143 KPSKKEEWVPVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPAKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 598
K + +EW VL +IA G+LV V +G LL+ AD GSIY AN+CPH+GTPL+QG + G ++CPLH++AFSLE G++VG+WCPFPP++GPL G+L P ++LA FPVR G I+VL++ N K FE YW GLLDAQGKA G YY
Sbjct: 73 KTTTAQEWKAVLNDDEIAAGDLVPVQVNGLNLLLVADTDGSIYCVANVCPHIGTPLEQGEVKD-GKVICPLHRTAFSLEKGEVVGEWCPFPPLVGPLT-GKLRPPQNLATFPVRQRGRTIEVLVDSNTKANFEKNYWKGLLDAQGKADGSYY 222
BLAST of mRNA_E-siliculosus-1a_M_contig82.16377.1 vs. uniprot
Match: A0A0G4F0C4_VITBC (Rieske domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F0C4_VITBC) HSP 1 Score: 184 bits (468), Expect = 9.020e-51 Identity = 84/147 (57.14%), Postives = 107/147 (72.79%), Query Frame = 2
Query: 158 EEWVPVLKTSDIAPGELVGVTQDGQELLIAADLKGSIYATANICPHLGTPLDQGSINAAGALVCPLHKSAFSLEDGKLVGDWCPFPPVLGPLVLGRLEPAKDLAVFPVRASGGNIQVLINRNLKQEFESKYWTGLLDAQGKASGDYY 598
+EW VL +IA G+LV V +G LL+ AD GSIY AN+CPH+GTPL+QG + G +VCPLH++AFSLE G++VGDWCPFPP++GPL G+L P ++LA FPVR G I+VL++ + K FE YW GLLDAQGKA G YY
Sbjct: 78 QEWKAVLNDDEIAAGDLVPVQVNGLNLLLVADADGSIYCVANVCPHIGTPLEQGEVKD-GKVVCPLHRTAFSLESGEVVGDWCPFPPLVGPLT-GKLRPPQNLATFPVRQRGRTIEVLVDSSAKANFEKNYWKGLLDAQGKADGSYY 222 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig82.16377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig82.16377.1 >prot_E-siliculosus-1a_M_contig82.16377.1 ID=prot_E-siliculosus-1a_M_contig82.16377.1|Name=mRNA_E-siliculosus-1a_M_contig82.16377.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=195bp MKVSGVVCFMAAAGAANAFVAPSAARLGAVTRGESSLNMAVKKPSKKEEWback to top mRNA from alignment at E-siliculosus-1a_M_contig82:146053..155537- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig82.16377.1 ID=mRNA_E-siliculosus-1a_M_contig82.16377.1|Name=mRNA_E-siliculosus-1a_M_contig82.16377.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=9485bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:146053..155537- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig82:146053..155537- >mRNA_E-siliculosus-1a_M_contig82.16377.1 ID=mRNA_E-siliculosus-1a_M_contig82.16377.1|Name=mRNA_E-siliculosus-1a_M_contig82.16377.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1170bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig82:146053..155537- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |