mRNA_E-siliculosus-1a_M_contig80.16256.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig80.16256.1
Unique NamemRNA_E-siliculosus-1a_M_contig80.16256.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16256.1 vs. uniprot
Match: A0A6H5JQ82_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ82_9PHAE)

HSP 1 Score: 506 bits (1302), Expect = 3.390e-174
Identity = 271/279 (97.13%), Postives = 274/279 (98.21%), Query Frame = 1 
Query:  238 MGPPPFVASDDPCAGADRAGGTEPPCNVSVSMYVREVVSGVCAVFEEAPAVGLVCKTLLSLERLVFTAKGNRKELAVLLELCDVVTRGALNQWAMASADVPGVSEGAAALRRHVEGAKRVAAMCNKGKIARFALGRKISRSIVSVKTNVVNFATVHNLSLSAGLHVKLANMEKELAAKERERQQALDAAAKKASADAALGSQYRVVGLVKRLGSSASERALSVLDWCDYQRQSSSSMVKACGKRFRSGRPELYLMGGVLLATAAAAACGQHGLLKRRPS 1074
            M PPPFVASDDPCAGADRAGGTEPP NVSVSMYVRE+VSG CAVFEEAPAVGLVCKTLLSLERLVFTAKGNRKELAVLLELCDVVTRGALNQW MASAD PGVSEGAAALRRHVEGAKRVAAMCNKGKIARFALGRKISRSIVSVKTNVVNFATVHNLSLSAGLHVKLA+MEKELAAKERERQQALDAAAKKASADAALGSQYRVVGLVKRLGSSASERALSVLDWCD+QRQSSSSMVKACGKRFRSGRPELYLMGGVLLATAAAAACGQHGLLKRRPS
Sbjct:    1 MEPPPFVASDDPCAGADRAGGTEPPRNVSVSMYVREIVSGACAVFEEAPAVGLVCKTLLSLERLVFTAKGNRKELAVLLELCDVVTRGALNQWVMASADGPGVSEGAAALRRHVEGAKRVAAMCNKGKIARFALGRKISRSIVSVKTNVVNFATVHNLSLSAGLHVKLADMEKELAAKERERQQALDAAAKKASADAALGSQYRVVGLVKRLGSSASERALSVLDWCDFQRQSSSSMVKACGKRFRSGRPELYLMGGVLLATAAAAACGQHGLLKRRPS 279
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig80.16256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQ82_9PHAE3.390e-17497.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig80contigE-siliculosus-1a_M_contig80:380316..384015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size840
Model size1971
Exons3
Ec32 orthologEc-08_000600.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig80.16256.1prot_E-siliculosus-1a_M_contig80.16256.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig80 381210..383778 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936214.335017-UTR-E-siliculosus-1a_M_contig80:380315..3812091622936214.335017-UTR-E-siliculosus-1a_M_contig80:380315..381209Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 380316..381209 -
1696250980.052706-UTR-E-siliculosus-1a_M_contig80:380315..3812091696250980.052706-UTR-E-siliculosus-1a_M_contig80:380315..381209Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 380316..381209 -
1622936214.4027088-UTR-E-siliculosus-1a_M_contig80:383778..3840151622936214.4027088-UTR-E-siliculosus-1a_M_contig80:383778..384015Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 383779..384015 -
1696250980.0890794-UTR-E-siliculosus-1a_M_contig80:383778..3840151696250980.0890794-UTR-E-siliculosus-1a_M_contig80:383778..384015Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 383779..384015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936214.3549886-CDS-E-siliculosus-1a_M_contig80:381209..3814431622936214.3549886-CDS-E-siliculosus-1a_M_contig80:381209..381443Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 381210..381443 -
1696250980.0625935-CDS-E-siliculosus-1a_M_contig80:381209..3814431696250980.0625935-CDS-E-siliculosus-1a_M_contig80:381209..381443Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 381210..381443 -
1622936214.370604-CDS-E-siliculosus-1a_M_contig80:382530..3826411622936214.370604-CDS-E-siliculosus-1a_M_contig80:382530..382641Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 382531..382641 -
1696250980.071091-CDS-E-siliculosus-1a_M_contig80:382530..3826411696250980.071091-CDS-E-siliculosus-1a_M_contig80:382530..382641Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 382531..382641 -
1622936214.3870277-CDS-E-siliculosus-1a_M_contig80:383283..3837781622936214.3870277-CDS-E-siliculosus-1a_M_contig80:383283..383778Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 383284..383778 -
1696250980.079961-CDS-E-siliculosus-1a_M_contig80:383283..3837781696250980.079961-CDS-E-siliculosus-1a_M_contig80:383283..383778Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 383284..383778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig80.16256.1

>prot_E-siliculosus-1a_M_contig80.16256.1 ID=prot_E-siliculosus-1a_M_contig80.16256.1|Name=mRNA_E-siliculosus-1a_M_contig80.16256.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=280bp
MGPPPFVASDDPCAGADRAGGTEPPCNVSVSMYVREVVSGVCAVFEEAPA
VGLVCKTLLSLERLVFTAKGNRKELAVLLELCDVVTRGALNQWAMASADV
PGVSEGAAALRRHVEGAKRVAAMCNKGKIARFALGRKISRSIVSVKTNVV
NFATVHNLSLSAGLHVKLANMEKELAAKERERQQALDAAAKKASADAALG
SQYRVVGLVKRLGSSASERALSVLDWCDYQRQSSSSMVKACGKRFRSGRP
ELYLMGGVLLATAAAAACGQHGLLKRRPS*
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mRNA from alignment at E-siliculosus-1a_M_contig80:380316..384015-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig80.16256.1 ID=mRNA_E-siliculosus-1a_M_contig80.16256.1|Name=mRNA_E-siliculosus-1a_M_contig80.16256.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3700bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:380316..384015- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACTCACACCCTCCTCCCCCACCCCTCCCCCTTATCGAATCCTCTTCTCGT
GTATCCAACACCCACCGGCTCCCTGAAGGACGGCTCTAACCCGACGTTCC
TCAGCCCCAAGTCCCGTACAAGGTCGAAGTCGACCGTGCTATCGAAAAGC
TCTAAGCGATACTCAACTGCCCGACACATACTATTCCAGGTTTTTTGGGG
TACTCCTCCTGACGGCGACAACAGCAGGACGAGAGAGATGGGACCTCCCC
CTTTCGTAGCGTCGGACGACCCCTGTGCTGGTGCCGACCGTGCAGGTGGC
ACGGAACCTCCCTGCAATGTCAGCGTCTCGATGTACGTCCGCGAGGTAGT
GTCCGGAGTGTGCGCTGTCTTCGAAGAGGCGCCAGCGGTCGGCCTTGTCT
GCAAGACCCTGCTCTCTCTGGAGAGGCTCGTGTTCACAGCCAAGGGCAAC
CGCAAAGAACTGGCCGTGCTGCTCGAGCTGTGCGACGTGGTCACCAGGGG
CGCTCTCAACCAGTGGGCGATGGCCTCCGCCGACGTCCCAGGCGTTTCGG
AAGGCGCGGCGGCGCTGCGGAGGCACGTGGAGGGCGCCAAGAGGGTGGCT
GCGATGTGCAACAAGGGCAAGATCGCGAGGTTCGCTCTGGGTAGAAAGAT
ATCCCGGTCGATCGTGTCCGTCAAGACCAACGTCGTCAACTTCGCCACCG
TCCACAACCTGTCGCTCAGCGCAGGCCTTCATGTGAGAGCAGGGCAATGT
AGTATACGTGCATGCGCGTGTGTATTTGTTACAGGAGAGGCGAGACGAGC
TAAGACTTTACGTATACGTACAGCCATGAGGAACGAGGAACAGGCTTCTT
TTCCACATGCAGTTCTGGAACGTAACGGAGATTTCGTAGAACATGATGAT
CTGTCGTTGTGTTTTTCCTTTTCTTGTGTGTCAACGGCATTTCGTTTTTC
CCCAGTCAAAAAAACATGCCACGTGTAGTCTTCCGCTGTACCTTGTATGC
TATACAGAAGTTTCTGCTGCTGTGTGAGGTTGTTGTTGCGCCCACTCCTC
GGCGAACGCCGCTGACAAGGCCCTTTGATTCGCTGCCTGACGAGCATCGG
CCGTTCTTTTCTGCCCCATGCTGAATGGCATTATTATAGCTACACAATCG
CAGTTTGAAGTATGAAGCGAGCCGTATGCATATTCATGAGATCCTGAGCG
AGTCAGGAGGGCGCGCATGTATTTATACATCAGTGTTATCGAAAGAGATA
CGAGGGTGTACATATATTTTATGTTGTAGTCTAGTGCTACCGGAGGCGAG
ATAGAGATCGAACAACCAGCCGTTCATATCCTGCATGCTGCTGTGTTGCT
TACTTTCGGCCGAAAATCCATCAGGTCAAACTCGCAAACATGGAGAAGGA
GTTAGCCGCCAAGGAGAGAGAGAGGCAGCAGGCCTTGGATGCGGCCGCAA
AAAAGGCTTCTGCTGATGCCGCCTTGGGTAGCCAGGTAAGCGTCGGGCCG
GTTGTGCGTCGAAAGACTAAGAAGGCAAGAGACTGATTGAGTGCGTTGAG
GCCAGAGAAGGAGGCAAGATACCTCTTGTCTTGAGAAAACGGAGAACGCA
TGAACGCATAGCACGGGGGGGTATCAAGAGCGGAAGATGTTTCGCATTGG
TTCGGGTTGTGGCCGAACACCGTTCGAGCTCCACTTCGTTGTTAATTCTC
ATCACGTAACGTTATTTTTTTGTTGTGCTCGTCCTCCCTCGATGTATGTG
CGTTCGTTCGCGCGCTCGCTGCTGGCCTGTGGTAATCGCTCGTTGCCTTT
CTCTTGTTCTTGCTATCGTTGGGCTAGAAGAGCGTTATTTTCTTTGTTTT
CGTGATTCCCACTCCATGCACATGAAAAATATATCATCCTCTCACACGAA
GCGCAGCATTCAGTCAGTCACACAGTCAGTCACACGAGAGAGACCACATC
GGCACTGCTGTTCTTGGACCTGTTGCACACAGAGAGCTGCACCGCCTGTG
TTGTACGAGGATCAGTAGCAATACCTCCGGGTGTCGGGTCCCTACTGAAA
TAACCGCCTGCTAGCCTTCCCATTATTTTTCTTCCATGAGTGAAGGGTAT
GGGGCGGCTTAACAAGGCCTACGAATAGAGCAAAAACTCCTTTCGAGCAG
GGGGGTGAGAACCCTGCCAGCCTAAACCTACTCCAGCCGTTCTCCCCTGT
TGCTACGGTTGCGAGGGACACAGAACGTACGTTTTCACTACTCTTTCTTC
TAGTCTGGTCGATACACAGCAATCGAAGGCCCGGTTGGCTTTGCTGGCCT
CGCCTAGACCGATATTTTTCCCCACCTTTGTGCGCAAGGTTTCTCGTTAC
CATCCCCTACGCTTCTTCATAGAGTCCTTGGAAACTATATAACTGACGTG
CACAGCACAGCCCTCCCTCATCCCCCACTTGCTAGAGGGAGCTGGAGCGA
GGTAGAAAAAGAAGAGAGGACACAATGCGCTCTTCACACCTCAACGACCC
CGCCCGTGTTTCCGCCCGATCCCAACATTCTCCCCACAACAATCGTTCGC
TGAACCAAAAAAATATCGGCAGTACCGAGTCGTGGGCTTAGTGAAGAGGC
TGGGATCGTCGGCTTCCGAGCGAGCCCTGAGCGTGCTGGACTGGTGCGAC
TACCAGCGACAATCGTCCTCTTCCATGGTCAAGGCCTGCGGCAAGCGCTT
CCGCAGCGGTAGGCCGGAGCTGTATCTGATGGGCGGCGTGCTCCTGGCGA
CGGCGGCGGCGGCGGCTTGCGGGCAACACGGCCTCCTCAAGAGGCGACCG
TCATGATTGAAAGATCAATGATAGCATAGTACTCCTAATAGTGATGACTT
CGAGTGTGAGCTGTTCGGGCTTGGGAGACGGCAGCTGGCAGCTGATTCGC
ACCAACACGTGCTTTACTTTCATCTTGCATCGCGCCTTGATGACAAGACT
GCTTTGCTTTGTTGAGCCCCCTCCGGAGGCGCTCATTGTAAAATAGTTAT
CACGTTTGCGTTGGATTTTGGAGCCCAAGCTACAGTATGTAGTCCATGCA
GCTGGTCCGCCCTCGGGTGGACGAATGGGGAAAGAAACAGCCCGTCTTAC
GCTATTTTGCTAGATTACGTTGGTATGTTGATCGTGATGTTTTGTCGAAA
CACGAGGGTGTTATAGATGTTCATGAAATAGGTAGAGTTTTTTGCAGGTA
TGCGTTGAACCGTTCTGTGAGTGTGTGTCGGTGATTATTTGCTGTTTACT
GTTGAGATATCTCATCATGTGCGCAATTTTTATCTGTGTCTTGTGTTCGT
TGGCCACGCTTGCGCACCAGGCCGTAGCAGGCGGGGATATCGATCCAAAA
ACAATCGAGAAACGTTTTCCATGAATCCATGAAGAAGTGAGGGTTCCTTC
ATGTCTTTTGCATGTGAGAATTACATTGTCTTGCATGCAAGAATGAAGTG
GTTGAAAAACGCACGCACGCTCCCAAATTCGTGTCTTACTCAGAAGGGTA
TGCAAGCCCCTGGTCCTCACGCGGTGTTTGAGAAACAGCAAATAAGTACA
GTGGGACATAGGCGAAAGAAAGTGTTTTGGAAAGGATATGGGCGGTGTTG
TCGTACGTGGGGCTCGCGAAATCGTTCTCCTGAAAGAAACACCTTTCATG
TACGGATGGATGTATATGCGTCGTGGAGTCACCGAAAAAATGGCTGAAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig80:380316..384015-

>mRNA_E-siliculosus-1a_M_contig80.16256.1 ID=mRNA_E-siliculosus-1a_M_contig80.16256.1|Name=mRNA_E-siliculosus-1a_M_contig80.16256.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1680bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:380316..384015- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGGACCTCCCCCTTTCGTAGCGTCGGACGACCCCTGTGCTGGTGCCGA
CCGTGCAGGTGGCACGGAACCTCCCTGCAATGTCAGCGTCTCGATGTACG
TCCGCGAGGTAGTGTCCGGAGTGTGCGCTGTCTTCGAAGAGGCGCCAGCG
GTCGGCCTTGTCTGCAAGACCCTGCTCTCTCTGGAGAGGCTCGTGTTCAC
AGCCAAGGGCAACCGCAAAGAACTGGCCGTGCTGCTCGAGCTGTGCGACG
TGGTCACCAGGGGCGCTCTCAACCAGTGGGCGATGGCCTCCGCCGACGTC
CCAGGCGTTTCGGAAGGCGCGGCGGCGCTGCGGAGGCACGTGGAGGGCGC
CAAGAGGGTGGCTGCGATGTGCAACAAGGGCAAGATCGCGAGGTTCGCTC
TGGGTAGAAAGATATCCCGGTCGATCGTGTCCGTCAAGACCAACGTCGTC
AACTTCGCCACCGTCCACAACCTGTCGCTCAGCGCAGGCCTTCATATGGG
ACCTCCCCCTTTCGTAGCGTCGGACGACCCCTGTGCTGGTGCCGACCGTG
CAGGTGGCACGGAACCTCCCTGCAATGTCAGCGTCTCGATGTACGTCCGC
GAGGTAGTGTCCGGAGTGTGCGCTGTCTTCGAAGAGGCGCCAGCGGTCGG
CCTTGTCTGCAAGACCCTGCTCTCTCTGGAGAGGCTCGTGTTCACAGCCA
AGGGCAACCGCAAAGAACTGGCCGTGCTGCTCGAGCTGTGCGACGTGGTC
ACCAGGGGCGCTCTCAACCAGTGGGCGATGGCCTCCGCCGACGTCCCAGG
CGTTTCGGAAGGCGCGGCGGCGCTGCGGAGGCACGTGGAGGGCGCCAAGA
GGGTGGCTGCGATGTGCAACAAGGGCAAGATCGCGAGGTTCGCTCTGGGT
AGAAAGATATCCCGGTCGATCGTGTCCGTCAAGACCAACGTCGTCAACTT
CGCCACCGTCCACAACCTGTCGCTCAGCGCAGGCCTTCATGTCAAACTCG
CAAACATGGAGAAGGAGTTAGCCGCCAAGGAGAGAGAGAGGCAGCAGGCC
TTGGATGCGGCCGCAAAAAAGGCTTCTGCTGATGCCGCCTTGGGTAGCCA
GGTCAAACTCGCAAACATGGAGAAGGAGTTAGCCGCCAAGGAGAGAGAGA
GGCAGCAGGCCTTGGATGCGGCCGCAAAAAAGGCTTCTGCTGATGCCGCC
TTGGGTAGCCAGTACCGAGTCGTGGGCTTAGTGAAGAGGCTGGGATCGTC
GGCTTCCGAGCGAGCCCTGAGCGTGCTGGACTGGTGCGACTACCAGCGAC
AATCGTCCTCTTCCATGGTCAAGGCCTGCGGCAAGCGCTTCCGCAGCGGT
AGGCCGGAGCTGTATCTGATGGGCGGCGTGCTCCTGGCGACGGCGGCGGC
GGCGGCTTGCGGGCAACACGGCCTCCTCAAGAGGCGACCGTCATGATACC
GAGTCGTGGGCTTAGTGAAGAGGCTGGGATCGTCGGCTTCCGAGCGAGCC
CTGAGCGTGCTGGACTGGTGCGACTACCAGCGACAATCGTCCTCTTCCAT
GGTCAAGGCCTGCGGCAAGCGCTTCCGCAGCGGTAGGCCGGAGCTGTATC
TGATGGGCGGCGTGCTCCTGGCGACGGCGGCGGCGGCGGCTTGCGGGCAA
CACGGCCTCCTCAAGAGGCGACCGTCATGA
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