mRNA_E-siliculosus-1a_M_contig80.16249.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig80.16249.1
Unique NamemRNA_E-siliculosus-1a_M_contig80.16249.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16249.1 vs. uniprot
Match: A0A6H5JND2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND2_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 3.330e-27
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 2 
Query:   80 AICPSRVIKLESLPERNESSSQSQDKQSPLLLVTKPRERLETAPMSPPLSSTRSRSGTGCFFTDE 274
            AICPSRVIKLESLPE NES+SQSQDKQSPLLLVTKPRERLETAP+SPPLSSTRSRSGTGCFFTDE
Sbjct:   94 AICPSRVIKLESLPECNESTSQSQDKQSPLLLVTKPRERLETAPLSPPLSSTRSRSGTGCFFTDE 158
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BLAST of mRNA_E-siliculosus-1a_M_contig80.16249.1 vs. uniprot
Match: D7FP66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP66_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.310e-18
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 2 
Query:  212 MSPPLSSTRSRSGTGCFFTDEFEGNVRHKSARQQCLSISDLDMALL 349
            MSPPLSSTRSRSGTGCFFTDEFE + RHKSARQQCLSISDLDMALL
Sbjct:    1 MSPPLSSTRSRSGTGCFFTDEFEASARHKSARQQCLSISDLDMALL 46
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig80.16249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JND2_9PHAE3.330e-2795.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP66_ECTSI1.310e-1893.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig80contigE-siliculosus-1a_M_contig80:326454..329856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size141
Model size2701
Exons2
Ec32 orthologEc-08_000670.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig80.16249.1prot_E-siliculosus-1a_M_contig80.16249.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig80 328803..329645 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936210.1996014-UTR-E-siliculosus-1a_M_contig80:326453..3288021622936210.1996014-UTR-E-siliculosus-1a_M_contig80:326453..328802Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 326454..328802 -
1696250979.2948627-UTR-E-siliculosus-1a_M_contig80:326453..3288021696250979.2948627-UTR-E-siliculosus-1a_M_contig80:326453..328802Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 326454..328802 -
1622936210.2429328-UTR-E-siliculosus-1a_M_contig80:329645..3298561622936210.2429328-UTR-E-siliculosus-1a_M_contig80:329645..329856Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 329646..329856 -
1696250979.3369641-UTR-E-siliculosus-1a_M_contig80:329645..3298561696250979.3369641-UTR-E-siliculosus-1a_M_contig80:329645..329856Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig80 329646..329856 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936210.2151787-CDS-E-siliculosus-1a_M_contig80:328802..3288811622936210.2151787-CDS-E-siliculosus-1a_M_contig80:328802..328881Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 328803..328881 -
1696250979.3043652-CDS-E-siliculosus-1a_M_contig80:328802..3288811696250979.3043652-CDS-E-siliculosus-1a_M_contig80:328802..328881Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 328803..328881 -
1622936210.2290418-CDS-E-siliculosus-1a_M_contig80:329583..3296451622936210.2290418-CDS-E-siliculosus-1a_M_contig80:329583..329645Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 329584..329645 -
1696250979.3146193-CDS-E-siliculosus-1a_M_contig80:329583..3296451696250979.3146193-CDS-E-siliculosus-1a_M_contig80:329583..329645Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig80 329584..329645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig80.16249.1

>prot_E-siliculosus-1a_M_contig80.16249.1 ID=prot_E-siliculosus-1a_M_contig80.16249.1|Name=mRNA_E-siliculosus-1a_M_contig80.16249.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=47bp
MSPPLSSTRSRSGTGCFFTDEFEGNVRHKSARQQCLSISDLDMALL*
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mRNA from alignment at E-siliculosus-1a_M_contig80:326454..329856-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig80.16249.1 ID=mRNA_E-siliculosus-1a_M_contig80.16249.1|Name=mRNA_E-siliculosus-1a_M_contig80.16249.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3403bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:326454..329856- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGAGGCGGCGGGCATCAGCCTTGCTGTCGCACCACCAGCAGCGACGTGCG
TGTCGACGCAGGCGCCCTCGAAGTCTGCTGCCATCTGCCCGTCCCGCGTG
ATCAAGCTCGAGTCGCTGCCCGAGCGCAACGAGAGTTCTTCGCAATCGCA
GGACAAGCAATCGCCTCTCCTGCTGGTGACCAAACCCCGAGAGCGATTGG
AGACCGCGCCCATGTCGCCCCCGCTATCGTCCACCCGCTCGCGGTCGGGA
ACTGGCTGCTTCTTCACGGACGAGTGAGTAGGCGTCTGTTTTTGCTGCAA
GGTACGGGTGCGTTCTCGCGGGGAAGCCGGCCTTGATCTGCTTGTTGTCG
TTGCTGCTGAAAAGTTTCCGTGGTGCGCGTTGATTGTGATATGAAAAAAA
AAAATGCTTGCTGCTTGCTGTCTTGCTGGATAATGGTTCAACGGCCTAAC
GTCGCGATATGATGGATACGGCTGCACGTGTCCCTGCTGCCGCAGTAGGT
GGTCTGCGCAATAGATTGATTGCCTTGCGTTTCCACCGCTGACATTGTTA
GAATTGCTATGATCCCTCGAGCCTGCTTCAACACAGAGCACAACAGTCAC
TGGTGGCGAGGAGAAGAGACGTTGATCCGTCCAAGATTCCCGCGCGTTTC
TTGCGCATGTAGAACCGTATTTTCCTTGTTTCATTCCCATACAGCAGCAA
GTACGCAACCGACGGCGACAACGCAGGGGAACCAGCAACTAAACGGCGTG
TGGTTTATATTTGTGTACGTCAACGGTGCCTGCTTGGAGTTTTAGGCCTT
CGCCTCTTCCCCGCCGTTCGTTCGCTTCGCTGACCGGTATTTTAGGGGCA
ACTGAATATATATATAGCCGTTCTTGTGAGAGTTGATTCTCCCGTGAAGC
TTGGCAAAAAAAAAAGGATGGCTAAAAGTAACCGCTCGCGTCCCTTTTGC
CCCCCCGCCTTCTTCCTGCGAGCAGGTTCGAAGGCAACGTCAGGCACAAG
TCAGCCAGGCAGCAATGCCTGTCCATCTCGGATCTTGACATGGCGCTCCT
GTGATGGGACGGACGCATAGTCTACATACGGATGGATGGATGGATACCTC
CGTCGTTTCCCGCCACCGTCTATGCAGGATGGATACCTCCGTCGTTTCCC
GTCGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCGGGGAGATGCAGGAT
GGATACCTCCGTCGTTTCCCGTCTCTACTGCTGCTGCTGCTGCTGCTGCT
GCTGCGGGGAGATGCACCAGGATAACAGCTATTATCAGCCCACGGCCCGT
GTCCCTTGGCCCGGAGAGCAAGAGCGACACCGCGAGACTGATGCGGGGAG
GAACCAAGCGTGTAAGGCAGACGTGAGCGTGTGTTTCGTGTGCCGATAAA
TAGTCGCTCCCCAGGCCGGCTCGAGGCCTTGATTGGTGGGGCGCGGACGG
TGAACAAACAATAAAAAACATTTGCTGCCTCGTTGGTACGCCCGGTGTTC
TGCGTTGTTGGGTGTGCTGGTAGTTGCCAAGTGCCTGATAGGGCCGGTGT
TCTGCGTGGTGGGTAACATGGAGATTGCCAAGTGCTGACATACACGGCAG
TGGAAACGGCTCGAAGAAAAGATAAAAACCTGCCCTTTGTGTGTCTGCGT
TGGATGTACCGGTGAATTGTTTGTGGGGGGCCTGGGTACCCGTGAGATTG
GAGTATCCGGGCACCGAATTTTGTTTTGTTTTGTGGTGTTTTTCGTGTTG
GTTATCGTATCCCACCATAGCTTATTTACTTTACACTGGGGCTGTTATTG
TCATGGATCGGAGGCTCTCTCTCTCTCTCTCCGGCTAAGATCTCAGACGA
ATTGCTTGCTGTCGCGGCTGCTGTTAGAATCAGGATACCTTTTTTGGAAC
ATGCCCCCCGGACCGACGAGCAACCGCCGACAGCGGTAGTTACGTTTCAA
CTTTTGGAGGTTCCGTCACCATTTCTTTTGAGAAGAGGGGGGAAGGCAGT
TCGAGATGACCCCGATTTGCTTCACGGAGCTAGCTGTGTGTTTGCCCTGT
AGGCGTTGCTAGTGTTCCGCTGCTGCGGCGGGGGTAGGTGGTTTGATGTT
AAGGTTTTGGAGGCAAGTCAGCTGGCGAGGTGGTTGTTCCTCCCTGCCGA
CTTGACCTATGGAGTGGGGTATCTCATTCATTGTGTTGCGCTGCTTCATT
TTTCGTCATGTATTTGATTGATGTTTGGTTTCGCGGGGAAGGTGCGTGGC
TGTTTTGGTGACAGGCGTTTGAGTCGGTGTTTTGTGTGAACGTTAAAACG
CCTGCAGTTTGGCGTACTTGATTCTCCTTGTTTGGTTCATACATGGGCTG
CTTGCTTTCGCAGCAGCGGCGTTACGAGACATGAGACTTGGTGTAGAAGG
TGGTGCTTTGTGCTACGGCGGTGTTTGGAGGATAACGATGCTCCTTCCCC
AACTCTCCATGTTTGGTTTGCATGGGCTGCTTTGTTTGCGCAGCGTTGCG
AGACTGAGGCAGGTATAGTAGTAGGTGGTGTCGTGTCGTGCTGCGACGGT
GTTTGGATGATGCTCCCTCCCCGTTTCTTCCTCCAAAGCCGTTCGTTGAT
CCCATAGGTGTTGATATGCATACATTTTCTTGGGTCGGTTTCGTGATGAG
TTGATTAGGTTTTGGCTCGACTACGTAAGTGGTTTGTGTGTGGTTCTCGT
GGACCAACGGTGCTTGAAGCGTTCAAGCTTGGATGCGGTACAAGGAACAT
TCTGTTTCATGTCATCAACGACGAGTGGGTCATATTAGTAGTAGTCGAGA
TACGGTCCAAGAAACGTATTGTTTTATCTTAGCTATGACGGGTCTTACTG
TACTAGTCGAGCTTCCGGTTCTCTCCTTGTTTTGTTTGTGTTCGGCGAGA
GAGTTGGATGCCAGGTGATGGGAGAAAAGAAGTTAATTCTTTCTTGCGCA
TGCATGCATGCCTGTCGTTCGGAAACTTTGCTCTAATAAAAAATTGAACG
CGGGCGGAGTTATTAGTGTTCGGTTTGGTAGCTTGTGAAGCGTCTAGAGC
TTACGCCACGAGGAAGGTAGTGTGGCAGGAAGGTCCTAATTGTATCGTTT
GGGGACGTGAATTAGGGGTATGTGGTTTGCTGCGGCTTTCGTGCGTGTAG
CGCTGTCGCTTGTGCGGCGTTGAGCGCGGTATTTTGAGTGGTTGTGGATG
AGACCCAGAGGAAGCGGGGGGGTGGGAGAGAGAACTGCTGTTGTCAATTA
GGTGTGTTATTCTTTTTGTCGAATAATAGGTGGTTCGGGATGTAACGAGC
CTCCTCATCACGTGCTGCATGCGAAGGCGGAGGGGGGGGTCGTTGATTGC
AATGCGTGTGATACACAGGGTCTTGTTATGAACACGGGGGGGGGGAATCG
TAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig80:326454..329856-

>mRNA_E-siliculosus-1a_M_contig80.16249.1 ID=mRNA_E-siliculosus-1a_M_contig80.16249.1|Name=mRNA_E-siliculosus-1a_M_contig80.16249.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=282bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:326454..329856- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCGCCCCCGCTATCGTCCACCCGCTCGCGGTCGGGAACTGGCTGCTT
CTTCACGGACGAATGTCGCCCCCGCTATCGTCCACCCGCTCGCGGTCGGG
AACTGGCTGCTTCTTCACGGACGAGTTCGAAGGCAACGTCAGGCACAAGT
CAGCCAGGCAGCAATGCCTGTCCATCTCGGATCTTGACATGGCGCTCCTG
TGAGTTCGAAGGCAACGTCAGGCACAAGTCAGCCAGGCAGCAATGCCTGT
CCATCTCGGATCTTGACATGGCGCTCCTGTGA
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