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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig80.16247.1 vs. uniprot
Match: D7FP65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP65_ECTSI) HSP 1 Score: 326 bits (836), Expect = 6.990e-103 Identity = 217/255 (85.10%), Postives = 219/255 (85.88%), Query Frame = 3
Query: 207 MTFTAVSIVMSTFLASPRVEALVPSFAGPGRGVSMVSALIPSQGRAANSIPSTAAGGTPMGPARVFDGSRGHPKRSPTGTXXXXXXXXDAEDARREQHHYPASAVYFTDDDH-LATPSQLPGSPYDQRDLSAGPPEPGGGGVDHRHRAQQLESSQRSGALPAAYHRPWRQRARDARRQTVFENNPEEGFGAEDGXXXXXXXXXXXXXXXXXXXXXXXXDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHVVP 968
MTFTAVSIVMST LASPRVEALVPSFAGPGRGVSMVSALIPSQGRAANSIPST A GTP GPARVFDGSRGHPKRSPTGT XXXXXX LA PSQLPGS YDQRDLSAGPPEPGGG VDHRHRAQQLESSQRSGALPAAYHRPWRQRARDARRQTVFENNPEEGFGAE+GXXXXXXXXXXXXXXXXXXXXXX DSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVH+VP
Sbjct: 1 MTFTAVSIVMSTLLASPRVEALVPSFAGPGRGVSMVSALIPSQGRAANSIPSTTAAGTPTGPARVFDGSRGHPKRSPTGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAKPSQLPGSLYDQRDLSAGPPEPGGG-VDHRHRAQQLESSQRSGALPAAYHRPWRQRARDARRQTVFENNPEEGFGAEEGXXXXXXXXXXXXXXXXXXXXXXRRDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP 254
BLAST of mRNA_E-siliculosus-1a_M_contig80.16247.1 vs. uniprot
Match: A0A6H5JSQ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSQ5_9PHAE) HSP 1 Score: 321 bits (823), Expect = 5.320e-101 Identity = 203/254 (79.92%), Postives = 211/254 (83.07%), Query Frame = 3
Query: 207 MTFTAVSIVMSTFLASPRVEALVPSFAGPGRGVSMVSALIPSQGRAANSIPSTAAGGTPMGPARVFDGSRGHPKRSPTGTXXXXXXXXDAEDARREQHHYPASAVYFTDDDHLATPSQLPGSPYDQRDLSAGPPEPGGGGVDHRHRAQQLESSQRSGALPAAYHRPWRQRARDARRQTVFENNPEEGFGAEDGXXXXXXXXXXXXXXXXXXXXXXXXDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHVVP 968
MTFTAVSI+MST LASPRVEALVPSF G RG +MVSALIP GRAANSIPST AGGTP GPARVF GS G+PK SPTGT DA+DA RE+ H P SAV+F D D A PSQLPGSPY+QRDL AGPPEPGGG VD RHRAQQL SSQRSGALPAAYHRPWRQRARDARRQTVFENNPEE F AE XXXXXXXXXXXXXXXXXX DSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVH+VP
Sbjct: 1 MTFTAVSIMMSTLLASPRVEALVPSFGG--RGFNMVSALIPPHGRAANSIPSTTAGGTPTGPARVFVGSDGNPKLSPTGTAAAAPPSGDADDAHRERQHNPTSAVFFDDVDGHAEPSQLPGSPYEQRDLPAGPPEPGGG-VDQRHRAQQLVSSQRSGALPAAYHRPWRQRARDARRQTVFENNPEERFEAEXXXXXXXXXXXXXXXXXXXXLVASRKDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMVHIVP 251
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 1 |
| Cds size | 765 |
| Model size | 2378 |
| Exons | 3 |
| Ec32 ortholog | Ec-08_000680.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | signal peptide |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936210.085481-UTR-E-siliculosus-1a_M_contig80:320913..321028 | 1622936210.085481-UTR-E-siliculosus-1a_M_contig80:320913..321028 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig80 320914..321028 + |
| 1696250979.2478023-UTR-E-siliculosus-1a_M_contig80:320913..321028 | 1696250979.2478023-UTR-E-siliculosus-1a_M_contig80:320913..321028 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig80 320914..321028 + |
| 1622936210.1028333-UTR-E-siliculosus-1a_M_contig80:322089..322180 | 1622936210.1028333-UTR-E-siliculosus-1a_M_contig80:322089..322180 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig80 322090..322180 + |
| 1696250979.2562494-UTR-E-siliculosus-1a_M_contig80:322089..322180 | 1696250979.2562494-UTR-E-siliculosus-1a_M_contig80:322089..322180 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig80 322090..322180 + |
| 1622936210.1454215-UTR-E-siliculosus-1a_M_contig80:323747..325154 | 1622936210.1454215-UTR-E-siliculosus-1a_M_contig80:323747..325154 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig80 323748..325154 + |
| 1696250979.284753-UTR-E-siliculosus-1a_M_contig80:323747..325154 | 1696250979.284753-UTR-E-siliculosus-1a_M_contig80:323747..325154 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | UTR | E-siliculosus-1a_M_contig80 323748..325154 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622936210.1171122-CDS-E-siliculosus-1a_M_contig80:322180..322274 | 1622936210.1171122-CDS-E-siliculosus-1a_M_contig80:322180..322274 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 322181..322274 + |
| 1696250979.2647142-CDS-E-siliculosus-1a_M_contig80:322180..322274 | 1696250979.2647142-CDS-E-siliculosus-1a_M_contig80:322180..322274 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 322181..322274 + |
| 1622936210.1314707-CDS-E-siliculosus-1a_M_contig80:323076..323747 | 1622936210.1314707-CDS-E-siliculosus-1a_M_contig80:323076..323747 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 323077..323747 + |
| 1696250979.2728941-CDS-E-siliculosus-1a_M_contig80:323076..323747 | 1696250979.2728941-CDS-E-siliculosus-1a_M_contig80:323076..323747 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig80 323077..323747 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig80.16247.1 >prot_E-siliculosus-1a_M_contig80.16247.1 ID=prot_E-siliculosus-1a_M_contig80.16247.1|Name=mRNA_E-siliculosus-1a_M_contig80.16247.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=255bp
MTFTAVSIVMSTFLASPRVEALVPSFAGPGRGVSMVSALIPSQGRAANSI PSTAAGGTPMGPARVFDGSRGHPKRSPTGTAAAAPPSGDAEDARREQHHY PASAVYFTDDDHLATPSQLPGSPYDQRDLSAGPPEPGGGGVDHRHRAQQL ESSQRSGALPAAYHRPWRQRARDARRQTVFENNPEEGFGAEDGGGGSLVG ARRRRASEKEEVVASRRDSQQKAINRAALPIVDLVGLVSPLVLIAGMTMV HVVP* back to topmRNA from alignment at E-siliculosus-1a_M_contig80:320914..325154+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig80.16247.1 ID=mRNA_E-siliculosus-1a_M_contig80.16247.1|Name=mRNA_E-siliculosus-1a_M_contig80.16247.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4241bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:320914..325154+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) CTCCGGACTCCGGACGAAATCAACGCTAGGCCTCGTACCTCAGGTTCCCT
CTTCGAACCTGGACCAGCTCACGAGAGGAAGACAGAGAGACAGAGACAGG
GAGCGTATCAATTAGGTGAGTGTTCGTGTGCAGCAACGGGATTGCTGATG
ATGATGTGGTGATCGCAGTGTACGTGACACGTGAGACAAGTGAGACACGA
TTCGTTCGTTGGCACAGCAGGAAAAGCCAACGGGTCCCCCCCTCGCCCTA
CAGCAGCAGTAGCACGGATACCCTAGAGTGCGGGAGCGTTACCGTCTTAC
CGTGCGATCACCTTTGTTGAGTCGAAGTGCCGGAGCACGGCTTATCACCT
TGCGTGTGTGGTACAGCAGGAACAACATTTGTGGCATCAAACACAATTTG
TAGTCTAGGTTTGAATGTCAACGTACAGAACATCGCGGGACCGCAGCACT
AAACAATGGTGCAGCTGACTGGTGTATCAGGCTTCGGCTCACGCTAGGAT
GGTAAACAGCTCACACACCTTACGCCCTTGTCTACATTGAGCCGAGATTG
GTTCCAGAAGTGCGGGGCTGTGGAGAAAAGGCACCCATGACACCATGAAT
GCCACGCTTCCGAAGAGACGGCCGGCGTGTCATCATGATTCTCTCCGAAC
TGGAACGGCCGCTAACCGCCCCCCCCCCAGCCCCCTCCCACCCCCCCCCA
CCACATCACGGATGTATGTGACGCTTGGCCCTACTTGCTCATTGTGTTGG
TTCGAGATCACCCCTGTCCGACCAAGCCCGCTGTTTACGTTGTAATATAT
GAGGTCTGGTCTTCGTACTGTGTCTACCGTAACTAATCCCTGGTTCTTCA
GCGGTGGGGTTTCATGCATTGTCATCCGGTCCGTTGGAAGGAAATGTGTT
TTTTTTCTTCTCATCAACACACAACGAGTGAGTTTCTTTTTCTGGTCTTG
GCGGAAGAACATACAGCGGGGTTCGTCACACACACTCGTCACACACGTAC
GTGAGTGAGCACATGGTTGGACATGGTGATGACACGAACGAAAATATGCT
TGCCCTACGCTCCCTCAACGCTCGTCACCCCCCCCCTTTGGTCGTTGTCT
CAGAATTCGCTCCTGTATCACGAACAACGTCTAACCCCCCTCTGCCCTGG
TGCCCCCCGCTCCATCTGATAACCAGGAACTACACTCACAACACACAGAC
AGGGGCCATCTCCGCCATATACTTACGCACAAGCTCCGAGCGTGCCGCGG
ATCTCATCTCGGAGAAAATGACTTTCACGGCTGTGTCCATTGTGATGTCG
ACTTTCCTTGCGTCTCCGAGGGTAGAGGCGCTTGTGCCTTCATTCGCTGG
ACCAGGTCGAGGTAAGCCTGAGTCCGAGGGTTTTTACTTTGTGTTGTACA
ATGATGTGCATACAACGAAGACAGCAAATACATAGAGGTAGTGTTGATTC
AACGAAAGGAGTCAACCGCTCTCGAGAACACCAATGACCGGTCCGATGCA
GATACCTACTTTACCACTGGTAAACATCCGTGAAGGTTTATTGTTTTTCT
TGTTCTTCTGCCGTTTTTTAAATGGGGTATACAAGCGCTTGCAATTGTCC
GCTGCTCCTGATATCGTCTCGGACAACAGTTTGCTGATTTTCGGTGCTTG
TTAGACCATACCCCGCGCGGGCAGCCGCAACGCTTCCGGAACAAGCTAAC
GGTATCATCATGGTGTTACGCTTTTCGCCCCTACTGTAGTTTCTTTTTTT
CTTTTTTCTTTTGACAGTTGGAAGGACGATGATGACGCACTCTCCTGAAG
GCAACAGTATTCGACGCTACGTTTTGTCTGTATTTTATGAGATGGTAAAT
AGAAACACTGGGTGATCGTTTCACACTCGGTGTTGCTAACCATGTCTGTG
GACGGAGGCACGGACGACGTGTTCGCAGATAGCAAGATGATGGGGCCTGT
CTTACATGGATGTTTTGTTTCTCTCAGATGATGAACTTTCGAGTCAACGT
GCCCTAAACATGACACCACAGGAAGCTCCAGCTGAACGTTGGTGGCGCCA
CTGGCTGCACTTCAATACAATAGTCTTGGCGTCGTAGCCATCGATCGCTT
ATCACATCCTGATCCCTTTTTTGCGAACCCCTCGGTTTCCCTACCCCCAC
CGCAACGACGCAGGCGTCAGCATGGTGAGCGCCTTGATCCCCTCGCAGGG
CAGGGCAGCAAACAGCATCCCCTCCACCGCCGCCGGCGGCACGCCGATGG
GCCCAGCCCGAGTCTTCGACGGTTCACGCGGCCACCCGAAACGTTCACCG
ACAGGCACTGCTGCTGCTGCTCCACCCTCCGGAGATGCTGAGGACGCTCG
CCGCGAGCAGCACCACTACCCCGCATCGGCGGTATACTTTACCGACGACG
ACCACCTCGCCACACCCTCACAGCTTCCGGGCTCCCCGTACGACCAGCGA
GATCTATCCGCGGGGCCCCCAGAGCCCGGCGGCGGCGGCGTCGACCACCG
CCACCGCGCCCAGCAGCTTGAGTCCTCCCAGCGTAGCGGCGCCTTGCCGG
CGGCCTACCACCGTCCCTGGCGGCAGCGCGCCCGCGACGCGAGACGCCAG
ACGGTTTTCGAGAACAACCCGGAGGAGGGCTTTGGGGCCGAGGACGGCGG
GGGGGGTAGCCTGGTGGGCGCTAGGAGGAGGCGGGCTTCGGAGAAGGAGG
AGGTTGTGGCTTCGCGGAGGGACTCCCAGCAGAAGGCCATCAACAGGGCG
GCGCTGCCCATCGTGGATCTCGTGGGCCTTGTCTCGCCGCTTGTTCTGAT
CGCGGGGATGACCATGGTGCACGTAGTGCCGTGAAGTTCAAAAAAATGGC
GTTGAGTGCCTCAAAAAGCAGAGTGCTGGTTTGTCTTGGACTTCTGTTGC
TAAAAAAATAACGGGATCGATCGGTGGCGTGTGATGATTGCATGGATGGA
TGGCACCCTGGGAAGTGGTGGTGTACGTTGGGGTTTGATGTGTGCGTATA
TGTATCAGCGCAATAGAAGTATTCTTGCGCGCAATTTTGACACGAGAAGC
TGAAAAGGTGGGGTAACAAACAGAGCTACATCAAAAGGCTGTACGCCCTG
GTGCAGCATCTCCTCCTGGGGGTGACGTAGCGGTATAGGTACAGGCGGTA
CTGGTAGCGTGGTGTTGGTCGTCCATGGAACGACACAAGGCGACCCATGT
GTGTGACGGAAGAGCATGTCCGCGGGATACCCGCGGCGGTGTAGAACGTG
TTCTTTCGCTGTTTCTTTTGTTATTGTTGTTGTGATCATGTCGTCCGTCC
CTCGTGCTGTTTTTCTCAATTTTCTGAGTGTTATGTCGGGGCCCATCTCC
CGCGCTGTTTCAAACAATTTTGGGTTTGTTGTAAGACTGTCATGTACTTG
TAGTGGTGTCCGTCAATGATGTTTCATGTCGAGGGCGAGGGACGGACCGC
CCGTGACGGAAGCTAGCAATGGCGGGCGTTGGCAAAGGTGGTGCTGTTTG
GCTTTGTATCGAGTGATGAGTGGTTTTGTAATGCCTCTAGGCCAAAGTTG
ATGGCCCAAATTTTGTTTAAGGAAATCGATTTTGGATATGTTGACGTTGT
GGCCCCCAAGGGTATTTGAGGGTTGGTCTTTGCCTATGCTGTTTCTCCCA
TACTAATAATAGTGATAGGGAAGACTCCATAAGGGTCTCTGCCGCAGTAC
CAACGTTGGAGGGAGGATTTGGATGTAAAATTGACGGAGGCTTCGATGGC
CGTAATTTTGAGATTGTCGAAAAGAAAAAAAGACAGGGGAAATGTTTGGA
GTATCTCTGTGCAGCGCGGGGTAAATTGCTGCGTCTTGCATGCATATGTC
TTGGCTTGTTTGCGGCAGTCACACGTCGGTGGGCACCAACGTGTGGGTTG
GGTGTTGCGACTATGTAGTGGGTGAAAGAGTGCTCTCTGATGTTTCGTGC
TGCTTTGATCATATGTATACAGCTGGTGGGTGGTTTTCGTGGGCTGACGT
TGAGCCAAGGGTGCGTGTGTGTGTTGCGTGCGTTGCGTATGTATGTGTTG
TTCGGGTCGAGAGGCAATGCGAGCTCCTCGGCGTGTCTACCGAATTGCGT
CGTGATCATGTTTCGATTGTTATTTTCCTTTTCTTCTGGCCTACACACCA
CATGCTTCCTTGTTCTTGGGGTGTTTTTGATGCTGCTGGCTGACTTCCTC
CCGCCTTGGGGGGGGGAAGAAGAGGCAACGTTGGCGACGGT back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig80:320914..325154+ >mRNA_E-siliculosus-1a_M_contig80.16247.1 ID=mRNA_E-siliculosus-1a_M_contig80.16247.1|Name=mRNA_E-siliculosus-1a_M_contig80.16247.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1530bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:320914..325154+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male) ATGACTTTCACGGCTGTGTCCATTGTGATGTCGACTTTCCTTGCGTCTCC GAGGGTAGAGGCGCTTGTGCCTTCATTCGCTGGACCAGGTCGAGATGACT TTCACGGCTGTGTCCATTGTGATGTCGACTTTCCTTGCGTCTCCGAGGGT AGAGGCGCTTGTGCCTTCATTCGCTGGACCAGGTCGAGGCGTCAGCATGG TGAGCGCCTTGATCCCCTCGCAGGGCAGGGCAGCAAACAGCATCCCCTCC ACCGCCGCCGGCGGCACGCCGATGGGCCCAGCCCGAGTCTTCGACGGTTC ACGCGGCCACCCGAAACGTTCACCGACAGGCACTGCTGCTGCTGCTCCAC CCTCCGGAGATGCTGAGGACGCTCGCCGCGAGCAGCACCACTACCCCGCA TCGGCGGTATACTTTACCGACGACGACCACCTCGCCACACCCTCACAGCT TCCGGGCTCCCCGTACGACCAGCGAGATCTATCCGCGGGGCCCCCAGAGC CCGGCGGCGGCGGCGTCGACCACCGCCACCGCGCCCAGCAGCTTGAGTCC TCCCAGCGTAGCGGCGCCTTGCCGGCGGCCTACCACCGTCCCTGGCGGCA GCGCGCCCGCGACGCGAGACGCCAGACGGTTTTCGAGAACAACCCGGAGG AGGGCTTTGGGGCCGAGGACGGCGGGGGGGGTAGCCTGGTGGGCGCTAGG AGGAGGCGGGCTTCGGAGAAGGAGGAGGTTGTGGCTTCGCGGAGGGACTC CCAGCAGAAGGCCATCAACAGGGCGGCGCTGCCCATCGTGGATCTCGTGG GCCTTGTCTCGCCGCTTGTTCTGATCGCGGGGATGACCATGGTGCACGTA GTGCCGTGAGCGTCAGCATGGTGAGCGCCTTGATCCCCTCGCAGGGCAGG GCAGCAAACAGCATCCCCTCCACCGCCGCCGGCGGCACGCCGATGGGCCC AGCCCGAGTCTTCGACGGTTCACGCGGCCACCCGAAACGTTCACCGACAG GCACTGCTGCTGCTGCTCCACCCTCCGGAGATGCTGAGGACGCTCGCCGC GAGCAGCACCACTACCCCGCATCGGCGGTATACTTTACCGACGACGACCA CCTCGCCACACCCTCACAGCTTCCGGGCTCCCCGTACGACCAGCGAGATC TATCCGCGGGGCCCCCAGAGCCCGGCGGCGGCGGCGTCGACCACCGCCAC CGCGCCCAGCAGCTTGAGTCCTCCCAGCGTAGCGGCGCCTTGCCGGCGGC CTACCACCGTCCCTGGCGGCAGCGCGCCCGCGACGCGAGACGCCAGACGG TTTTCGAGAACAACCCGGAGGAGGGCTTTGGGGCCGAGGACGGCGGGGGG GGTAGCCTGGTGGGCGCTAGGAGGAGGCGGGCTTCGGAGAAGGAGGAGGT TGTGGCTTCGCGGAGGGACTCCCAGCAGAAGGCCATCAACAGGGCGGCGC TGCCCATCGTGGATCTCGTGGGCCTTGTCTCGCCGCTTGTTCTGATCGCG GGGATGACCATGGTGCACGTAGTGCCGTGA back to top
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