mRNA_E-siliculosus-1a_M_contig80.16231.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig80.16231.1 vs. uniprot
Match: A0A6H5J997_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J997_9PHAE) HSP 1 Score: 1052 bits (2720), Expect = 0.000e+0 Identity = 715/977 (73.18%), Postives = 738/977 (75.54%), Query Frame = 3
Query: 78 GRG---VCRKLGQGEVGYVATTHTMSGVYRKWDCQRRNPVDTTWKTTPKNKEMDEDLTKRVVPGASKGQVAFQARGLDLNSNKASTRAKPRGRRKAXXXXXXXXXXXXXXXXXXXWEAASRKRRGQKETRVAPHSYVVRKTAAAPFWLSPGVQFGRSNCRGWFPTRQDWSARGIPQCIYVPLEPSTEDRVEAMRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYERKYGTEAEXXXXXXXXXXXXXXAMAERESLQRDEEKQLMEVIKASLVESLGAGEKDDRAVIAALEASKRDSENDAREEGEDPDVLKVMAESRRQHEAMQELRRVHGDMSSVRPQFQSAAETATTAVSFAGDQANRHPPLTQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPMAPDWLVSELPVPAPAGTGGFVQAPRQGYQGQAYSAGIDQVHTASPPTPHPXXXXXXXXXXXXXXX--VYAPHATGGGGGVHMETTHPGLEPTMAQHAYSVQQQQQ----QPMRIPSRFDDGNVGVPPXXXXXXXXXXPPSPSVQGPPALLXXXXXXXX--TLDHGAKATQGALAGRQPASSQXXXXXXXXXXXXXXXXXX-PXXXXXXXXXXXXXXXXXXXXXXXKRDGLVAAGGAAQLAGWAVRGSATCGAPGGAGLLPPAPPVQKTAWGAAGQASDGLSAEERELEAVLEASRIAEETRQREDAESKIAMDMALKMSMMETSATPSGGERYGHGRGKYYQQPAATTGYPAQPPPLSAPAAANGFRPNGGGWQGQXXXXXPAPNASYTPMAXXXXXXXXXXXXXGAPTAVSPRAPGAYSAAGRPLSPRQQGAPSQVVPTRPPPADGSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELAWVLEQSRLEAEIQKSRMAIAEEGEEEMMXXXXXXXXXXQEKRNAEQLEFQRAMQASLGS 2972
GRG VCRKLGQGEVGYVATTHTMSGVYRKWDCQRRNPVDTTWKTTPKNKE+DEDLTKRVVPGAS+GQVAFQARGLDLNSNKAS AKPRGRR XXXXXXXXXXXXXXXXX WEAASRKRRGQKETRVAPHSYVVRKTAAAPFWLSPGVQFGRSNCRGWFPTRQDWSARGIPQCIYVPLEPSTEDRVEAMRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYE+KYGTEAE AMAE ESLQRDEEKQLMEVIKASLVESLGAGEKDDR VIAALEASKRDSE +AREEGED DVLKVM ESRRQHEAMQELRRVHGDMSSV P QSAAETATTAVS+AGDQ N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPMAPDWLVSELPV APAG GF+QAPRQGYQGQAYSAG++Q HTA+PPT XXXXXXXXXXXXXXX VYAPHATG GGVHMETTHPGLEPT +QHAYSVQ+QQ QPMRIP+RFDDGN+ +PPXXX P SPSVQGP XXXXXXXX TLDH A+AT ALAGRQPASSQ P XXXXXXXX AQLAGWAVRGSATCGAPGG G+LPPAPPV+K AWGAAGQASDGLSAEERELEAVLEASRI EETR+RE+AESKIAMDMALKMSMME SA PSGGERYGH RG YYQQPAATTGYP QPPPLS AAANGFRPN GG Q Q XXX PAPNASY+PMA AP AV RQQGAPSQV+PTRPPPA+GSVG DELAWVLEQSRLEAEIQ SRM IAE+GEEEMM QEKRNAEQLEFQRAMQASLGS
Sbjct: 851 GRGGVSVCRKLGQGEVGYVATTHTMSGVYRKWDCQRRNPVDTTWKTTPKNKEVDEDLTKRVVPGASRGQVAFQARGLDLNSNKASALAKPRGRRHGXXXXXXXXXXXXXXXXX--WEAASRKRRGQKETRVAPHSYVVRKTAAAPFWLSPGVQFGRSNCRGWFPTRQDWSARGIPQCIYVPLEPSTEDRVEAMRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYEKKYGTEAEREKRREAHAKARVKAMAECESLQRDEEKQLMEVIKASLVESLGAGEKDDRDVIAALEASKRDSEYNAREEGEDADVLKVMVESRRQHEAMQELRRVHGDMSSVPPHSQSAAETATTAVSYAGDQTNHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPMAPDWLVSELPVAAPAGAAGFMQAPRQGYQGQAYSAGMNQGHTATPPTXXXXXXXXXXXXXXXXXXXAVYAPHATGDCGGVHMETTHPGLEPTNSQHAYSVQEQQXXXXXQPMRIPARFDDGNLAMPPXXXATAPVGVPTSPSVQGPXXXXXXXXXXXXXXTLDHRAEATPCALAGRQPASSQQTILCHGTTPLLTAQQQPWPQGSGAELSGYMMMNGXXXXXXXXXXXXXXXXXXXAQLAGWAVRGSATCGAPGGGGVLPPAPPVRKAAWGAAGQASDGLSAEERELEAVLEASRIEEETRRREEAESKIAMDMALKMSMMEASAAPSGGERYGHDRGNYYQQPAATTGYPTQPPPLSVLAAANGFRPNEGGRQRQQXXXHPAPNASYSPMAASASAAAPPPV---APMAVXXXXXXXXXXXXXXXXXRQQGAPSQVLPTRPPPANGSVGDGGGESAEGDREEDEAARELRIALEEEEQYYEAKDAAGRTGGPSPPSKAGASTGRGGQQEDELAWVLEQSRLEAEIQVSRMVIAEKGEEEMMDKVLEESRLEQEKRNAEQLEFQRAMQASLGS 1822
BLAST of mRNA_E-siliculosus-1a_M_contig80.16231.1 vs. uniprot
Match: D7FRG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG7_ECTSI) HSP 1 Score: 633 bits (1633), Expect = 1.380e-211 Identity = 568/916 (62.01%), Postives = 574/916 (62.66%), Query Frame = 3
Query: 225 MDEDLTKRVVPGASKGQVAFQARGLDLNSNKASTRAKPRGRRKAXXXXXXXXXXXXXXXXXXXWEAASRKRRGQKETRVAPHSYVVRKTAAAPFWLSPGVQFGRSNCRGWFPTRQDWSARGIPQCIYVPLEPSTEDRVEAMRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYERKYGTEAEXXXXXXXXXXXXXXAMAERESLQRDEEKQLMEVIKASLVESLGAGEKDDRAVIAALEASKRDSENDAREEGEDPDVLKVMAESRRQHEAMQELRRVHGDMSSVRPQFQSAAETATTAVSFAGDQANRHPPLTQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPMAPDWLVSELPVPAPAGTGGFVQAPRQGYQGQAYSAGIDQVHTASPPTPHPXXXXXXXXXXXXXXXVYAPHATGGGGGVHMETTHPGLEPTMAQHAYSVQQQQQQPMRIPSRFDDGNVGVPPXXXXXXXXXXPPSPSVQGPPALLXXXXXXXXTLDHGAKATQGALAGRQPASSQXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXKRDGLVAAGGAAQLAGWAVRGSATCGAPGGAGLLPPAPPVQKTAWGAAGQASDGLSAEERELEAVLEASRIAEETRQREDAESKIAMDMALKMSMMETSATPSGGERYGHGRGKYYQQPAATTGYPAQPPPLSAPAAANGFRPNGGGWQGQXXXXXPAPNASYTPMAXXXXXXXXXXXXXGAPTAVSPRAPGAYSAAGRPLSPRQQGAPSQVVPTRPPPADGSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDELAWVLEQSRLEAEIQKSRMAIAEEGEEEMMXXXXXXXXXXQEKRNAEQLEFQRAMQASLGS 2972
MDEDLT RVVPGASKGQVAFQARGL+LNSNKAS RAKPRGRRKAXXXXXXX WEAASRKRRGQKETRVAPHSYVVRKTAAAPFWLSPGVQFGRSNCRGWFPTRQDWSARGIPQCIYVPLEPSTEDRVEAMRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYE+KYGTEAE XXXXXXXXXXXXXAMAERESLQRDEEKQLMEVIKASLVE GPPA XXXXTLDH +AT GAL GRQPASSQ XXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXX AAQLAGWAVRGSATCGAPGG G+LPPAPPVQK AWGAAGQASDGLSAEEREL+AVLEASRIAEETRQREDAESKIAMDMALKMSMMET A PS GERYGHGRG YYQQPAATTGYPAQPPPLS A ANGFRP GGGWQGQ PAPNA Y+PMA A TAVSPRAPGAYSAAGRPLSPRQQGAPSQVVPTRPPPADGSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DELAWVLEQSRLEAEIQKSRMAIAEEGEEE XXXXXXXXXX EKRNAEQLEFQRAMQASLGS
Sbjct: 1 MDEDLTNRVVPGASKGQVAFQARGLELNSNKASARAKPRGRRKAXXXXXXXLRTVKEEKEEA-WEAASRKRRGQKETRVAPHSYVVRKTAAAPFWLSPGVQFGRSNCRGWFPTRQDWSARGIPQCIYVPLEPSTEDRVEAMRLGHERVVGLTLEEDEERLMRIAIRESAAESRRAYEKKYGTEAERXXXXXXXXXXXXXAMAERESLQRDEEKQLMEVIKASLVE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPPA-----PXXXXTLDHRTEATPGALTGRQPASSQQAILHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQLAGWAVRGSATCGAPGGGGVLPPAPPVQKAAWGAAGQASDGLSAEERELKAVLEASRIAEETRQREDAESKIAMDMALKMSMMETPAAPSSGERYGHGRGNYYQQPAATTGYPAQPPPLSTSATANGFRPKGGGWQGQQQPPRPAPNAGYSPMATAAAAAPPPV----ASTAVSPRAPGAYSAAGRPLSPRQQGAPSQVVPTRPPPADGSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE-DELAWVLEQSRLEAEIQKSRMAIAEEGEEEXXXXXXXXXXXXXEKRNAEQLEFQRAMQASLGS 640 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig80.16231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig80.16231.1 >prot_E-siliculosus-1a_M_contig80.16231.1 ID=prot_E-siliculosus-1a_M_contig80.16231.1|Name=mRNA_E-siliculosus-1a_M_contig80.16231.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=945bp MSGVYRKWDCQRRNPVDTTWKTTPKNKEMDEDLTKRVVPGASKGQVAFQAback to top mRNA from alignment at E-siliculosus-1a_M_contig80:154886..163604+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig80.16231.1 ID=mRNA_E-siliculosus-1a_M_contig80.16231.1|Name=mRNA_E-siliculosus-1a_M_contig80.16231.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8719bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:154886..163604+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig80:154886..163604+ >mRNA_E-siliculosus-1a_M_contig80.16231.1 ID=mRNA_E-siliculosus-1a_M_contig80.16231.1|Name=mRNA_E-siliculosus-1a_M_contig80.16231.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=5670bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig80:154886..163604+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |