mRNA_E-siliculosus-1a_M_contig8.16195.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16195.1
Unique NamemRNA_E-siliculosus-1a_M_contig8.16195.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig8.16195.1 vs. uniprot
Match: D7FNY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY0_ECTSI)

HSP 1 Score: 416 bits (1068), Expect = 1.100e-144
Identity = 228/250 (91.20%), Postives = 229/250 (91.60%), Query Frame = 1 
Query:    1 MTRVVLLQXXXXXXXXXXXXXAAAVNSSHLRPSSPTGASISQQQARTLHYTQCRSLSGSDKAPTTSSRDDKDADATAQTAPNTGTPPAAGGIFGNLPARTAAARAGRGCLIALPLAGIGFSAWTCVTDYRRVRHELKLARVGLALAEMSYQRDAGRKGDSGGDGGGANSATRPTFDASPARSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYLAANRNAAEALARG 750
            MTRVVL Q    XX       AAAVNSSHLRPSSPTGASISQQQARTLHYT+CRSLSGSDKA TTSS DDKDADATAQ APNTGTPPAAGGIFGNLPARTAAARAGRGCLIALPLAGIGFSAWTCVTDYRRVRHELKLARVGLALAEMSYQRDAGRKGD G     ANSATRPTFDASPARSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYLAANRNAAEALARG
Sbjct:    1 MTRVVL-QHHAAXXARLFLRRAAAVNSSHLRPSSPTGASISQQQARTLHYTRCRSLSGSDKASTTSSSDDKDADATAQRAPNTGTPPAAGGIFGNLPARTAAARAGRGCLIALPLAGIGFSAWTCVTDYRRVRHELKLARVGLALAEMSYQRDAGRKGDGGXXXXDANSATRPTFDASPARSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYLAANRNAAEALARG 249
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig8.16195.1 vs. uniprot
Match: A0A6H5KN63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN63_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 4.590e-131
Identity = 213/252 (84.52%), Postives = 218/252 (86.51%), Query Frame = 1 
Query:   64 AAAVNSSHLRPSSPTGASISQQQARTLHYTQCRSLSGSDKAPTTSSRDDKDADATAQTAPNTGTPPAAGGIFGNLPARTAAARAGRGCLIALPLAGIGFSAWTCVTDYRRVRHELKLARVGLALAEMSYQRDAGRKGDSGGDGGGA--NSATRPTFDASPARSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYLAANR---------NAAEALARGGGGTAPGARGDG 786
            AAA+NSSHLRP S TGASISQQQARTLHYTQCRSLSGSDKA T +SRDDKDADATAQTAPNTGTPPAAGGIFGNLPARTAAARAGRGCLIALP+ GIGFSAWTCVTDYRRVRHELK A VGLALAEMS+QR+AGRKGDS         NSATRPT DASP RSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYLAANR          AAEALARG GGT   A  DG
Sbjct:   47 AAAINSSHLRPPSLTGASISQQQARTLHYTQCRSLSGSDKASTMNSRDDKDADATAQTAPNTGTPPAAGGIFGNLPARTAAARAGRGCLIALPIVGIGFSAWTCVTDYRRVRHELKRACVGLALAEMSFQREAGRKGDSXXXXXXXXXNSATRPTLDASPVRSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYLAANRMRQISGRRRTAAEALARGEGGTGASAPSDG 298
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNY0_ECTSI1.100e-14491.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN63_9PHAE4.590e-13184.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:1889791..1890621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size831
Model size831
Exons1
Ec32 orthologEc-10_004760.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936197.653108-CDS-E-siliculosus-1a_M_contig8:1889790..18906211622936197.653108-CDS-E-siliculosus-1a_M_contig8:1889790..1890621Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1889791..1890621 -
1696250973.404283-CDS-E-siliculosus-1a_M_contig8:1889790..18906211696250973.404283-CDS-E-siliculosus-1a_M_contig8:1889790..1890621Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1889791..1890621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16195.1prot_E-siliculosus-1a_M_contig8.16195.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig8 1889791..1890621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig8.16195.1

>prot_E-siliculosus-1a_M_contig8.16195.1 ID=prot_E-siliculosus-1a_M_contig8.16195.1|Name=mRNA_E-siliculosus-1a_M_contig8.16195.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=277bp
MTRVVLLQHHAAAAARLFLRRAAAVNSSHLRPSSPTGASISQQQARTLHY
TQCRSLSGSDKAPTTSSRDDKDADATAQTAPNTGTPPAAGGIFGNLPART
AAARAGRGCLIALPLAGIGFSAWTCVTDYRRVRHELKLARVGLALAEMSY
QRDAGRKGDSGGDGGGANSATRPTFDASPARSFSVALVADAGVLGFHLLA
AYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYLAANRNAAEALARG
GGGTAPGARGDGGGESSGGGSHENTV*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig8:1889791..1890621-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig8.16195.1 ID=mRNA_E-siliculosus-1a_M_contig8.16195.1|Name=mRNA_E-siliculosus-1a_M_contig8.16195.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=831bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1889791..1890621- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACTCGTGTTGTTCTTCTTCAACACCATGCCGCCGCGGCAGCCCGTTT
GTTCCTTCGGCGTGCGGCGGCCGTCAACAGCAGCCACCTCCGACCATCCT
CTCCTACGGGCGCCTCGATTAGCCAGCAGCAGGCGCGAACGTTGCACTAC
ACTCAGTGTCGTAGCCTCAGTGGATCCGACAAGGCACCAACGACGAGCAG
CAGGGACGACAAAGACGCCGATGCAACCGCACAGACGGCGCCTAATACCG
GCACACCTCCCGCCGCCGGGGGCATCTTCGGAAACCTGCCCGCTCGCACA
GCCGCCGCCCGAGCGGGCCGCGGCTGCCTGATAGCCCTCCCTCTCGCGGG
CATCGGGTTTTCGGCCTGGACTTGCGTTACGGACTATCGCAGGGTCCGAC
ACGAGCTGAAGCTCGCGCGCGTGGGCCTCGCCCTCGCCGAGATGAGCTAC
CAGCGGGACGCCGGCCGGAAGGGAGACAGCGGCGGCGACGGCGGCGGCGC
GAACTCGGCAACTCGGCCGACGTTTGACGCTTCTCCCGCGCGCTCCTTCA
GCGTTGCGTTGGTGGCAGACGCGGGCGTCTTGGGCTTCCACCTTCTCGCG
GCGTACGGGTTGTGGCACGGCTGGGATCCGGACCCCATCGTCAACGCAGA
GATAGGCAACCTGGTCGCCGCGGTCGTGTCGACGGGAGGGGGGTTGCGAG
GGGAGTATCTGGCGGCTAACCGCAACGCCGCGGAGGCGTTGGCACGCGGG
GGAGGAGGTACGGCCCCTGGCGCTCGAGGCGACGGCGGCGGCGAGAGCAG
CGGCGGGGGAAGTCACGAGAATACCGTCTAG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:1889791..1890621-

>mRNA_E-siliculosus-1a_M_contig8.16195.1 ID=mRNA_E-siliculosus-1a_M_contig8.16195.1|Name=mRNA_E-siliculosus-1a_M_contig8.16195.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1662bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1889791..1890621- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACTCGTGTTGTTCTTCTTCAACACCATGCCGCCGCGGCAGCCCGTTT
GTTCCTTCGGCGTGCGGCGGCCGTCAACAGCAGCCACCTCCGACCATCCT
CTCCTACGGGCGCCTCGATTAGCCAGCAGCAGGCGCGAACGTTGCACTAC
ACTCAGTGTCGTAGCCTCAGTGGATCCGACAAGGCACCAACGACGAGCAG
CAGGGACGACAAAGACGCCGATGCAACCGCACAGACGGCGCCTAATACCG
GCACACCTCCCGCCGCCGGGGGCATCTTCGGAAACCTGCCCGCTCGCACA
GCCGCCGCCCGAGCGGGCCGCGGCTGCCTGATAGCCCTCCCTCTCGCGGG
CATCGGGTTTTCGGCCTGGACTTGCGTTACGGACTATCGCAGGGTCCGAC
ACGAGCTGAAGCTCGCGCGCGTGGGCCTCGCCCTCGCCGAGATGAGCTAC
CAGCGGGACGCCGGCCGGAAGGGAGACAGCGGCGGCGACGGCGGCGGCGC
GAACTCGGCAACTCGGCCGACGTTTGACGCTTCTCCCGCGCGCTCCTTCA
GCGTTGCGTTGGTGGCAGACGCGGGCGTCTTGGGCTTCCACCTTCTCGCG
GCGTACGGGTTGTGGCACGGCTGGGATCCGGACCCCATCGTCAACGCAGA
GATAGGCAACCTGGTCGCCGCGGTCGTGTCGACGGGAGGGGGGTTGCGAG
GGGAGTATCTGGCGGCTAACCGCAACGCCGCGGAGGCGTTGGCACGCGGG
GGAGGAGGTACGGCCCCTGGCGCTCGAGGCGACGGCGGCGGCGAGAGCAG
CGGCGGGGGAAGTCACGAGAATACCGTCTAGATGACTCGTGTTGTTCTTC
TTCAACACCATGCCGCCGCGGCAGCCCGTTTGTTCCTTCGGCGTGCGGCG
GCCGTCAACAGCAGCCACCTCCGACCATCCTCTCCTACGGGCGCCTCGAT
TAGCCAGCAGCAGGCGCGAACGTTGCACTACACTCAGTGTCGTAGCCTCA
GTGGATCCGACAAGGCACCAACGACGAGCAGCAGGGACGACAAAGACGCC
GATGCAACCGCACAGACGGCGCCTAATACCGGCACACCTCCCGCCGCCGG
GGGCATCTTCGGAAACCTGCCCGCTCGCACAGCCGCCGCCCGAGCGGGCC
GCGGCTGCCTGATAGCCCTCCCTCTCGCGGGCATCGGGTTTTCGGCCTGG
ACTTGCGTTACGGACTATCGCAGGGTCCGACACGAGCTGAAGCTCGCGCG
CGTGGGCCTCGCCCTCGCCGAGATGAGCTACCAGCGGGACGCCGGCCGGA
AGGGAGACAGCGGCGGCGACGGCGGCGGCGCGAACTCGGCAACTCGGCCG
ACGTTTGACGCTTCTCCCGCGCGCTCCTTCAGCGTTGCGTTGGTGGCAGA
CGCGGGCGTCTTGGGCTTCCACCTTCTCGCGGCGTACGGGTTGTGGCACG
GCTGGGATCCGGACCCCATCGTCAACGCAGAGATAGGCAACCTGGTCGCC
GCGGTCGTGTCGACGGGAGGGGGGTTGCGAGGGGAGTATCTGGCGGCTAA
CCGCAACGCCGCGGAGGCGTTGGCACGCGGGGGAGGAGGTACGGCCCCTG
GCGCTCGAGGCGACGGCGGCGGCGAGAGCAGCGGCGGGGGAAGTCACGAG
AATACCGTCTAG
back to top