mRNA_E-siliculosus-1a_M_contig8.16182.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig8.16182.1 vs. uniprot
Match: D7FNZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNZ3_ECTSI) HSP 1 Score: 733 bits (1893), Expect = 3.060e-265 Identity = 407/429 (94.87%), Postives = 417/429 (97.20%), Query Frame = 1
Query: 1 VGTCTCSCGGENWRSFNIVGRASCVPRAAYETFGYVGLALALMHLAHALYNLTQQRRSEAYWGGRGMVVKMLVDVYREQLSMISIIHAPVIALFFALVLWLPDESVRWSAVALGASQSLSGIGAVRTVQVLIRSADPRLLKKGATVLKVSAALTHPVGRYTSFSAVSIGAVCLVWLMLMARTGQGYKVAAISYILVEGLPILVTVMCSRSMIRIIDYSIAQDAAKQRALGDQSTSSACSAGSGHNRTITVDPKLAGAKKTIISAMFFCITLTSIASTVLIFALTTEYGYDNPIVFLATPLAFGPLIALSFHVQLHSKRNKARRRGQQSPPQSNVNSFGSSTSGVGRGRSGGRKITAASLMATLTGTSXXXXXXXXXXXXXXXXXXXXXMSNRVAPTEFSALEQAKGAQLARPAAPERRGNSVIADTVVE 1287
+GTCTCSCGGENWRSFNIVGRASCVPRAAYETFGYVGLALALMHLAHA+YNL QQRRSEAYWGGR MVVKMLVDVYREQLSMISI+HAPVIALFFALVLWLPDESVRWSAVALGASQSLSGIGAVRTVQVLIRSADPRLLKKGATVLKVSAALTHPVGRYTSFSAVSIGAVCL+WL LMARTGQGYKVAAISY+LVEGLPILVTVMCSRSMIRIIDYSIAQDAAKQRALGDQ+TSSACSAGSGHNRT+TVDPKLAGAKKTIISAMFFCITLT IASTVLIFALTTEYGYDNPIVFLATPLAFGPLIALSFHVQLHSKRNKARRRGQQSPPQSN+NSF SSTSG RGRSGGRKITAASLMATLTGTS XXXXXXXXXXXXXXXXX +SNRVAPT+FSALEQAKGAQLARPAAPERRGNSVIADT VE
Sbjct: 1 MGTCTCSCGGENWRSFNIVGRASCVPRAAYETFGYVGLALALMHLAHAVYNLIQQRRSEAYWGGRRMVVKMLVDVYREQLSMISILHAPVIALFFALVLWLPDESVRWSAVALGASQSLSGIGAVRTVQVLIRSADPRLLKKGATVLKVSAALTHPVGRYTSFSAVSIGAVCLIWLTLMARTGQGYKVAAISYVLVEGLPILVTVMCSRSMIRIIDYSIAQDAAKQRALGDQTTSSACSAGSGHNRTMTVDPKLAGAKKTIISAMFFCITLTGIASTVLIFALTTEYGYDNPIVFLATPLAFGPLIALSFHVQLHSKRNKARRRGQQSPPQSNLNSFCSSTSGDARGRSGGRKITAASLMATLTGTSDXXXXXXXXXXXXXXXXXWKNVSNRVAPTDFSALEQAKGAQLARPAAPERRGNSVIADTAVE 429
BLAST of mRNA_E-siliculosus-1a_M_contig8.16182.1 vs. uniprot
Match: D7FNZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ4_ECTSI) HSP 1 Score: 425 bits (1093), Expect = 6.670e-144 Identity = 254/417 (60.91%), Postives = 293/417 (70.26%), Query Frame = 1
Query: 1 VGTCTCSCGGENWRSFNIVGRASCVPRAAYETFGYVGLALALMHLAHALYNLTQQRRSEAYWGGRGMVVKMLVDVYREQLSMISIIHAPVIALFFALVLWLPDESVRWSAVALGASQSLSGIGAVRTVQVLIRSADPRLLKKGATVLKVSAALTHPVGRYTSFSAVSIGAVCLVWLMLMARTGQGYKVAAISYILVEGLPILVTVMCSRSMIRIIDYSIAQDAAKQRALGDQSTSSACSAGSGHNRTITVDPKLAGAKKTIISAMFFCITLTSIASTVLIFALTTEYGYDNPIVFLATPLAFGPLIALSFHVQLHSKRNKARRRGQQSPPQSNVNSFGSSTSGVGRGRSGGRKITAASLMATLTGTSXXXXXXXXXXXXXXXXXXXXXMSNRVAPTEFSALEQAKGAQLARPAAPER 1251
VGTCTCSCG ENWR+FNIVG ASCVP A +E FG VGLAL+L+HL HA YNL QQRR EA RGM V+M VDVYREQLSMI++IHA VI L+FAL LWLPDESVRWSAVALG S LSGIGAV TVQVLIRS DPRLLK A +LK SAAL HPVGR +FS+VSIGAV L++L +A TGQGYK+AAI+YI+V L IL+ VMCSRSMI IID S+A+D A Q+A G Q S S S + I DPKLA AK+TI+SA+FFCITLTSIAS LIFALTTEYG DNPIVFLA PLA+GPLIALSFHVQLHSKRNKA R + P Q+ + + G +G G G K + S+ T + S RV PT+ +A E +G Q PA+P +
Sbjct: 5 VGTCTCSCG-ENWRAFNIVGHASCVPWAVFEAFGSVGLALSLVHLVHAAYNLKQQRRCEAMQSDRGMAVRMRVDVYREQLSMITVIHALVIGLYFALGLWLPDESVRWSAVALGVSHILSGIGAVLTVQVLIRSVDPRLLKMDAVILKASAALAHPVGRCLTFSSVSIGAVFLIFLTFIAWTGQGYKIAAIAYIVVTVLRILLIVMCSRSMINIIDGSMARDIASQKAQGAQRGRSVLSGDSTSFKKIKADPKLAAAKRTILSALFFCITLTSIASAFLIFALTTEYGTDNPIVFLALPLAYGPLIALSFHVQLHSKRNKALLR--RVPVQNPIATKGEV---IGFGSGDGFKKASGSVGTTTSAKSGRNNTT----------------GGRVVPTQGTAEEGGEGGQT--PASPAK 397
BLAST of mRNA_E-siliculosus-1a_M_contig8.16182.1 vs. uniprot
Match: A0A6H5KF70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF70_9PHAE) HSP 1 Score: 373 bits (957), Expect = 6.470e-123 Identity = 212/324 (65.43%), Postives = 238/324 (73.46%), Query Frame = 1
Query: 1 VGTCTCSCGGENWRSFNIVGRASCVPRAAYETFGYVGLALALMHLAHALYNLTQQRRSEAYWGGRGMVVKMLVDVYREQLSMISIIHAPVIALFFALVLWLPDESVRWSAVALGASQSLSGIGAVRTVQVLIRSADPRLLKKGATVLKVSAALTHPVGRYTSFSAVSIGAVCLVWLMLMARTGQGYKVAAISYILVEGLPILVTVMCSRSMIRIIDYSIAQDAAKQRALGDQSTSSACSAGSGHNRTITVDPKLAGAKKTIISAMFFCITLTSIASTVLIFALTTEYGYDNPIVFLATPLAFGPLIALSFHVQLHSKRNKARRR 972
VGTCTCSCG ENWR+FNIVG ASCVP A +E FG GLA +L+HL HA +NL QQ + RGM V+MLVDVYREQLSMI++IHAPVI L+FA LWLPDE VRWSAVALG S LSGIGAV TVQVL SAAL HPVGR +F +VSIGAV L++L L+A TGQGYK+AAI+YI+V L IL+ VMCSRSMI IID S+ +D A QRA S S S + I DPKLA AK+TI+SA+FFCITLTSIAS VLIFALTTEYG +NPIVFLA PLAFGPLIALSFHVQLHSKRNK R
Sbjct: 5 VGTCTCSCG-ENWRAFNIVGHASCVPCAVFEAFGSGGLAFSLVHLVHAAHNLKQQVGDLSE---RGMAVRMLVDVYREQLSMITVIHAPVIGLYFAFGLWLPDEGVRWSAVALGVSHILSGIGAVLTVQVLXXXXXXXXXXXXXXXXXASAALAHPVGRCLTFFSVSIGAVFLIFLTLIASTGQGYKIAAIAYIVVTVLRILLIVMCSRSMINIIDGSMERDIASQRAQDAHSGGSVLGGDSTSAKKIKADPKLAAAKRTILSALFFCITLTSIASAVLIFALTTEYGNNNPIVFLALPLAFGPLIALSFHVQLHSKRNKVLLR 324 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig8.16182.1 >prot_E-siliculosus-1a_M_contig8.16182.1 ID=prot_E-siliculosus-1a_M_contig8.16182.1|Name=mRNA_E-siliculosus-1a_M_contig8.16182.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=430bp VGTCTCSCGGENWRSFNIVGRASCVPRAAYETFGYVGLALALMHLAHALYback to top mRNA from alignment at E-siliculosus-1a_M_contig8:1730854..1732829- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig8.16182.1 ID=mRNA_E-siliculosus-1a_M_contig8.16182.1|Name=mRNA_E-siliculosus-1a_M_contig8.16182.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1976bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1730854..1732829- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:1730854..1732829- >mRNA_E-siliculosus-1a_M_contig8.16182.1 ID=mRNA_E-siliculosus-1a_M_contig8.16182.1|Name=mRNA_E-siliculosus-1a_M_contig8.16182.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2580bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1730854..1732829- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |