mRNA_E-siliculosus-1a_M_contig8.16123.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16123.1
Unique NamemRNA_E-siliculosus-1a_M_contig8.16123.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16123.1 vs. uniprot
Match: D7G7X8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X8_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.210e-35
Identity = 78/116 (67.24%), Postives = 86/116 (74.14%), Query Frame = 1 
Query:  289 MYQTAKASLVAQLKGAYEELQKIGYHGPYCCLQLDLTSIGTDEFCTASVSVVL*VQQKLPMHLNLATKVFRGQHTQATIKVWIEQVRLTIIFDSFVPAVVPSDVYVAATVDQGLNV 636
            MYQTAK SLVAQLK AYEEL+KIGYH P   L   L++ G D      V   L V   LP+HL+LATKVFRGQHTQATIK W+EQ+  T +F S VPAVVPSDVYVAATVDQGLNV
Sbjct:    1 MYQTAKTSLVAQLKEAYEELKKIGYHLPRPVL---LSTAGLDIDWHRRVLHSLGVGDSLPVHLSLATKVFRGQHTQATIKTWLEQLT-TGVFQSIVPAVVPSDVYVAATVDQGLNV 112
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16123.1 vs. uniprot
Match: A0A6H5JJU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU7_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.960e-26
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:  214 MLAEFVPEYAATDLSHPVLDKILSEMYQTAKASLVAQLKGAYEELQKIGYHGPYCCL 384
            MLAEFVPEYAATD SH VL KIL EMYQTAKA LVAQLKGAYEELQKIGYHGP+CCL
Sbjct:    1 MLAEFVPEYAATDTSHQVLKKILLEMYQTAKAYLVAQLKGAYEELQKIGYHGPFCCL 57
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7X8_ECTSI1.210e-3567.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJU7_9PHAE1.960e-2689.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:1086773..1088491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size483
Model size638
Exons4
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16123.1prot_E-siliculosus-1a_M_contig8.16123.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig8 1086773..1087822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936180.6923087-CDS-E-siliculosus-1a_M_contig8:1086772..10868531622936180.6923087-CDS-E-siliculosus-1a_M_contig8:1086772..1086853Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1086773..1086853 -
1696250964.8538547-CDS-E-siliculosus-1a_M_contig8:1086772..10868531696250964.8538547-CDS-E-siliculosus-1a_M_contig8:1086772..1086853Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1086773..1086853 -
1622936180.7115793-CDS-E-siliculosus-1a_M_contig8:1087084..10871911622936180.7115793-CDS-E-siliculosus-1a_M_contig8:1087084..1087191Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1087085..1087191 -
1696250964.8644764-CDS-E-siliculosus-1a_M_contig8:1087084..10871911696250964.8644764-CDS-E-siliculosus-1a_M_contig8:1087084..1087191Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1087085..1087191 -
1622936180.728516-CDS-E-siliculosus-1a_M_contig8:1087527..10878221622936180.728516-CDS-E-siliculosus-1a_M_contig8:1087527..1087822Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1087528..1087822 -
1696250964.8785214-CDS-E-siliculosus-1a_M_contig8:1087527..10878221696250964.8785214-CDS-E-siliculosus-1a_M_contig8:1087527..1087822Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 1087528..1087822 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936180.7423754-UTR-E-siliculosus-1a_M_contig8:1087822..10878951622936180.7423754-UTR-E-siliculosus-1a_M_contig8:1087822..1087895Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1087823..1087895 -
1696250964.9011066-UTR-E-siliculosus-1a_M_contig8:1087822..10878951696250964.9011066-UTR-E-siliculosus-1a_M_contig8:1087822..1087895Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1087823..1087895 -
1622936180.7561522-UTR-E-siliculosus-1a_M_contig8:1088409..10884911622936180.7561522-UTR-E-siliculosus-1a_M_contig8:1088409..1088491Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1088410..1088491 -
1696250964.914346-UTR-E-siliculosus-1a_M_contig8:1088409..10884911696250964.914346-UTR-E-siliculosus-1a_M_contig8:1088409..1088491Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 1088410..1088491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig8.16123.1

>prot_E-siliculosus-1a_M_contig8.16123.1 ID=prot_E-siliculosus-1a_M_contig8.16123.1|Name=mRNA_E-siliculosus-1a_M_contig8.16123.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=161bp
MVCAERTALACPPRPRAQADAGGVCAGVRRYGLITPSVGQDPLGNVPDGE
GFPCRPAQGSLRGAAEDRLPRPVLLSTAGLDIDWHRRVLHSLGVGGSVSP
TKTANAPQPCDQGVPRPAHTSDHQGLDRTGTVDDYFRLVRSRGGAVGRVR
CGHGRPGAQRG
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mRNA from alignment at E-siliculosus-1a_M_contig8:1086773..1088491-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig8.16123.1 ID=mRNA_E-siliculosus-1a_M_contig8.16123.1|Name=mRNA_E-siliculosus-1a_M_contig8.16123.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1719bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1086773..1088491- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCAGCGAGCAACAAATCTACCAAAGCGAAGCAGGAGAGAGGCAAAGC
ATACGCTGCGGCTGCTGGTATGCATAGCCAACGTGAGTGTGTTGTGTGCA
TGTGTGCGCACGTATGCATATGCTACACAGCAGCAGCAGCGTAGTTCGAG
CCTCCACTCTTTTTTTTTTTCGTGGCTGATCTGTGTTTTTTTTTTTTATT
TTTCCAAATACAACACAACGAGTCCATCTCCGTCAGAGAAAAGAGTCAAA
GACAGATTAGCAATTTTTTGTTTTTTCGTTTTTTCCAATACATGTTGTAC
TGCTGTATGGATACGTGCTGCGCAAACGAACACATACGCCTTCACATTGC
TTTGATTTTAGATTTCCCAGAGGGCAAACGGTTTCCTTCCATGTCTTCCC
CAGCTGGTGTTGATTGTCTCTCTCTCGCTCGAAAAGTACTAATACGAAAA
GTACTAATTCGGTTTCTGTTTTCAGGTATTTTTAAATCACAATTTTAAAT
ATTCAAAAAATCAAATAATCAAATAATCGCCGCTTTTCTCCTCGCTCTCT
CTCCCACCCACCCCCCTCTTTGTGTGTGCTCCTTGTCTACTCTCAGCCTT
CTTTCCTGGGCAAAGGAAGATCTCCATCACCCCTCAGCTGAAGGAGCGCC
TGGACCGCCTTTCGGTGATATGGTGTGTGCAGAGCGGACGGCCTTGGCAT
GCCCTCCAAGACCCAGGGCACAAGCTGATGCTGGCGGAGTTTGTGCCGGA
GTACGCCGCTACGGACTTATCACACCCAGTGTTGGACAAGATCCTCTCGG
AAATGTACCAGACGGCGAAGGCTTCCCTTGTCGCCCAGCTCAAGGGAGCC
TACGAGGAGCTGCAGAAGATCGGCTACCACGGCCCGTACTGCTGTCTACA
GCTGGACTTGACATCGATTGGCACCGACGAGTTCTGCACAGCCTCGGTGT
CGGTGGTTCTGTGAGTCCATAACTTGTAGGTTGAGAGCTTGATGTAGTGA
ACAACCCGCCACCCGCACACCCCTCATGGTTGGTTTTCATGCTTCATAAT
ATATTTATTATTTATTATTTTCAAGATTTAGCCTTCTCTTTTATTACTTT
TTAGCATCTCGCGGGGATCGTTCCTCTTAGTTTTCGAAAGAGCGTGTGTG
TTCTGGATGGATGTGTGCATTGATGTTCACAAATATTTGTATATATTATT
TTTTATTTTTCTTGTCTTCCATTTTGAAACCATCGCCAGAAGCACGAACA
CGCTCGTGTATCTTAGTTGTTTCTTTTCGTTTATGTTTTTCGCTGCACAG
GTCCAACAAAAACTGCCAATGCACCTCAACCTTGCGACCAAGGTGTTCCG
AGGCCAGCACACACAAGCGACCATCAAGGTCTGGATCGAACAGGTACGGT
TGACGATGTCTGTTTCGCCCATCGTTCCCAAGCGCCCACCCTGAAGGATG
AGTTATTGTATACAATTTGAAGACAAGTGTGAACTGCATTGGTCGGCAAT
ATGCGTTCTAAAGAGTAGGCTGTGATGTTGCACACGGCTGGAAATACATG
GTGTCGTCACAATCAAACATTGCCATCCTCCTAACACTTCCCATCCTCCC
AACACTTCCCATCCTCCCATCTTGCAGTTGACGACTAGTATTTTCGACTC
GTTCGTTCCCGCGGTGGTGCCGTCGGACGTGTACGTTGCGGCCACGGTCG
ACCAGGGGCTCAACGTGGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:1086773..1088491-

>mRNA_E-siliculosus-1a_M_contig8.16123.1 ID=mRNA_E-siliculosus-1a_M_contig8.16123.1|Name=mRNA_E-siliculosus-1a_M_contig8.16123.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=966bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:1086773..1088491- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTGTGTGCAGAGCGGACGGCCTTGGCATGCCCTCCAAGACCCAGGGC
ACAAGCTGATGCTGGCGGAGTTTGTGCCGGAGTACGCCGCTACGGACTTA
TCACACCCAGTGTTGGACAAGATCCTCTCGGAAATGTACCAGACGGCGAA
GGCTTCCCTTGTCGCCCAGCTCAAGGGAGCCTACGAGGAGCTGCAGAAGA
TCGGCTACCACGGCCCGTACTGCTGTCTACAGCTGGACTTGACATCGATT
GGCACCGACGAGTTCTGCACAGCCTCGGTGTCGGTGGTTCTGTGAATGGT
GTGTGCAGAGCGGACGGCCTTGGCATGCCCTCCAAGACCCAGGGCACAAG
CTGATGCTGGCGGAGTTTGTGCCGGAGTACGCCGCTACGGACTTATCACA
CCCAGTGTTGGACAAGATCCTCTCGGAAATGTACCAGACGGCGAAGGCTT
CCCTTGTCGCCCAGCTCAAGGGAGCCTACGAGGAGCTGCAGAAGATCGGC
TACCACGGCCCGTACTGCTGTCTACAGCTGGACTTGACATCGATTGGCAC
CGACGAGTTCTGCACAGCCTCGGTGTCGGTGGTTCTGTGAGTCCAACAAA
AACTGCCAATGCACCTCAACCTTGCGACCAAGGTGTTCCGAGGCCAGCAC
ACACAAGCGACCATCAAGGTCTGGATCGAACAGGTACGGTTGACGATGTC
CAACAAAAACTGCCAATGCACCTCAACCTTGCGACCAAGGTGTTCCGAGG
CCAGCACACACAAGCGACCATCAAGGTCTGGATCGAACAGGTACGGTTGA
CGATTATTTTCGACTCGTTCGTTCCCGCGGTGGTGCCGTCGGACGTGTAC
GTTGCGGCCACGGTCGACCAGGGGCTCAACGTGGTTATTTTCGACTCGTT
CGTTCCCGCGGTGGTGCCGTCGGACGTGTACGTTGCGGCCACGGTCGACC
AGGGGCTCAACGTGGT
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