mRNA_E-siliculosus-1a_M_contig8.16070.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig8.16070.1
Unique NamemRNA_E-siliculosus-1a_M_contig8.16070.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig8.16070.1 vs. uniprot
Match: D8LQL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQL5_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 1.920e-112
Identity = 169/180 (93.89%), Postives = 171/180 (95.00%), Query Frame = 1 
Query:   88 MAGPDIKWTAGPGPAPLPYSKRAREAMGVTDDDKPWAHPDPPAAESWGFGGGGESDALREGRLRTNLFLIVLSIIFAIWVYRKVVKRDHSPFFHVSPTPSQSEDVKVSEEDMRTAREARLKRFQETKTSYADMMKEAAGGWSPADTVQNDDDGGNSVAAEGQGCSDGLRRRGRGDQATTG 627
            MAGPDIKWTAGPGPAPLPYSKRAREAMGVTDDDKPWAHPDPPAAESWGFGGGGESD L EGRLRTN FLIVLSIIFAIWVYRKVVKRDHSPFFHVSPTP QSEDVKVSE DMRTAREARLKRFQETKTSYADMMKEAAGG  PA+TV+NDDDGGNSVAAEGQG SDGLRRRG GDQATTG
Sbjct:    1 MAGPDIKWTAGPGPAPLPYSKRAREAMGVTDDDKPWAHPDPPAAESWGFGGGGESDTLTEGRLRTNFFLIVLSIIFAIWVYRKVVKRDHSPFFHVSPTPPQSEDVKVSE-DMRTAREARLKRFQETKTSYADMMKEAAGGCPPAETVRNDDDGGNSVAAEGQGYSDGLRRRGGGDQATTG 179
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig8.16070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQL5_ECTSI1.920e-11293.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig8contigE-siliculosus-1a_M_contig8:411829..415439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size543
Model size1106
Exons3
Ec32 orthologEc-10_006120.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorysignal anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig8.16070.1prot_E-siliculosus-1a_M_contig8.16070.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig8 412305..415352 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936161.8094494-UTR-E-siliculosus-1a_M_contig8:411828..4123041622936161.8094494-UTR-E-siliculosus-1a_M_contig8:411828..412304Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 411829..412304 -
1696250955.848319-UTR-E-siliculosus-1a_M_contig8:411828..4123041696250955.848319-UTR-E-siliculosus-1a_M_contig8:411828..412304Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 411829..412304 -
1622936161.907802-UTR-E-siliculosus-1a_M_contig8:415352..4154391622936161.907802-UTR-E-siliculosus-1a_M_contig8:415352..415439Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 415353..415439 -
1696250955.8906817-UTR-E-siliculosus-1a_M_contig8:415352..4154391696250955.8906817-UTR-E-siliculosus-1a_M_contig8:415352..415439Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig8 415353..415439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936161.8223765-CDS-E-siliculosus-1a_M_contig8:412304..4125291622936161.8223765-CDS-E-siliculosus-1a_M_contig8:412304..412529Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 412305..412529 -
1696250955.8583357-CDS-E-siliculosus-1a_M_contig8:412304..4125291696250955.8583357-CDS-E-siliculosus-1a_M_contig8:412304..412529Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 412305..412529 -
1622936161.8391407-CDS-E-siliculosus-1a_M_contig8:413087..4133091622936161.8391407-CDS-E-siliculosus-1a_M_contig8:413087..413309Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 413088..413309 -
1696250955.8686316-CDS-E-siliculosus-1a_M_contig8:413087..4133091696250955.8686316-CDS-E-siliculosus-1a_M_contig8:413087..413309Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 413088..413309 -
1622936161.858301-CDS-E-siliculosus-1a_M_contig8:415256..4153521622936161.858301-CDS-E-siliculosus-1a_M_contig8:415256..415352Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 415257..415352 -
1696250955.881323-CDS-E-siliculosus-1a_M_contig8:415256..4153521696250955.881323-CDS-E-siliculosus-1a_M_contig8:415256..415352Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig8 415257..415352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig8.16070.1

>prot_E-siliculosus-1a_M_contig8.16070.1 ID=prot_E-siliculosus-1a_M_contig8.16070.1|Name=mRNA_E-siliculosus-1a_M_contig8.16070.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=181bp
MAGPDIKWTAGPGPAPLPYSKRAREAMGVTDDDKPWAHPDPPAAESWGFG
GGGESDALREGRLRTNLFLIVLSIIFAIWVYRKVVKRDHSPFFHVSPTPS
QSEDVKVSEEDMRTAREARLKRFQETKTSYADMMKEAAGGWSPADTVQND
DDGGNSVAAEGQGCSDGLRRRGRGDQATTG*
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mRNA from alignment at E-siliculosus-1a_M_contig8:411829..415439-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig8.16070.1 ID=mRNA_E-siliculosus-1a_M_contig8.16070.1|Name=mRNA_E-siliculosus-1a_M_contig8.16070.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=3611bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:411829..415439- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AATTTCCGCTCTGCTCTGCACGTGCCGCGTGCACCCCGGCACCTCGGTAC
TCGGCACCCCAGGCGCTAACTGCTCGTGTCTTGCGCTATGGCTGGTCCGG
ATATCAAGTGGACGGCTGGCCCTGGCCCGGCCCCGCTGCCGTACTCAAAG
CGGGCGAGAGAAGCAATGGGTGTCACCGACGATGTAAGGGCACGTCATTG
TCGAAGCGAAGCAGCGCACTACAGTCTCTGGTGTCGAAAGAGCTTTGTAG
CACGCAGTGCACGCCCAGCGACATTCTGCGGTTGGTTGTGCTGGTGTTGG
TGGTGGTAGCATCTTTCTAGAAGCTTTGCCATCATGCTGTATTTGTATGT
ACTCATCACTCATCGCCAATTTTTGTACAGCGTGCAGCAGGATCGCACGG
TGGAGGTATGCAGCGAAGATAGTAGAACACAGCAGCTGATCCGTACGTTC
TCGAGCAGAGCATCATGGGCCTCGAAGTTTGGTAATCTCCTCGACATGCT
TGCCCTTGAGGTCTTGACGTGTTTACGCGTCAACTTGGGGAGCTGGGAAT
TCCGTTTTTGAAGAACGTTTCCAAGATTCTGTATCTACCGCAGATCAGAT
GTTGTTAGACGGCATTTCGTACGGTCAGGCCAGTTGTTATACAATTGTAG
GTAGATTTTCCCAGATCGGAATCCGGGGGGTCGACAGAAAATGGTAAGCC
ACCCCCCAAAAAGAGGAGGTCTGCGTACTGGATAGCAAGCAGAGTCCACC
ACGGCACTTCGTTACTTAGTCCTCGCCTCACAGAGACCTATTCCTGATCA
AACCACCGAGGCTGTACAGTCCACTGCTGCGAGCTTTGCGGAGCCAAGTT
TAGGCAGCTAGAATGGAGTGTGCACAGAGTAGCCTCGGATATGAAAGCAA
ATTCGTAATTCCCAGATTGGAATTTCAACCAATTCCAGTTTGGAATTCAT
GAGGAATTCCCACGCAGGATCGTCCAATATTAATATTCCCAGATTGGAAT
CCTATTTTTCCAAGCATGATGAACACACACTCCACCCCAGCTCCCCAAAC
TTGGCTCCGAGAGGCTCACAGCAATGTAGCCTACAGCCTCGAAGGTTTGA
TCGCAAACGGGTTTCTGTGAGGCGAGTACTGATTGACAAAGCGCTTTGGT
GTGCTTTTCCCGACAAAGCGCTTTGGTGTGCTTTTCCCGCCAAGTGCGCA
GAACTCCTGCTGACGCATGGGAGTTTGGATGTAATAGGCGTAATTCCGGG
ATTCCCAGTTGGGAATTCTTTTCATAACAACTGGCCTCACTAGTCTATGC
ATACAGTTAGCGCCCGCAATTAAAAAATAGTTTCTAAGAAATAGAGGCTC
ACTTTTCCACTAAAATAAGAAAATAGGATGATAAACATAGCTCAGTCTGG
GTCACACAGTAAGAAATGTCTCAATAAGAAACAGCGGCGACCCCCTCCCT
ACTGCATAAGAAATGAGGGGTTACGAGGGAGTGTGTCGAATAAGAAACAC
CCCACAGCTCCTCCTATCTCTCGCTCTTTCCCCCCTCTCCCACTACCCCC
CCCCCCTCCCATAGTGCATTATTTGTTGTACGACGAGGGGGGAGTGTGTT
TGTTTTGCGGCGCCCCCTCCGGCCCCCTGCCGGCTCTGGTGCTCTCTGGC
GCTCCGGCTCTGGCACAGCACACCAGACAGACTGCTAACCACGATATGCT
GTCTGCTGTACGGTTGTGATGGTGCTCTCCGCCAGCTCTCGTGAGGGCAA
ATCAGTTGTTTATTTTGAACGTTGTGTATTGTAGTAAGCAAGCAGAGAGA
AAAAGAAATCGCCGATATAAAAAATTCAGCAGGGTTTGGCGGCACGAAAA
AATAAGAAACTTGATATACTTGAACGACATACGCTGAGTTTATAGCCAAC
AATAAGAATTCGAGGCGGGACCTGAAATAAACGTTTCTTAATCACTCTCT
TTCCTTCCATCGGTTTTCAGACTGCATCACAAATAGTCAGAGATTTACTC
CATTACTACTGCTGTAAACGACTCTACGTTCTTGCGCCTAGGAACAATCT
GCCAGTGTGTTGTATAGTGCCACAACCGCTGCTGCGAGTTATGCACCATG
ATCACGTGCGTCGTCGCACCTCATGCGCAGGATAAACCATGGGCGCACCC
AGATCCACCGGCGGCAGAAAGCTGGGGGTTCGGCGGCGGCGGTGAGAGTG
ACGCTCTCAGAGAGGGAAGGCTTCGGACCAACTTGTTCCTGATCGTTCTC
TCGATCATCTTCGCTATCTGGGTATACCGAAAGGTCGTGAAGAGAGATCA
CTCTCCCTTTTTCCACGTCTCCCCAACACCGTCGCAGTCGGAGGACGTGA
AGGTGAGAGGTCTGGGAGGACGTAGGTTGTCCACGAGATCGTTCACAAGG
TGAACAGCGAGCGATAGATGCGGCGTTATGCCTCTTCTTTTCTGAGTTGA
GACGAAACTCTCTTCATTTTTGGGAGGCGCTTCCTGACAAGGAAAATTTT
GTATGTCTCTCGCTCTCTCTGATTGTAGAGGCGAGAGGCGTTCTTGATAA
AAATGGTGAAAATGTAGAATTGTTGGTGCGTCTGGTTGTTGAAGCGTATC
CCTGCTATGGCATATCAGGGTCAGTGAACACCTTGCAAAGGCAGACGCCC
ACCTTCGCCGATCTCCGCCAATCGTAGGGCTCAGGCAACCGAGGTTTGCA
GTTTTGCCAAAACTCTACAAGATCTTCCCAAGAATGTGGGGTTGCGGCTG
GCTGTCCTTGTTTCTAGAAAAAATCGGCCGCAAAAGCCCATTGGCCCAGA
GGTATGCATACGAGCATGTGTTTGTATTTCAATCTGGCCACCACCATCCA
TTAATCGCATCTACACTCGGTCGATTCCACCCACCCACATCAAACATCGG
TATGCGGCAGGTGTCAGAGGAGGACATGCGAACAGCGAGAGAGGCCAGAC
TGAAACGGTTCCAGGAAACGAAAACCTCGTACGCTGACATGATGAAGGAA
GCGGCTGGGGGATGGTCTCCTGCCGATACCGTTCAAAACGATGATGATGG
CGGGAATTCTGTGGCGGCAGAAGGGCAGGGATGTTCGGATGGGCTGCGAC
GTAGGGGACGGGGCGACCAAGCAACAACAGGCTGAGAGTGTCCATGGAAA
TCCCTCCGAGCTCTTTGGTATTGTACACGTAGTGTAGAGTATGCGGTATC
GTATGGGCGGCTTCGGCAACAAGCGGAGAGAATCCAGAATACAACCATTC
GAGACTGGTTATCTTTATGTCCACAGGCAGGGTAATGATGCAAACGCCAC
GTGGCGTTTGGCGTTTGCTCACTTTCTGTAGCTTTGCGTCGCGCCAACTG
GCCCTGTATAGCTCTAAACACGCACACGCCGTCCTACAAGTATTAGTATT
GCTGGCAACTTTCTTTCCAATAAGTTGTTCACCTCTGAGAGGTCTATCCC
GAGGGGGTTGCACAGCAGTGGAGAGACGTTCACACGCCAATTGACCGGGT
TGTGGATTGGTTGTGTGCCTTGACGACCGAGAGGGATGACACTGATTCGC
ATCCTCTTCTACGATGGTTAAAAAATCAACCAAAGATGCCTGCCATTGGT
ACGGTAATTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig8:411829..415439-

>mRNA_E-siliculosus-1a_M_contig8.16070.1 ID=mRNA_E-siliculosus-1a_M_contig8.16070.1|Name=mRNA_E-siliculosus-1a_M_contig8.16070.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1086bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig8:411829..415439- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCTGGTCCGGATATCAAGTGGACGGCTGGCCCTGGCCCGGCCCCGCT
GCCGTACTCAAAGCGGGCGAGAGAAGCAATGGGTGTCACCGACGATATGG
CTGGTCCGGATATCAAGTGGACGGCTGGCCCTGGCCCGGCCCCGCTGCCG
TACTCAAAGCGGGCGAGAGAAGCAATGGGTGTCACCGACGATGATAAACC
ATGGGCGCACCCAGATCCACCGGCGGCAGAAAGCTGGGGGTTCGGCGGCG
GCGGTGAGAGTGACGCTCTCAGAGAGGGAAGGCTTCGGACCAACTTGTTC
CTGATCGTTCTCTCGATCATCTTCGCTATCTGGGTATACCGAAAGGTCGT
GAAGAGAGATCACTCTCCCTTTTTCCACGTCTCCCCAACACCGTCGCAGT
CGGAGGACGTGAAGGATAAACCATGGGCGCACCCAGATCCACCGGCGGCA
GAAAGCTGGGGGTTCGGCGGCGGCGGTGAGAGTGACGCTCTCAGAGAGGG
AAGGCTTCGGACCAACTTGTTCCTGATCGTTCTCTCGATCATCTTCGCTA
TCTGGGTATACCGAAAGGTCGTGAAGAGAGATCACTCTCCCTTTTTCCAC
GTCTCCCCAACACCGTCGCAGTCGGAGGACGTGAAGGTGTCAGAGGAGGA
CATGCGAACAGCGAGAGAGGCCAGACTGAAACGGTTCCAGGAAACGAAAA
CCTCGTACGCTGACATGATGAAGGAAGCGGCTGGGGGATGGTCTCCTGCC
GATACCGTTCAAAACGATGATGATGGCGGGAATTCTGTGGCGGCAGAAGG
GCAGGGATGTTCGGATGGGCTGCGACGTAGGGGACGGGGCGACCAAGCAA
CAACAGGCTGAGTGTCAGAGGAGGACATGCGAACAGCGAGAGAGGCCAGA
CTGAAACGGTTCCAGGAAACGAAAACCTCGTACGCTGACATGATGAAGGA
AGCGGCTGGGGGATGGTCTCCTGCCGATACCGTTCAAAACGATGATGATG
GCGGGAATTCTGTGGCGGCAGAAGGGCAGGGATGTTCGGATGGGCTGCGA
CGTAGGGGACGGGGCGACCAAGCAACAACAGGCTGA
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