mRNA_E-siliculosus-1a_M_contig77.15846.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig77.15846.1
Unique NamemRNA_E-siliculosus-1a_M_contig77.15846.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig77.15846.1 vs. uniprot
Match: A0A6H5JSS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSS0_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 7.440e-73
Identity = 236/478 (49.37%), Postives = 243/478 (50.84%), Query Frame = 1 
Query:  616 VSASPKNYGRHRHPAEGAPAIVDSPGGGTAGSGRGGSRAGAGGFLRLVRDSGNSSAATLSTSGRGEEXXXXXXXXXXXXXXXXXXXXXXXXDG----ARDSEVEQELHQREEEEGRQHREEGRGVGHDGHRRKHEEGEEEAITRPTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRLLRRVELRTPAE----------------------------------------------------------------------------EEEAEAIRKSQELTSSYNEPLRESKSTASPSNYRHVSGSGDTLVGRTREGKDPDHHHPGVAAGGVRATERTGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMEAGREISDIDRRLGELHEFLKRAKEGGGIXXXXXXXXXXXXXXEVGAEGVTEASA 1809
            VSASPKNYGRHRHPAEGAPAIVDSPG GT GSGRGGSRAG GGFLRLVRDSGNSSAAT S SGRGEE          XX     XXXXXXX      ARDSEVE ELHQREEEEGRQH E GR  G DG RRK  EGEEEAITRPTRG       X                                        L   +E++ P                                                                               +   A R+SQELTSSYN PLRESKSTASPSN RHVSGSG  LVGRTREG DP+HHHPGVAAGGVRATERTGQ               XXXXXXXXXXXXXXX                            XXXXX EMEAGREISDIDRRLGELHEFLKRAKEGGG+              EVGAE   EASA
Sbjct:  221 VSASPKNYGRHRHPAEGAPAIVDSPGAGTPGSGRGGSRAGVGGFLRLVRDSGNSSAATTSMSGRGEEDVTSGGWRRRXXPRDRWXXXXXXXXXXXXXARDSEVEHELHQREEEEGRQHCE-GRRAGDDGRRRK--EGEEEAITRPTRGGGTVRNGXGTAGAGWGGLAGGLVLLVHEVFGGVVGDAAASEVTQC---LQLSLEVKAPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPRKIPPAPRQSQELTSSYNAPLRESKSTASPSNRRHVSGSGGILVGRTREGNDPNHHHPGVAAGGVRATERTGQ------GEGQRRQAFXXXXXXXXXXXXXXXPRLRGAAIDAPADDGQDPQEPPSFAAVDXXXXXGEMEAGREISDIDRRLGELHEFLKRAKEGGGVGAGLPLALPPAPTLEVGAEAAAEASA 686
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig77.15846.1 vs. uniprot
Match: D7G256_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G256_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 2.310e-70
Identity = 306/403 (75.93%), Postives = 314/403 (77.92%), Query Frame = 1 
Query:  640 GRHRHPAEGAPAIVDSPGGGTAGSGRGGSRAGAGGFLRLVRDSGNSSAATLSTSGRGEEXXXXXXXXXXXXXXXXXXXXXXXXDGA---------RDSEVEQELHQREEEEGRQHREEGRGVGHDGHRRKHEEGEEEAITRPTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRLLRRVELRTPAEEEEAEAIRKSQELTSSYNEPLRESKSTASPSNYRHVSGSGDTLVGRTREGKDPDHHHPGVAAGGVRATERTGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMEAGREISDIDRRLGELHEFLKRAKEGGGIXXXXXXXXXXXXXXEVGAEGVTEASASASS 1821
            GR     EGAPAIVDSPGGGT GSGRGGSRAGAGGFLRLVRDSGNSSAATLSTSGRGEE         XXXXX     XXXXX            RDS VEQ LH+REEEEG QH                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TRLLRRVELRTPAEEEEAEA+RKSQELTSSYN P+RESKS ASP NYRHVSGSG  LVGR R G DPDHH+PGVAAGGVRATERTGQE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       EMEAGREISDIDRRLGELHEFLKRAKEGGG+   XXXXXXXXXX EVGAE  TEASAS+++
Sbjct:  146 GRPEVGIEGAPAIVDSPGGGTPGSGRGGSRAGAGGFLRLVRDSGNSSAATLSTSGRGEEDVAGGGWRRXXXXXDRWDDXXXXXXXXXXXXXXXXXRDSGVEQGLHRREEEEGWQHX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATRLLRRVELRTPAEEEEAEAVRKSQELTSSYNAPVRESKSAASPRNYRHVSGSGGALVGRMRGGNDPDHHYPGVAAGGVRATERTGQEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDG-----EMEAGREISDIDRRLGELHEFLKRAKEGGGVGAAXXXXXXXXXXSEVGAEAATEASASSAA 541
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig77.15846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSS0_9PHAE7.440e-7349.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G256_ECTSI2.310e-7075.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig77contigE-siliculosus-1a_M_contig77:588020..593884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size1833
Model size1834
Exons7
Hectar predicted targeting categoryother localisation
Ec32 orthologEc-08_004810.1
Ec32 ortholog descriptionhypothetical protein
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936104.013305-CDS-E-siliculosus-1a_M_contig77:588019..5881201622936104.013305-CDS-E-siliculosus-1a_M_contig77:588019..588120Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig77 588020..588120 +
1696250931.072022-CDS-E-siliculosus-1a_M_contig77:588019..5881201696250931.072022-CDS-E-siliculosus-1a_M_contig77:588019..588120Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig77 588020..588120 +
1622936104.0321438-CDS-E-siliculosus-1a_M_contig77:588446..5885681622936104.0321438-CDS-E-siliculosus-1a_M_contig77:588446..588568Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig77 588447..588568 +
1696250931.083584-CDS-E-siliculosus-1a_M_contig77:588446..5885681696250931.083584-CDS-E-siliculosus-1a_M_contig77:588446..588568Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig77 588447..588568 +
1622936104.0503206-CDS-E-siliculosus-1a_M_contig77:589276..5893881622936104.0503206-CDS-E-siliculosus-1a_M_contig77:589276..589388Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig77 589277..589388 +
1696250931.0942817-CDS-E-siliculosus-1a_M_contig77:589276..5893881696250931.0942817-CDS-E-siliculosus-1a_M_contig77:589276..589388Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig77 589277..589388 +
1622936104.0671117-CDS-E-siliculosus-1a_M_contig77:590231..5904831622936104.0671117-CDS-E-siliculosus-1a_M_contig77:590231..590483Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig77 590232..590483 +
1696250931.1046917-CDS-E-siliculosus-1a_M_contig77:590231..5904831696250931.1046917-CDS-E-siliculosus-1a_M_contig77:590231..590483Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig77 590232..590483 +
1622936104.0824244-CDS-E-siliculosus-1a_M_contig77:591085..5912591622936104.0824244-CDS-E-siliculosus-1a_M_contig77:591085..591259Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig77 591086..591259 +
1696250931.1164277-CDS-E-siliculosus-1a_M_contig77:591085..5912591696250931.1164277-CDS-E-siliculosus-1a_M_contig77:591085..591259Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig77 591086..591259 +
1622936104.109107-CDS-E-siliculosus-1a_M_contig77:591706..5921991622936104.109107-CDS-E-siliculosus-1a_M_contig77:591706..592199Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig77 591707..592199 +
1696250931.134757-CDS-E-siliculosus-1a_M_contig77:591706..5921991696250931.134757-CDS-E-siliculosus-1a_M_contig77:591706..592199Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig77 591707..592199 +
1622936104.1260781-CDS-E-siliculosus-1a_M_contig77:593305..5938841622936104.1260781-CDS-E-siliculosus-1a_M_contig77:593305..593884Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig77 593306..593884 +
1696250931.1461346-CDS-E-siliculosus-1a_M_contig77:593305..5938841696250931.1461346-CDS-E-siliculosus-1a_M_contig77:593305..593884Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig77 593306..593884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig77.15846.1prot_E-siliculosus-1a_M_contig77.15846.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig77 588020..593884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig77.15846.1

>prot_E-siliculosus-1a_M_contig77.15846.1 ID=prot_E-siliculosus-1a_M_contig77.15846.1|Name=mRNA_E-siliculosus-1a_M_contig77.15846.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=611bp
RGRSRSNGSSRRGGATPAFDPTAYQRERQAKLQRLEEDRRRRERREIGYS
PARNSGRDSWIGSSRDRGSGPSLAGVAAIAPRGRTTARGGGSSGYASAGS
QASRASRGSSTSASHSGGGGGGGGGGGSGGIGGGTKYSASGRFEATPNGS
RRAGAGRPSSRADSRGRWGASPSRGGGGRYGGGGSRGDRATGGRDSPRTL
RQPRKVSASPKNYGRHRHPAEGAPAIVDSPGGGTAGSGRGGSRAGAGGFL
RLVRDSGNSSAATLSTSGRGEEDVAGGGWRRRRRPRDRWDDDDGGGDGAR
DSEVEQELHQREEEEGRQHREEGRGVGHDGHRRKHEEGEEEAITRPTRGG
GTVRKGGGRAGTGWGGLASSSGAGGVGGGGGSCSSSMRSSAASSATRLLR
RVELRTPAEEEEAEAIRKSQELTSSYNEPLRESKSTASPSNYRHVSGSGD
TLVGRTREGKDPDHHHPGVAAGGVRATERTGQEEGRRRQAFFSASSSSSI
QQQQEEPTLRGAASDAPAGGGGGQDPPEPPSFAAVDSGGGGGGGGGEMEA
GREISDIDRRLGELHEFLKRAKEGGGIGAGLPLPLPPPPPPEVGAEGVTE
ASASASSPGV*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig77:588020..593884+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig77.15846.1 ID=mRNA_E-siliculosus-1a_M_contig77.15846.1|Name=mRNA_E-siliculosus-1a_M_contig77.15846.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5865bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig77:588020..593884+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGGGGTAGGTCGAGGTCGAACGGCAGCAGCAGAAGGGGAGGCGCAACCCC
GGCTTTCGACCCGACGGCGTACCAGAGAGAACGACAGGCAAAGCTGCAGA
GGTAAGTGCGCGTGCGCTAGAGACAAAGATCGTGAGAGAGAGGGAGAGAG
AGAGAGAGAGAGAGAGAGGGGGGGGCAGAGGCTTAGAGAAAGAGGGAATG
GACGAGCGAGAGAAAGAAAGACAGAGGCGCGCATAGACAGAGATGGAGAT
ATAGACAAAGAGAGAGAGACAGCGAGAGAGACAGAGACATAGACTGACAG
AGACAGAGACAGAAGGACACAGAGAGAGAGAGAGTAGCATGACACCATGT
TTGTGTCAAACTCCTGCGTGGTTTTCGAGCAAAGAATGCGCGCATTGTCT
CTGACCGTGTCGTGTCGATTGATTCAGGTTGGAAGAAGACCGTCGGAGAC
GGGAGCGGAGGGAGATCGGGTACTCTCCCGCGAGAAATTCCGGGCGAGAT
TCTTGGATCGGGTCGTCTAGAGATCGAGGGTCGGGACCGTCCCTAGCAGG
CAAGAAACTATTTGGTACACACGGGTCTGGAAGGATGACAACAGCCGTGG
TGGTTTCTGTCGTTGCTGTCGTTGTTGTTGTGGTTGTTTTTGTTCTTCTT
CTTGTTGTATTTAGTTGTTGTGGTTGTGGTTGTTGTTTTTCCACTTGTTG
TAGGTGTCGTCGTTGTTGTGGTTGTGATAGTTGTGGTTGTTGCTGTTGGC
CATTGCTGTTGTTGAACCAGTGAGTTCCGGCCCGGCGGCTACAAGGCATG
TAGAGAACCGAAACAATGTTGTAACATAAAAAAAAAAGCACACGTTCGAC
CCTTCTCTTTTCACTGCTTGCGGCAAGGCCGTGCCACGAAACGCACGCCA
ATGCAGCCAAACACCAAGGGTGCCTGTCTCGTGGATGTCGCGTCGTGGGT
GTCACGGTTGTGGTGGTCTTGACAACTCTCTCTGTCATCGCCTGCTTGTA
AAGACCACCGTGTCTCTCCTTGCTGACTTCGGACAAGAGCGCCTTCGTGG
GTAGACACGTTGTTAGTCGTCATGGATGTCTCTCTGCCACTTTCTCTGTC
TCCGTCTCTGTGTGTCTGTCTGTCTGTGTCTCTCCCTCTCTCTTTGTCTC
CATATCTCTCTCTCTCTCTAATTCTTTCTCTCTAATCCTCTCCCTCCCTC
TCTCCCTCCCCCCCCGCGCGCTCTTCTCTATCCTTGCACCCATCCGGGCT
GAAACAGGCGTCGCCGCCATCGCACCACGAGGAAGGACGACCGCGCGCGG
CGGCGGGAGCTCCGGCTACGCCTCTGCAGGGTCCCAGGCTTCGCGGGCGT
CCAGGGGCTCTTCGACTAGGTGCGAGGGCGTGCACAACTGTCGGGGGGGG
TAACCAATAGTCGTGCATGCCGTAGTCGTTAGACCGTTGACCTCGCATCC
CTACAAAGCTTGGAGATATGCAGGGGGGCACCACAATGTGATTGATGCCG
GCGAATGGGGGTGGGGTGCTGTTGCCGTCGTTTTCGCCACGTTTCCCCGA
ATGGCGCGATGTGTGTCTCGCCGATACGTGTGCACTACGTGCGATATCGA
GATTGTTCGTACTCAAATAAGAGACCGAACTCGTTCCTGTATATGTTTTC
ATTGTTGTAAAAGAAAGAAAATGTTGTGAACAATGAAAGTCCGAGAGAGC
AGGAGTTAAAAAAAGAGCCAACCGGTCACCATCTCCGTCAAGGAGTCTTG
TCCGTATCCTTAACAAGCACAAAGAGACAGGCAGAGAGAAAAAAGCACCC
ACACATGCGGACAAGTGTGTCGCGAAGTTGATGTCCAAACCCAAACAGCA
AGCGGGGAATGAGTAACCCCTCAACGCAGTCCAATTTCTCCTCGGAAATA
ATACGTTTCTTCAACACCGATCATCACCCCCGCCGCCGCCGCCGCCGCCG
CCGCCCCAACTTGATACAAATCACTTCCCCATGTGACGGAAAAAAACAGG
TCGCGAATATCACTCCTGTCCGCTGATCGATCAGACGCCTCTTCGCGGTC
TACACGGTCCCGCCACCGACGCCCGACAGCAGCAGCAGCAGCAGCAGCAG
CAGCATCCCGTCGTCGTTCTCCATCGCCGGCAGCGGCGGCCTCTTCTGCC
GCAACCGCCGCCGCTAATCGCCGCCGCTCCTCAAACGCCGCCTCATCGGC
CACCGCCTCTAGTGCTTCCCATAGCGGCGGCGGCGGCGGTGGAGGCGGCG
GCGGTGGTAGTGGCGGTATTGGCGGCGGTACGAAATACTCAGCCTCCGGT
AGATTCGAAGCAACCCCGAACGGTAGCCGCAGGGCGGGGGCAGGGCGGCC
CTCTTCTCGGGCAGACAGCAGGGGGAGGTGGGGAGCATCCCCTTCTAGAG
GTGGCGGCGGGCGGTATGGCGGTGGCGGCTCTAGAGGTGACAGGGCGACC
GGAGGTCGGGATAGGTGAGTTTTTTTTTTTTTGTGCGGCAGTTTCTTCGT
AGGCCGCAATAAAAACAAGGTTGACTCTCAAGACCTTTGTAGGATTCACG
AGTGATAAAAGACATCGGGGAGGCAAGAGAGGGGCCCCGCGCATCATGTC
CATCATACCCTCGAGGTCCCGTGGGTCAGTACTCCGCCGAGCACCCCAAA
CATCAGTCGGATCGTGTAGGTTTAGTTTGGCGCGTGGTCTGGCTCTCGAC
ATGTTCTGCCTAGGGGTGTATTCTTGGCGCGGGTGTGTTTTGTGTTTGCC
TGTTTTTCGTTCTCGTACTTTTTTTGGGGGGGTTGTGTCTTGCCCGGCGC
AGCCACACGACACCACTCTGGTCGCAGATGTCGTGTTCCTCCATCTGTTT
CGCTCTTCATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTCTCTGTCT
CTCTCGCTCTCTCTCTCGCTCTCTCTCTCGGTCTCCCTCTTTCTCTCTCT
CTCCCCCTTGCCCTCTACGCATCTCTGTCCTTTTCTCTCCATCTCTCCCT
CTCCCCATCTCTCGCTAACCTTGAAATCTTCCCGGCTCTCTGTTCGTTCG
TCTCCCGACACAGCAGCCCTCGAACATTACGACAACCGAGGAAGGTCTCC
GCCTCTCCCAAAAACTACGGTCGCCACCGCCACCCCGCAGAGGGGGCCCC
GGCGATTGTTGACAGTCCCGGGGGAGGTACCGCCGGTAGTGGGAGGGGCG
GCAGCCGAGCCGGCGCAGGGGGCTTCCTAAGACTAGTCAGGTGAGCCTCT
CAAAGGAGTCCGCCTCACAAGCCCCCCGCTACCCCGGAGATAAGACCACC
CCCTTTGGGGGGGAATTAGAAAACGCTTGTTCGTAAGGGGGATCCCCACC
ATATAGGACAGACCATGAGGTAGCTCTCACCTATGTAGGTCTTGCAGGTC
ACCACGGACCAAACATAACACAGGTCACCTACAATGTGGTCCTTCAGATC
GCCATGGAGCAAGCATTCCCCGATCACCCATGCCTTTCAGATCACCTCGG
GCCAACAAACCCCTATTGCCTTATTTTTTCCTGAAATCAACCCCCCCCGC
TTCATCGCAAAAACGTTCAACGCTGCAGGGACTCCGGCAATTCCTCCGCC
GCGACTACGTCCGTACCACCCCGCCACTTAAAACAACTTGTGCTGAACCC
TCCCCCCTCCCCCCCCCCCTCATATTCAACGCCGCAGGGACTCCGGCAAT
TCCTCCGCCGCGACTTTGTCGACGTCTGGCCGAGGCGAGGAGGACGTTGC
CGGCGGGGGGTGGAGACGGCGCCGGCGCCCGCGAGATCGGTGGGACGACG
ACGATGGAGGCGGTGACGGTGCCCGCGACTCTGAGGTAGAGCAGGAGCTG
CACCAGCGGGAAGAGGAAGAAGGGCGGCAACACCGCGAAGAAGGTCGTGG
TGTTGGTCATGACGGGCATCGACGCAAGCACGAGGAGGGAGAAGAGGAAG
CAATAACAAGGCCTACTCGGGGGGGCGGGACTGTCAGAAAAGGAGGAGGA
CGGGCAGGGACGGGATGGGGGGGGCTCGCGAGCAGCTCCGGGGCGGGGGG
GGTGGGGGGGGGGGGGGGCTCGTGCTCCTCGTCCATGAGGTCTTCGGCGG
CGTCGTCGGCGACGCGGCTGCTTCGGAGGGTGGAGCTAAGAACGCCTGCT
GAGGAGGAGGAGGCAGAGGCTATCCGGAAGGTAAGTTTTGGCAGTCGAGA
GTCGGGGGAACTCGCATCATACTTTTGCGCGATTGTTTGTGGCAAGTCGT
TTTTATCAAGTTGCGATGTGTGTAATGAGGAATAGAGGTGGGGGCGAATT
TGCGAGAGTGGGGGGAACTCACGTCGTATGTACGCGCATACATGTTTGTA
CTGGCGGGATTGTTTGTGGCATTTTTTTTATCAAGTTGTGATGTGTAGAG
AGGCTTGGGGACTGCGTGTGTCGTGGTAGCGGAAGAAAACACCCGCACAC
GATTACGATTGCTGCTGTGTACTTGAACAGATTCTCTCGATTATTCCACC
ACCACCACCACCACCACCACCACCAAGAGCACGTTTGATCGTGAACAAAA
CGTTTACAGCAGGACGTGCCTTCAGATGAAAAAAAGAAGTATTTTCAGCG
GTAACCCCCGCGCCTTCCCCCTAAATCCGATCCCCGTGACCGGTCCCGGC
CCCCCCCCCCCCCCCCCCGGTGTCTGCCATCGGGGTTGGGTTTTCGTCGC
TTGGCAACGACGTTGTAAAACAAGCCGCCCCCCCCGGTGTTTGCCATCGG
GATTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAAGAAGCCAATTCAC
TTCGTGAACTCGGCCACCAGGTTCCCGTTTTTTTTTTCCTCTGGTTTTTT
TTTTGGCGGTAACCATAATGGTGGTCGAGTAGATCATGTTGTGCGGGGTG
GAGAACTCTCACTCCGCGCAAGGGGGATGATCGCACCACGTTGTGATAAA
ATGGTCAAGCATCCTCGAGGCAGTTACACAGTGCTTACAACTGTCTCCGA
AAGTGAAAGCACCAGAAAGTAAATTAAGTCATACGCAGCTGTCATCCGTA
CGCAAGGAAGTAAGCACAAGATGCCGAACACCCTTAGCAGGATGCAGCTC
ACCCTTCATGCGACTCGCCGAATACCTCACGGCGCTTCGCGCTTGGTGAT
GTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTGTA
GGGATGCGAGGTCAATGGTCTAACGACTACGGCATGCACGACTATGAGTA
CACCCCCCCCGCAAAATTCCTCCGTCGCCACGCCAGTCGCAGGAGCTGAC
CTCGTCGTACAACGAACCTCTGCGAGAAAGCAAGAGCACTGCAAGCCCCA
GCAACTACCGGCACGTGAGCGGCAGTGGCGATACTCTGGTCGGACGAACG
AGAGAAGGAAAGGACCCTGACCATCATCACCCCGGGGTGGCTGCAGGAGG
GGTCCGAGCGACCGAAAGAACGGGGCAAGAAGAAGGGCGGCGGCGGCAAG
CCTTCTTTTCGGCGTCGTCGTCGTCTTCGATACAGCAACAGCAAGAAGAG
CCTACATTACGCGGTGCTGCTAGCGACGCCCCCGCAGGCGGCGGCGGCGG
CCAAGACCCCCCGGAGCCGCCGAGCTTCGCCGCCGTCGACAGCGGTGGCG
GCGGCGGCGGCGGCGGCGGTGAGATGGAGGCCGGGCGGGAGATCTCCGAC
ATCGACCGGCGTCTCGGCGAGCTGCACGAGTTTCTCAAGAGGGCCAAGGA
GGGAGGAGGTATAGGGGCGGGGCTTCCCCTGCCCTTGCCGCCGCCCCCAC
CGCCGGAGGTTGGTGCGGAGGGGGTGACGGAGGCTTCCGCTTCCGCTTCT
TCTCCGGGTGTCTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig77:588020..593884+

>mRNA_E-siliculosus-1a_M_contig77.15846.1 ID=mRNA_E-siliculosus-1a_M_contig77.15846.1|Name=mRNA_E-siliculosus-1a_M_contig77.15846.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3666bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig77:588020..593884+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AGGGGTAGGTCGAGGTCGAACGGCAGCAGCAGAAGGGGAGGCGCAACCCC
GGCTTTCGACCCGACGGCGTACCAGAGAGAACGACAGGCAAAGCTGCAGA
GAGGGGTAGGTCGAGGTCGAACGGCAGCAGCAGAAGGGGAGGCGCAACCC
CGGCTTTCGACCCGACGGCGTACCAGAGAGAACGACAGGCAAAGCTGCAG
AGGTTGGAAGAAGACCGTCGGAGACGGGAGCGGAGGGAGATCGGGTACTC
TCCCGCGAGAAATTCCGGGCGAGATTCTTGGATCGGGTCGTCTAGAGATC
GAGGGTCGGGACCGTCCCTAGCAGGTTGGAAGAAGACCGTCGGAGACGGG
AGCGGAGGGAGATCGGGTACTCTCCCGCGAGAAATTCCGGGCGAGATTCT
TGGATCGGGTCGTCTAGAGATCGAGGGTCGGGACCGTCCCTAGCAGGCGT
CGCCGCCATCGCACCACGAGGAAGGACGACCGCGCGCGGCGGCGGGAGCT
CCGGCTACGCCTCTGCAGGGTCCCAGGCTTCGCGGGCGTCCAGGGGCTCT
TCGACTAGGCGTCGCCGCCATCGCACCACGAGGAAGGACGACCGCGCGCG
GCGGCGGGAGCTCCGGCTACGCCTCTGCAGGGTCCCAGGCTTCGCGGGCG
TCCAGGGGCTCTTCGACTAGTGCTTCCCATAGCGGCGGCGGCGGCGGTGG
AGGCGGCGGCGGTGGTAGTGGCGGTATTGGCGGCGGTACGAAATACTCAG
CCTCCGGTAGATTCGAAGCAACCCCGAACGGTAGCCGCAGGGCGGGGGCA
GGGCGGCCCTCTTCTCGGGCAGACAGCAGGGGGAGGTGGGGAGCATCCCC
TTCTAGAGGTGGCGGCGGGCGGTATGGCGGTGGCGGCTCTAGAGGTGACA
GGGCGACCGGAGGTCGGGATAGTGCTTCCCATAGCGGCGGCGGCGGCGGT
GGAGGCGGCGGCGGTGGTAGTGGCGGTATTGGCGGCGGTACGAAATACTC
AGCCTCCGGTAGATTCGAAGCAACCCCGAACGGTAGCCGCAGGGCGGGGG
CAGGGCGGCCCTCTTCTCGGGCAGACAGCAGGGGGAGGTGGGGAGCATCC
CCTTCTAGAGGTGGCGGCGGGCGGTATGGCGGTGGCGGCTCTAGAGGTGA
CAGGGCGACCGGAGGTCGGGATAGCCCTCGAACATTACGACAACCGAGGA
AGGTCTCCGCCTCTCCCAAAAACTACGGTCGCCACCGCCACCCCGCAGAG
GGGGCCCCGGCGATTGTTGACAGTCCCGGGGGAGGTACCGCCGGTAGTGG
GAGGGGCGGCAGCCGAGCCGGCGCAGGGGGCTTCCTAAGACTAGTCAGCC
CTCGAACATTACGACAACCGAGGAAGGTCTCCGCCTCTCCCAAAAACTAC
GGTCGCCACCGCCACCCCGCAGAGGGGGCCCCGGCGATTGTTGACAGTCC
CGGGGGAGGTACCGCCGGTAGTGGGAGGGGCGGCAGCCGAGCCGGCGCAG
GGGGCTTCCTAAGACTAGTCAGGGACTCCGGCAATTCCTCCGCCGCGACT
TTGTCGACGTCTGGCCGAGGCGAGGAGGACGTTGCCGGCGGGGGGTGGAG
ACGGCGCCGGCGCCCGCGAGATCGGTGGGACGACGACGATGGAGGCGGTG
ACGGTGCCCGCGACTCTGAGGTAGAGCAGGAGCTGCACCAGCGGGAAGAG
GAAGAAGGGCGGCAACACCGCGAAGAAGGTCGTGGTGTTGGTCATGACGG
GCATCGACGCAAGCACGAGGAGGGAGAAGAGGAAGCAATAACAAGGCCTA
CTCGGGGGGGCGGGACTGTCAGAAAAGGAGGAGGACGGGCAGGGACGGGA
TGGGGGGGGCTCGCGAGCAGCTCCGGGGCGGGGGGGGTGGGGGGGGGGGG
GGGCTCGTGCTCCTCGTCCATGAGGTCTTCGGCGGCGTCGTCGGCGACGC
GGCTGCTTCGGAGGGTGGAGCTAAGAACGCCTGCTGAGGAGGAGGAGGCA
GAGGCTATCCGGAAGGGACTCCGGCAATTCCTCCGCCGCGACTTTGTCGA
CGTCTGGCCGAGGCGAGGAGGACGTTGCCGGCGGGGGGTGGAGACGGCGC
CGGCGCCCGCGAGATCGGTGGGACGACGACGATGGAGGCGGTGACGGTGC
CCGCGACTCTGAGGTAGAGCAGGAGCTGCACCAGCGGGAAGAGGAAGAAG
GGCGGCAACACCGCGAAGAAGGTCGTGGTGTTGGTCATGACGGGCATCGA
CGCAAGCACGAGGAGGGAGAAGAGGAAGCAATAACAAGGCCTACTCGGGG
GGGCGGGACTGTCAGAAAAGGAGGAGGACGGGCAGGGACGGGATGGGGGG
GGCTCGCGAGCAGCTCCGGGGCGGGGGGGGTGGGGGGGGGGGGGGGCTCG
TGCTCCTCGTCCATGAGGTCTTCGGCGGCGTCGTCGGCGACGCGGCTGCT
TCGGAGGGTGGAGCTAAGAACGCCTGCTGAGGAGGAGGAGGCAGAGGCTA
TCCGGAAGTCGCAGGAGCTGACCTCGTCGTACAACGAACCTCTGCGAGAA
AGCAAGAGCACTGCAAGCCCCAGCAACTACCGGCACGTGAGCGGCAGTGG
CGATACTCTGGTCGGACGAACGAGAGAAGGAAAGGACCCTGACCATCATC
ACCCCGGGGTGGCTGCAGGAGGGGTCCGAGCGACCGAAAGAACGGGGCAA
GAAGAAGGGCGGCGGCGGCAAGCCTTCTTTTCGGCGTCGTCGTCGTCTTC
GATACAGCAACAGCAAGAAGAGCCTACATTACGCGGTGCTGCTAGCGACG
CCCCCGCAGGCGGCGGCGGCGGCCAAGACCCCCCGGAGCCGCCGAGCTTC
GCCGCCGTCGACAGCGGTGGCGGCGGCGGCGGCGGCGGCGGTGAGATGGA
GGCCGGGCGGGAGATCTCCGACATCGACCGGCGTCTCGGCGAGCTGCACG
AGTTTCTCAAGAGGGCCAAGGAGGGAGGAGGTATAGGGGCGGGGCTTCCC
CTGCCCTTGCCGCCGCCCCCACCGCCGGAGGTTGGTGCGGAGGGGGTGAC
GGAGGCTTCCGCTTCCGCTTCTTCTCCGGGTGTCTGATCGCAGGAGCTGA
CCTCGTCGTACAACGAACCTCTGCGAGAAAGCAAGAGCACTGCAAGCCCC
AGCAACTACCGGCACGTGAGCGGCAGTGGCGATACTCTGGTCGGACGAAC
GAGAGAAGGAAAGGACCCTGACCATCATCACCCCGGGGTGGCTGCAGGAG
GGGTCCGAGCGACCGAAAGAACGGGGCAAGAAGAAGGGCGGCGGCGGCAA
GCCTTCTTTTCGGCGTCGTCGTCGTCTTCGATACAGCAACAGCAAGAAGA
GCCTACATTACGCGGTGCTGCTAGCGACGCCCCCGCAGGCGGCGGCGGCG
GCCAAGACCCCCCGGAGCCGCCGAGCTTCGCCGCCGTCGACAGCGGTGGC
GGCGGCGGCGGCGGCGGCGGTGAGATGGAGGCCGGGCGGGAGATCTCCGA
CATCGACCGGCGTCTCGGCGAGCTGCACGAGTTTCTCAAGAGGGCCAAGG
AGGGAGGAGGTATAGGGGCGGGGCTTCCCCTGCCCTTGCCGCCGCCCCCA
CCGCCGGAGGTTGGTGCGGAGGGGGTGACGGAGGCTTCCGCTTCCGCTTC
TTCTCCGGGTGTCTGA
back to top