mRNA_E-siliculosus-1a_M_contig77.15820.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig77.15820.1 vs. uniprot
Match: D8LT04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT04_ECTSI) HSP 1 Score: 620 bits (1600), Expect = 5.590e-221 Identity = 350/375 (93.33%), Postives = 357/375 (95.20%), Query Frame = 1
Query: 43 MLRVLQPRLPTHGRTPLRRPKVIEGCVRQHGHRRLSTTAEPAKPSSPAAEEPGWPLKYKVAGGAILGTIIPYMFSYAMANDPGSRRLVSKLSPGV-----------VQWFRQRQKGGHFFDEDPKRLEYLAHVPDWINEPVSMEIRTGSGETRRLDGLDAQTPFSSVGRLVQGGGWLTDFDVLDEGDTGDGEAQAGQISATWDTSSSGASSASSYQHEGSSPYSATSAN-SSGVAAAVRRDVAACNIRSWWDIAALEQERARQPAPLATVAGSASSXXXXXXXXXXXXXXXXXXXXXXVGTVGAARGSSAKKMSNAEQARAMIQHLDEMVEALERDKLTGVRSVDDVEEEVRELRRQQKELRRKHPGRRRFLGLF 1131
MLRVLQPRLPTHGR PLRRPKVIEGC+RQHGHRRLSTTAEPAKPSSPAAEEPGWPLKYKVAGGAILGTIIPY+FSYAMANDPGSRRLVSKLSPG+ VQWFRQRQKGGHFFDEDPKRLEYLAHVPDWINEPVSMEIRTGSGETRRLDGLDAQTPFSSVGRLVQGGGWLTDFDVLDEGDTGDGEAQ+GQI ATWD SSSGASSASSY+HEGSSPYSATSAN SSGVAAAVRRDVAACNIRSWWDIAALEQE+ARQPAPLATVAGSA XXXXXXXXXXXXXXXXXXXXXXVGTVGAARGSSAKKMSNAEQARAMIQHLDEMVEALERDKLTGVRS+DDVEE VRELRRQQKELRRKHPGRRRFLGLF
Sbjct: 1 MLRVLQPRLPTHGRAPLRRPKVIEGCIRQHGHRRLSTTAEPAKPSSPAAEEPGWPLKYKVAGGAILGTIIPYIFSYAMANDPGSRRLVSKLSPGIATTLPGGGRLGVQWFRQRQKGGHFFDEDPKRLEYLAHVPDWINEPVSMEIRTGSGETRRLDGLDAQTPFSSVGRLVQGGGWLTDFDVLDEGDTGDGEAQSGQIPATWDISSSGASSASSYEHEGSSPYSATSANTSSGVAAAVRRDVAACNIRSWWDIAALEQEQARQPAPLATVAGSAXXXXXXXXXXXXXXXXXXXXXXXXVGTVGAARGSSAKKMSNAEQARAMIQHLDEMVEALERDKLTGVRSIDDVEEAVRELRRQQKELRRKHPGRRRFLGLF 375 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig77.15820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig77.15820.1 >prot_E-siliculosus-1a_M_contig77.15820.1 ID=prot_E-siliculosus-1a_M_contig77.15820.1|Name=mRNA_E-siliculosus-1a_M_contig77.15820.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=364bp MLRVLQPRLPTHGRTPLRRPKVIEGCVRQHGHRRLSTTAEPAKPSSPAAEback to top mRNA from alignment at E-siliculosus-1a_M_contig77:249263..254107+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig77.15820.1 ID=mRNA_E-siliculosus-1a_M_contig77.15820.1|Name=mRNA_E-siliculosus-1a_M_contig77.15820.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4845bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig77:249263..254107+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig77:249263..254107+ >mRNA_E-siliculosus-1a_M_contig77.15820.1 ID=mRNA_E-siliculosus-1a_M_contig77.15820.1|Name=mRNA_E-siliculosus-1a_M_contig77.15820.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=2184bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig77:249263..254107+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |