mRNA_E-siliculosus-1a_M_contig75.15676.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig75.15676.1
Unique NamemRNA_E-siliculosus-1a_M_contig75.15676.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig75.15676.1 vs. uniprot
Match: D8LF37_ECTSI (S1 motif domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF37_ECTSI)

HSP 1 Score: 375 bits (964), Expect = 1.480e-128
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 3
Query:   81 MTEVVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKQARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKSAAGAIMIPISWQEMQCPTTKEKEPRKCAKPV 650
            MTEVVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPK+ARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKSAAGAIMIPISWQEMQCPTTKEKEPRKCAKPV
Sbjct:    1 MTEVVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKRARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKSAAGAIMIPISWQEMQCPTTKEKEPRKCAKPV 190          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15676.1 vs. uniprot
Match: A0A835YI70_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI70_9STRA)

HSP 1 Score: 234 bits (598), Expect = 4.470e-73
Identity = 117/189 (61.90%), Postives = 149/189 (78.84%), Query Frame = 3
Query:   84 TEVVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKQARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKS-AAGAIMIPISWQEMQCPTTKEKEPRKCAKP 647
            T++ CPG RLGRASE+ +GPGTY RG +I+AS+VGP L+Q  A E G P + V   + A+  DQVI+VGD VM RVTR+    A VEI+C GETVLRE + GI++KED+RATEVD+ ++ +S RPGDI+RARV SLGD+ QY+L+TA  +LGVRWAKS A+GAIM+P+SWQEMQCP T  +EPRKCA+P
Sbjct:    4 TQLACPGDRLGRASEFTSGPGTYTRGPHIFASLVGPVLQQEGA-EGGLPVITVRGGRNAQ--DQVIEVGDVVMARVTRVRALLASVEILCAGETVLREAYNGIIKKEDVRATEVDRVDMGQSFRPGDIVRARVSSLGDARQYYLTTAAPDLGVRWAKSDASGAIMVPVSWQEMQCPVTGVREPRKCARP 189          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15676.1 vs. uniprot
Match: H6WBA8_VAULI (S1 motif domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA8_VAULI)

HSP 1 Score: 199 bits (507), Expect = 2.090e-59
Identity = 101/189 (53.44%), Postives = 136/189 (71.96%), Query Frame = 3
Query:   81 MTEVVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKQARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKSAAGAIMIPISWQEMQCPTTKEKEPRKCAKP 647
            M+  VCPG R+GR  EY +G GTYVRG +IY+S+VG ++++    E+  P L V   K      Q+++VG  VMGRVTR+    A V+I+C G+ VLRE  +GI+RKED+R+TEVDK ++ K  RPGDI+R +VISLG+S  YFLST+  +LGV WA+S AG +++PISW++MQCP TK  E RKCAKP
Sbjct:    1 MSTTVCPGDRIGRCDEYTSGNGTYVRGPHIYSSLVG-RIQKIEVPEN-LPVLTVKGKK--AVVGQILEVGVVVMGRVTRVKNNLASVDILCAGKFVLREICQGIIRKEDVRSTEVDKVDMWKCFRPGDIVRTKVISLGNSRDYFLSTSGEDLGVSWARSEAGEVLVPISWEQMQCPKTKAVEFRKCAKP 185          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15676.1 vs. uniprot
Match: A0A2P6NTR0_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NTR0_9EUKA)

HSP 1 Score: 191 bits (486), Expect = 7.500e-56
Identity = 99/196 (50.51%), Postives = 130/196 (66.33%), Query Frame = 3
Query:   90 VVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKQARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKSAAGAIMIPISWQEMQCPTTKEKEPRKCAKPV*ASQSETTN 677
            +VCPG+RLG    + +G GTY+ G Y++ASV+G + E+ A  + GK  L V + K+      +  +   V  RVTR++ R   V I+CVG+ VLREP  G++R++D+RATE+DK E+ K  RPGDI+ A VISLGDS  YFLSTA+NELGV +AKS AGA M+P SW+ M CP TK KE RK AK    S S   N
Sbjct:    8 LVCPGERLGHTDTFESGEGTYILGNYVHASVIGAR-EETAGKDGGKTLLSVKKEKEPSIVPDIKSI---VTARVTRVNPRFVNVSILCVGDRVLREPFAGMIRQQDVRATEIDKVEIYKCFRPGDIVLAEVISLGDSRSYFLSTAKNELGVIFAKSVAGATMVPTSWESMMCPKTKTKEFRKVAKGASLSSSINVN 199          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15676.1 vs. uniprot
Match: A0A1X2GSF5_9FUNG (S1 motif domain-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GSF5_9FUNG)

HSP 1 Score: 189 bits (479), Expect = 2.870e-55
Identity = 103/189 (54.50%), Postives = 129/189 (68.25%), Query Frame = 3
Query:   84 TEVVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKQARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKSAAGAIMIPISWQEMQCPTTKEKEPRKCAKPV 650
            T  V PG+RLG A +Y +GPGTY R   +YASVVG  L Q        P + VS+ K+  A   V  VG+T+ G++ R+S  QA V I+ VG+   +E   G++R +D+RATE DK ++ +S RPGDII+A VISLGD+  YFLSTA+NELGV +A S AGA MIPISWQEMQCP TK  E RKCAKPV
Sbjct:    4 TLAVTPGQRLGYAQDYISGPGTYERDGLLYASVVG--LRQITEQTGALPIITVSKEKEQSA---VPDVGNTITGKIIRVSPMQATVAIMVVGQVPCKEDFTGVIRIQDVRATEKDKVKIYQSFRPGDIIKAEVISLGDARSYFLSTAKNELGVIFATSLAGATMIPISWQEMQCPITKAIEFRKCAKPV 187          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15676.1 vs. uniprot
Match: A0A4P9XTZ4_9FUNG (S1 motif domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XTZ4_9FUNG)

HSP 1 Score: 187 bits (474), Expect = 1.710e-54
Identity = 96/187 (51.34%), Postives = 131/187 (70.05%), Query Frame = 3
Query:   90 VVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKQARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKSAAGAIMIPISWQEMQCPTTKEKEPRKCAKPV 650
            +V PG+RLGR  +YR GPGTYVR + I+AS+VG +   +AA+E   P + V++ ++     QV  +   V G+V R++ R A V I+ VG T  R+  +GI+R +D+RATE DK ++    RPGD++RA+VISLGD+  Y+LSTA+NELGV +A+S AG  MIPISWQEMQC  TK  E RKCAKP+
Sbjct:    6 IVTPGQRLGREHQYRTGPGTYVRNSVIHASIVGTREIHSAAEEGELPTISVTRGREQTTLPQVDSI---VTGKVLRVNPRFATVAIMAVGPTACRDEFQGIIRVQDVRATEKDKVKIYHCFRPGDVVRAQVISLGDARSYYLSTAQNELGVIFARSVAGVPMIPISWQEMQCTKTKTVELRKCAKPM 189          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15676.1 vs. uniprot
Match: A0A397T025_9GLOM (S1 motif domain-containing protein n=7 Tax=Glomeraceae TaxID=36751 RepID=A0A397T025_9GLOM)

HSP 1 Score: 186 bits (471), Expect = 4.660e-54
Identity = 101/186 (54.30%), Postives = 129/186 (69.35%), Query Frame = 3
Query:   90 VVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKQARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKSAAGAIMIPISWQEMQCPTTKEKEPRKCAKP 647
            +V PG+RLG A +Y +GPGTYVRG  +YASVVG K        +  P L VS+ KQ  A  +V  +   + G+V RI+ ++A V I+ VG +  +E  +GI+R++DIRATE DK ++  S RPGDIIRA VISLGD+  Y+LSTA+NELGV +A+S  GA MIPISWQEMQC  TK  E RKCAKP
Sbjct:    6 IVTPGQRLGFAQDYVSGPGTYVRGNLLYASVVGMKRVTKQTTGES-PMLTVSREKQQSAIPEVYSI---ITGKVIRITPKEAVVSIMVVGNSPCKEDFQGIIRQQDIRATERDKVKIYNSFRPGDIIRAEVISLGDARSYYLSTAKNELGVIYAQSIEGAAMIPISWQEMQCTKTKTTEFRKCAKP 187          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15676.1 vs. uniprot
Match: A0A1C7NNI7_9FUNG (Exosome complex component CSL4 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NNI7_9FUNG)

HSP 1 Score: 185 bits (470), Expect = 7.230e-54
Identity = 98/187 (52.41%), Postives = 126/187 (67.38%), Query Frame = 3
Query:   87 EVVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKQARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKSAAGAIMIPISWQEMQCPTTKEKEPRKCAKP 647
            E V PG+RLG A++Y  G GTY R   +YASVVG +    ++ E G P + VS+ K+  A   V +VG  + G+V R+S  QA + I+ VG+   +E   GI+R +D+RA E DK ++  S RPGDI++A VISLGD+  Y LSTA+NELGV +A S AGA MIPISWQEMQCP TK  E RKCAKP
Sbjct:    6 EAVTPGQRLGYAADYIQGTGTYERDGLLYASVVGQRYIDPSSQEGGLPTMRVSREKEQSA---VPEVGSVITGKVIRVSPHQAVIAIMVVGDMTCKEDFMGIIRTQDVRAAEKDKVKIYNSFRPGDIVKAEVISLGDARSYVLSTAKNELGVIFATSVAGATMIPISWQEMQCPKTKSIELRKCAKP 189          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15676.1 vs. uniprot
Match: A0A163ITM3_ABSGL (S1 motif domain-containing protein n=2 Tax=Absidia TaxID=4828 RepID=A0A163ITM3_ABSGL)

HSP 1 Score: 185 bits (469), Expect = 1.050e-53
Identity = 101/188 (53.72%), Postives = 125/188 (66.49%), Query Frame = 3
Query:   87 EVVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKQARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKSAAGAIMIPISWQEMQCPTTKEKEPRKCAKPV 650
            E V PG+RLG A EY AG GTY R   +YASVVG +      ++D  P + VS+ K+  A   V  VG+ + G++ R++  QA V I+ VG    +E   G +R +D+RA E DK ++  S RPGDII+A VISLGDS  YFLSTA+NELGV +A S AGA MIPISWQEMQCP TK  E RKCAKPV
Sbjct:    8 EAVTPGQRLGYAQEYIAGNGTYERDGLLYASVVGIRHITTPENKDQLPIISVSKEKEQSA---VPDVGNLITGKIIRVNPHQATVAIMVVGNVPCKEDFTGAIRTQDVRAAEKDKVKIYNSFRPGDIIKAEVISLGDSRSYFLSTAKNELGVIFATSVAGATMIPISWQEMQCPKTKTIEYRKCAKPV 192          
BLAST of mRNA_E-siliculosus-1a_M_contig75.15676.1 vs. uniprot
Match: I1CTI8_RHIO9 (S1 motif domain-containing protein n=2 Tax=Rhizopus TaxID=4842 RepID=I1CTI8_RHIO9)

HSP 1 Score: 184 bits (467), Expect = 1.910e-53
Identity = 100/189 (52.91%), Postives = 128/189 (67.72%), Query Frame = 3
Query:   84 TEVVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKPYLIVSQPKQARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREPHRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAENELGVRWAKSAAGAIMIPISWQEMQCPTTKEKEPRKCAKPV 650
            TE V PG+RLG A++Y  GPGTY R   +YASVVG K    + +E   P + VS+ K+  A   V +VG  + G+V R++  QA + I+ VGET  +E   G++R +D+RA E DK ++  S RPGDI++A VISLGD+  Y LSTA+NELGV +A S AG  MIPISWQEMQCP TK  E RKCAKPV
Sbjct:    5 TEAVTPGQRLGYAADYIQGPGTYERDGLLYASVVGHKYIDQSKNEQ-LPTIRVSKEKEQSA---VPEVGSVITGKVIRVAPHQATIAIMVVGETPCKEDFMGVIRTQDVRAAEKDKVKIYNSFRPGDIVKADVISLGDARSYVLSTAKNELGVIFATSVAGVPMIPISWQEMQCPKTKTIELRKCAKPV 189          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig75.15676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF37_ECTSI1.480e-12899.47S1 motif domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YI70_9STRA4.470e-7361.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H6WBA8_VAULI2.090e-5953.44S1 motif domain-containing protein n=1 Tax=Vaucher... [more]
A0A2P6NTR0_9EUKA7.500e-5650.51Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A1X2GSF5_9FUNG2.870e-5554.50S1 motif domain-containing protein n=1 Tax=Hesselt... [more]
A0A4P9XTZ4_9FUNG1.710e-5451.34S1 motif domain-containing protein n=1 Tax=Thamnoc... [more]
A0A397T025_9GLOM4.660e-5454.30S1 motif domain-containing protein n=7 Tax=Glomera... [more]
A0A1C7NNI7_9FUNG7.230e-5452.41Exosome complex component CSL4 n=1 Tax=Choanephora... [more]
A0A163ITM3_ABSGL1.050e-5353.72S1 motif domain-containing protein n=2 Tax=Absidia... [more]
I1CTI8_RHIO91.910e-5352.91S1 motif domain-containing protein n=2 Tax=Rhizopu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig75contigE-siliculosus-1a_M_contig75:701525..703976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size573
Model size1130
Exons4
Ec32 orthologEc-06_001520.1
Ec32 ortholog descriptionCsl4 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko02000,ko03019
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.JK
EggNOG OGsCOG1096@1,KOG3409@2759
EggNOG free text desc.Putative DNA-binding domain
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000790,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016075,GO:0016078,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0016973,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0034427,GO:0034470,GO:0034613,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0042886,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0070727,GO:0071025,GO:0071027,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
KEGG ModuleM00072,M00390,M00391
KEGG Pathwayko00510,ko00513,ko01100,ko03018,ko04141,map00510,map00513,map01100,map03018,map04141
KEGG TC1.A.11,9.A.45.1.2,9.A.45.1.4,9.A.45.1.6
KEGG koko:K03320,ko:K07573,ko:K12669
Preferred nameEXOSC1
Seed eggNOG ortholog2880.D8LF37
Seed ortholog evalue3.7e-102
Seed ortholog score377.5
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig75.15676.1prot_E-siliculosus-1a_M_contig75.15676.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig75 702002..703896 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936063.460937-UTR-E-siliculosus-1a_M_contig75:701524..7020011622936063.460937-UTR-E-siliculosus-1a_M_contig75:701524..702001Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig75 701525..702001 -
1696250913.9186127-UTR-E-siliculosus-1a_M_contig75:701524..7020011696250913.9186127-UTR-E-siliculosus-1a_M_contig75:701524..702001Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig75 701525..702001 -
1622936063.5422726-UTR-E-siliculosus-1a_M_contig75:703896..7039761622936063.5422726-UTR-E-siliculosus-1a_M_contig75:703896..703976Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig75 703897..703976 -
1696250913.9900792-UTR-E-siliculosus-1a_M_contig75:703896..7039761696250913.9900792-UTR-E-siliculosus-1a_M_contig75:703896..703976Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig75 703897..703976 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936063.474079-CDS-E-siliculosus-1a_M_contig75:702001..7020611622936063.474079-CDS-E-siliculosus-1a_M_contig75:702001..702061Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 702002..702061 -
1696250913.9338706-CDS-E-siliculosus-1a_M_contig75:702001..7020611696250913.9338706-CDS-E-siliculosus-1a_M_contig75:702001..702061Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 702002..702061 -
1622936063.490865-CDS-E-siliculosus-1a_M_contig75:702417..7026061622936063.490865-CDS-E-siliculosus-1a_M_contig75:702417..702606Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 702418..702606 -
1696250913.9511235-CDS-E-siliculosus-1a_M_contig75:702417..7026061696250913.9511235-CDS-E-siliculosus-1a_M_contig75:702417..702606Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 702418..702606 -
1622936063.5097954-CDS-E-siliculosus-1a_M_contig75:703011..7031761622936063.5097954-CDS-E-siliculosus-1a_M_contig75:703011..703176Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 703012..703176 -
1696250913.9673226-CDS-E-siliculosus-1a_M_contig75:703011..7031761696250913.9673226-CDS-E-siliculosus-1a_M_contig75:703011..703176Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 703012..703176 -
1622936063.527636-CDS-E-siliculosus-1a_M_contig75:703737..7038961622936063.527636-CDS-E-siliculosus-1a_M_contig75:703737..703896Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 703738..703896 -
1696250913.980047-CDS-E-siliculosus-1a_M_contig75:703737..7038961696250913.980047-CDS-E-siliculosus-1a_M_contig75:703737..703896Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 703738..703896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig75.15676.1

>prot_E-siliculosus-1a_M_contig75.15676.1 ID=prot_E-siliculosus-1a_M_contig75.15676.1|Name=mRNA_E-siliculosus-1a_M_contig75.15676.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=191bp
MTEVVCPGKRLGRASEYRAGPGTYVRGTYIYASVVGPKLEQAAADEDGKP
YLIVSQPKQARAADQVIQVGDTVMGRVTRISTRQAWVEIICVGETVLREP
HRGIVRKEDIRATEVDKAEVAKSLRPGDIIRARVISLGDSTQYFLSTAEN
ELGVRWAKSAAGAIMIPISWQEMQCPTTKEKEPRKCAKPV*
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mRNA from alignment at E-siliculosus-1a_M_contig75:701525..703976-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig75.15676.1 ID=mRNA_E-siliculosus-1a_M_contig75.15676.1|Name=mRNA_E-siliculosus-1a_M_contig75.15676.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2452bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:701525..703976- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACGGGCAGACACACTTGCCTGCACAGCACGCAAGGATTCCACATCCAGT ATAGGGACACTGAGGTCCACGCGCAACGTTATGACGGAAGTCGTGTGCCC TGGCAAGCGATTAGGGAGGGCAAGCGAGTATCGGGCGGGTCCAGGGACCT ATGTGCGAGGGACATATATCTATGCCAGCGTCGTCGGACCGAAGTTGGAG CAGGCGGCGGCAGATGAGGACGGCAAACCATACCTAATTGTGAGTGCGGT GGAATAGACTATCTGCAGACCGAGAGGTACGGTACGGCCGTTGCCCCCAT GGTCAGCACTGCGGTTGGTATCAGCCATGCGCTGCCGTAGGAACGTAGGA ACTGCTACTGACTGGTGTTATAAGCGGGACTGTTTGCCTAGTACGGTTTG CTTGCAGCCAGTGGGATTCGCGGGAGGTACGATGTGTTCATTTGGAAACA AGATGCCGTTTGGACAAATCATGCGATGGTGGTGGGGTGGTAGACGGTGA CCTAGACTACATGTAATTCTGCCAAACTCGCACACACTGTCCATGGTTCT CATGGTTCTACGGAGATGTCTGGGCAAGCGAAAACTTGAAGAGACACCTC TTGAGAGCCGGTTGAAACGTCAATTTTTCCAGAAGCGCACACGACTCGCA CTCATTCCCACGTCGACCTCCTCCGTGGTTGTTTTCGTTTTGCGGAATTA CTGTACTCAAGTGGACGGAAATACATGCACATGTAGTTTTAAAGTTTTAA AATGTCCATGAACCTGACATTTTTTTTCTTGTGGGGATTTGCGTTCTCAG GTGTCCCAGCCGAAGCAGGCCAGAGCAGCCGACCAAGTGATCCAAGTGGG CGATACTGTGATGGGGAGGGTGACCCGCATCAGCACGAGGCAGGCGTGGG TGGAGATTATCTGCGTGGGAGAGACGGTGTTGCGAGAGCCCCACCGAGGC ATCGTCCGGAAAGAGGTGCGCTCAACTACGCACGGCCGGCACGAGTAGCC TTACGTCGTATTGGCCGTGTTGACCCTACAGCTGCAGCTAGCTGGTGTGT ACGGAAGAATTTCGATTGCAAAAGGGGTGCGTACCGAACGCTCTTTCGTA AAACTGCAGTAGCCGTTCTATGCAAGTCGTTCGCGAAATGCAAGATCGCG TGCCTGCACGGCTGCATGACGAGCTGATCTGTTCGTAGTGTCAGCAACAC CCGCCAGTCGATCCAAAGCCGTGGTGGTGGTGGTACTTCGCGGTTTGCAC AAGAGCAGGCTCAGGTCCTGTTGTGCACCCCCAGGTGCGGCCATGTACAT CGCGGTCTCATCACGCAGATGACACCCCGCAAGTCCCGTTGCATTTTTTC CGTGTCAAATCGCTTAACAGGATATCCGTGCGACAGAAGTGGACAAAGCG GAGGTAGCGAAGTCGCTGCGACCCGGCGACATCATACGAGCGCGTGTCAT ATCCTTGGGCGATTCTACGCAGTACTTCTTGAGCACGGCGGAGAACGAGC TCGGAGTTCGATGGGCAAAATCCGCGGCCGGGGCAATCATGATCCCCATC AGCTGGCAGGTGTGCTCGGATAACCCTACCGACCAACTCACTTGCTAGCG GATATGGCTGGCTCGCCTAAGGCGAACAATTGCATGTTGTTCGTGGTGGC CTAGAACGGAAGACGCTGCAGTGGGTGCTACGAAAAAGATGGATTTCGTG ATGCAGAGCAATTCTGCGCGTGGCACTTCTTTGCTTCTTGCGTCGACTCG ATGGAAGTACCAACCAACCAGGCAGCGGAGACAGGTTTCCAAAGTGCAGG CAGCCCCCCGGCTACCGAACAACGGCAAGCGCCATTTTCATAACAGAATA ACCCCGCCCCGCCCCATCTTGTGCCACAAACTATTTTGTTTGCGTGTTGT TCCGCTCCCGTCCAGGAAATGCAATGTCCGACGACCAAGGAAAAGGAGCC TAGAAAATGCGCCAAGCCGGTGTAGGCTAGTCAGTCAGAGACGACGAACC CGAAAACGCCTTCGTGTGCATGACACTTTTCAAGTAGAGGAAAGGAGGGC AGCCAGACCGACGCTACCCGGTGATAGTGCTGCTGTTGCAAGAGAGTTTC GATCCCTTTGGCTGTCGGACATAGTGTTCAACCATGGGCCTTCCAACTCC ACGTGTGACTTCGCATGGGACGTGAAAAGATTGTACGCCTTTCGTCACGA TACAGCTGGACGGCTCAGGGTTGCAGTGGACATACAATCCTGGAATAAAA GCGTGTTTGTCTTTGTCCGACGCCCGCTGTTTCTCACGTGCCTGCAAGAA GCATCACCGATTTTTGTTTTATGCTCAGGCCAATCCAACCCCGGGTCACG CTGTCAGTTGGCACTGATGCTCTAGGCACAGACCGTGGCGTACCACGAAA CCGGTAGAGTCTCCACAGTTGTAACCTGGGTGGTTTTAAGTCGAAAACGG GG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig75:701525..703976-

>mRNA_E-siliculosus-1a_M_contig75.15676.1 ID=mRNA_E-siliculosus-1a_M_contig75.15676.1|Name=mRNA_E-siliculosus-1a_M_contig75.15676.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1146bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:701525..703976- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGACGGAAGTCGTGTGCCCTGGCAAGCGATTAGGGAGGGCAAGCGAGTA
TCGGGCGGGTCCAGGGACCTATGTGCGAGGGACATATATCTATGCCAGCG
TCGTCGGACCGAAGTTGGAGCAGGCGGCGGCAGATGAGGACGGCAAACCA
TACCTAATTATGACGGAAGTCGTGTGCCCTGGCAAGCGATTAGGGAGGGC
AAGCGAGTATCGGGCGGGTCCAGGGACCTATGTGCGAGGGACATATATCT
ATGCCAGCGTCGTCGGACCGAAGTTGGAGCAGGCGGCGGCAGATGAGGAC
GGCAAACCATACCTAATTGTGTCCCAGCCGAAGCAGGCCAGAGCAGCCGA
CCAAGTGATCCAAGTGGGCGATACTGTGATGGGGAGGGTGACCCGCATCA
GCACGAGGCAGGCGTGGGTGGAGATTATCTGCGTGGGAGAGACGGTGTTG
CGAGAGCCCCACCGAGGCATCGTCCGGAAAGAGGTGTCCCAGCCGAAGCA
GGCCAGAGCAGCCGACCAAGTGATCCAAGTGGGCGATACTGTGATGGGGA
GGGTGACCCGCATCAGCACGAGGCAGGCGTGGGTGGAGATTATCTGCGTG
GGAGAGACGGTGTTGCGAGAGCCCCACCGAGGCATCGTCCGGAAAGAGGA
TATCCGTGCGACAGAAGTGGACAAAGCGGAGGTAGCGAAGTCGCTGCGAC
CCGGCGACATCATACGAGCGCGTGTCATATCCTTGGGCGATTCTACGCAG
TACTTCTTGAGCACGGCGGAGAACGAGCTCGGAGTTCGATGGGCAAAATC
CGCGGCCGGGGCAATCATGATCCCCATCAGCTGGCAGGATATCCGTGCGA
CAGAAGTGGACAAAGCGGAGGTAGCGAAGTCGCTGCGACCCGGCGACATC
ATACGAGCGCGTGTCATATCCTTGGGCGATTCTACGCAGTACTTCTTGAG
CACGGCGGAGAACGAGCTCGGAGTTCGATGGGCAAAATCCGCGGCCGGGG
CAATCATGATCCCCATCAGCTGGCAGGAAATGCAATGTCCGACGACCAAG
GAAAAGGAGCCTAGAAAATGCGCCAAGCCGGTGTAGGAAATGCAATGTCC
GACGACCAAGGAAAAGGAGCCTAGAAAATGCGCCAAGCCGGTGTAG
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