mRNA_E-siliculosus-1a_M_contig75.15641.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig75.15641.1 vs. uniprot
Match: D7FUU5_ECTSI (Matrin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUU5_ECTSI) HSP 1 Score: 608 bits (1568), Expect = 7.160e-206 Identity = 320/334 (95.81%), Postives = 321/334 (96.11%), Query Frame = 1
Query: 1 MSSSLLERARGFHEDLEIYERGIIEQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTSGRAATAXXXXXXXXXXGAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKEGKGVSNGVAPGHGADANANGTA 1002
MSSSLLERARGFHEDLEIYERGII+QLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTSGRAA XXXXXXXXXX AAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKE APGHGAD NANG A
Sbjct: 1 MSSSLLERARGFHEDLEIYERGIIDQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTSGRAAXXXXXXXXXXXXXAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKGKKEXXXXXXXXAPGHGADPNANGPA 334
BLAST of mRNA_E-siliculosus-1a_M_contig75.15641.1 vs. uniprot
Match: D7G993_ECTSI (Matrin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G993_ECTSI) HSP 1 Score: 366 bits (939), Expect = 4.600e-117 Identity = 181/184 (98.37%), Postives = 182/184 (98.91%), Query Frame = 2
Query: 1061 KVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 1612
KVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNE XXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDI+LIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM
Sbjct: 25 KVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEEEXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIVLIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 208
BLAST of mRNA_E-siliculosus-1a_M_contig75.15641.1 vs. uniprot
Match: A0A836CE40_9STRA (Matrin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE40_9STRA) HSP 1 Score: 350 bits (897), Expect = 4.140e-106 Identity = 176/306 (57.52%), Postives = 219/306 (71.57%), Query Frame = 1
Query: 10 SLLERARGFHEDLEIYERGIIEQLETKPRTQKERVAQQHRIANLCDGSTERSQGLHEIYEDTDGSMREEVASMRGQKVMDTFYDRLKETWSYHTHHPGLPVTFGPNLEAETEVKVQFSGEELYGKFFDLHGMFVRWVNLPQCKDKQLDYSQFLQALGRFEDIPEQEKLRGKAYAGFLADLREYLGGFLTRTQPLVDLDEVLGDTDSSFEEAWEAGTLPGWTSGRAATAXXXXXXXXXXGAAAPRVLDLKKFHDADELRALGMDRLKEALQAIGLKCGGTLEQRADRLFSVKGKKPEEIDQKLKAKG 927
SLLERAR FHED+E YE II++LE KP+T KERV QQHR+ANL + RS+ L IYED D SM++EVA+MRG+ + FYDR K +WSYH +P LPV GPN++ E E KV FSGEEL+GK FDLH ++ RWVN PQC DK+LDY +L L D+PE+ K R K YAG++ADL YL GFL RTQPLVD DE++ + ++ F++AWEAG + GW R + A G A R LDL +H A++L LG+DRLKEAL+A+GLKCGGTL+QRA+RL +VKGKKP EID KL AKG
Sbjct: 2 SLLERARAFHEDIETYEMAIIKELEAKPKTNKERVYQQHRVANLLSQAVARSKELDAIYEDKDDSMKQEVAAMRGRDALKNFYDRAKSSWSYHARYPDLPVNTGPNIDEEKEPKVTFSGEELFGKHFDLHDLYARWVNSPQCSDKRLDYGAYLAGLAALGDVPERAK-RSKGYAGYVADLEAYLRGFLARTQPLVDADEIVKEAEAEFDKAWEAGRVKGWP--RVSKAAPHKAAAPGGGLTA-RHLDLSLYHAAEDLMPLGLDRLKEALEALGLKCGGTLQQRAERLMAVKGKKPSEIDPKLLAKG 303
BLAST of mRNA_E-siliculosus-1a_M_contig75.15641.1 vs. uniprot
Match: A0A812TNG2_SYMMI (SF3A3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TNG2_SYMMI) HSP 1 Score: 259 bits (661), Expect = 5.160e-74 Identity = 126/192 (65.62%), Postives = 154/192 (80.21%), Query Frame = 2
Query: 1037 KQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 1612
K+ A LE +++L + + + +T+R +K+ TRT+EE+ ++EEE G LP+ E D+EGP+YNPLNLPLGWDGKPIP+WLYKLHGLGVEFKCEICG+ SY GRR FDRHFQEWRHAHGMRCLG+PNTKHFHDI LI+DA LY+KI+DSL KEQ+ + EE+ED EGNVLNRRTYEDLARQGL+
Sbjct: 208 KKTALLEYLIQSLCSLMAEIVTATRRHAEKQQTRTLEEKLALLEEEEYGTLPDVEEADDDE-DDEGPLYNPLNLPLGWDGKPIPFWLYKLHGLGVEFKCEICGNQSYWGRRAFDRHFQEWRHAHGMRCLGVPNTKHFHDITLIEDALALYSKIRDSLKKEQFVEDVEEEFEDSEGNVLNRRTYEDLARQGLL 398
BLAST of mRNA_E-siliculosus-1a_M_contig75.15641.1 vs. uniprot
Match: A0A7S2V2Q3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Q3_9STRA) HSP 1 Score: 252 bits (644), Expect = 1.040e-72 Identity = 128/198 (64.65%), Postives = 149/198 (75.25%), Query Frame = 2
Query: 1037 KQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXXD------EEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 1612
K++A +E ++ AL E D + +T++QV++K T+T+EER G + XXX +EGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVE+KCEICGD+SY GRR FDRHFQEWRHAHGMRCLGIPNTKHFHDI LI+DA L+ KIKD L E WN + EEYED EGNVLNRRTYEDLARQGL+
Sbjct: 117 KEIALMEFEISALYEQMKDVVMNTRKQVERKQTKTMEERXXXXXXXXXGTGVAAEDELAXXXXXXXXXXDEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGDYSYMGRRAFDRHFQEWRHAHGMRCLGIPNTKHFHDITLIEDATALFDKIKDQLAGEMWNADMEEEYEDSEGNVLNRRTYEDLARQGLL 314
BLAST of mRNA_E-siliculosus-1a_M_contig75.15641.1 vs. uniprot
Match: A0A7S2HV93_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV93_9STRA) HSP 1 Score: 251 bits (642), Expect = 5.150e-70 Identity = 128/193 (66.32%), Postives = 152/193 (78.76%), Query Frame = 2
Query: 1043 LAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFNEXXXXXXD---EEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 1612
+A E ++ L + D L++ +R VDKK T+ VEERD E EEE GAL ++ XXXX +EGP+YNPLNLPLGWDGKPIPYWLYKLHGLGVE+KCEICG+ SY GRR FDRHFQEWRHA+GMRCL IPNTKHFHDI LI+DA +LY KIKD L +EQ++ EE+ED EG+VLNRRT+EDLARQGL+
Sbjct: 318 VARAEFRISFLCDQMADVLDAPRRYVDKKQTQLVEERDAEFAEEESGALAALDDEEXXXXXXXXDEGPLYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNMSYWGRRAFDRHFQEWRHAYGMRCLKIPNTKHFHDITLIEDATNLYDKIKDQLKQEQFDANQEEEFEDSEGHVLNRRTFEDLARQGLL 510
BLAST of mRNA_E-siliculosus-1a_M_contig75.15641.1 vs. uniprot
Match: A0A1V9Z208_9STRA (Splicing factor 3A n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z208_9STRA) HSP 1 Score: 248 bits (633), Expect = 5.590e-69 Identity = 123/193 (63.73%), Postives = 146/193 (75.65%), Query Frame = 2
Query: 1037 KQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFN-EXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 1612
K LA LE VK L+ + T+ + +T ++ K TRT EE EI EEE AL + + D+E P YNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICG+ SY GRR+FDRHFQ+WRHAHGMRCLGIPNTKHFHDI + DA LY K+K+ L+KE WN + EE+ED EGNVLN++TY+DLARQGL+
Sbjct: 298 KALANLEVHVKTLIGLLTEVVHATISFLELKQTRTPEELQAEILEEEDDALSDVEIDNDNVDDDDEQPFYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGNHSYWGRRDFDRHFQQWRHAHGMRCLGIPNTKHFHDITSMADALALYEKLKEQLEKETWNKANEEEFEDSEGNVLNKKTYQDLARQGLL 490
BLAST of mRNA_E-siliculosus-1a_M_contig75.15641.1 vs. uniprot
Match: A0A6V1NE02_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NE02_HETAK) HSP 1 Score: 234 bits (598), Expect = 1.270e-68 Identity = 104/129 (80.62%), Postives = 113/129 (87.60%), Query Frame = 2
Query: 1226 EEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 1612
+EGP+YNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCE+CG SY GRR FDRHFQEWRHAHGMRCLGIPNTKHFHDI I+DA+ LYAK+K LD + W+ EEYED EGNVLNRRTYEDLARQGL+
Sbjct: 16 DEGPVYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEVCGGASYMGRRAFDRHFQEWRHAHGMRCLGIPNTKHFHDITTIEDAKALYAKLKAGLDGDAWDGAVEEEYEDSEGNVLNRRTYEDLARQGLL 144
BLAST of mRNA_E-siliculosus-1a_M_contig75.15641.1 vs. uniprot
Match: A0A5D6Y8G9_9STRA (C2H2-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8G9_9STRA) HSP 1 Score: 247 bits (631), Expect = 2.820e-68 Identity = 122/194 (62.89%), Postives = 146/194 (75.26%), Query Frame = 2
Query: 1037 KQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFN--EXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 1612
+ LA E V+ + E+ T+ + +T ++ K TRT EE EI EEE+G+ + + D+E P YNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICG+ SY GRR FDRHFQEWRHA GMRCL IPNTKHFHDI L++DA LY K+KD +D E WNPE+ EE+ED EGNVLNR+T+EDLARQGL+
Sbjct: 336 RSLAFAEVLVRRMCELLTEVIHATISYLELKQTRTHEELLAEIAEEEEGSFSDVDVENAHGDGEDDEQPFYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGNHSYWGRRAFDRHFQEWRHAFGMRCLKIPNTKHFHDITLMRDAIQLYEKLKDQIDTENWNPENEEEFEDSEGNVLNRKTFEDLARQGLL 529
BLAST of mRNA_E-siliculosus-1a_M_contig75.15641.1 vs. uniprot
Match: K3X6A8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6A8_GLOUD) HSP 1 Score: 246 bits (627), Expect = 8.990e-68 Identity = 121/194 (62.37%), Postives = 146/194 (75.26%), Query Frame = 2
Query: 1037 KQLAALETKVKALLEVQTDTLESTKRQVDKKHTRTVEERDQEIQEEEQGALPEFN--EXXXXXXDEEGPIYNPLNLPLGWDGKPIPYWLYKLHGLGVEFKCEICGDFSYKGRRNFDRHFQEWRHAHGMRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGNVLNRRTYEDLARQGLM 1612
K LA E ++ + E+ T+ + +T ++ K TRT +E EI EEE+G+ + + D+E P YNPLNLPLGWDGKPIPYWLYKLHGLGVE+KCEICG+ SY GRR FDRHFQEWRHA GMRCL IPNTKHFHDI L++DA LY K+KD +D E WNPE+ EE+ED EGNVLNR+TYEDLARQGL+
Sbjct: 331 KALAFDEVLIRRMCELLTEVIHATISYLELKQTRTHDELLAEIAEEEEGSFSDVDVENANPEGDDDEQPFYNPLNLPLGWDGKPIPYWLYKLHGLGVEYKCEICGNHSYWGRRAFDRHFQEWRHAFGMRCLKIPNTKHFHDITLMRDAIQLYEKLKDQIDAENWNPENEEEFEDSEGNVLNRKTYEDLARQGLL 524 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig75.15641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig75.15641.1 >prot_E-siliculosus-1a_M_contig75.15641.1 ID=prot_E-siliculosus-1a_M_contig75.15641.1|Name=mRNA_E-siliculosus-1a_M_contig75.15641.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=68bp MRCLGIPNTKHFHDIILIQDARDLYAKIKDSLDKEQWNPEDNEEYEDGEGback to top mRNA from alignment at E-siliculosus-1a_M_contig75:441661..450143+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig75.15641.1 ID=mRNA_E-siliculosus-1a_M_contig75.15641.1|Name=mRNA_E-siliculosus-1a_M_contig75.15641.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8483bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:441661..450143+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig75:441661..450143+ >mRNA_E-siliculosus-1a_M_contig75.15641.1 ID=mRNA_E-siliculosus-1a_M_contig75.15641.1|Name=mRNA_E-siliculosus-1a_M_contig75.15641.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=408bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:441661..450143+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |