mRNA_E-siliculosus-1a_M_contig75.15625.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig75.15625.1
Unique NamemRNA_E-siliculosus-1a_M_contig75.15625.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig75.15625.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.500e-10
Identity = 43/77 (55.84%), Postives = 47/77 (61.04%), Query Frame = 2 
Query:  197 LDRLMARDSAGDNVSYVLARTVWNNLQYLAALAIGAKGLEREPMPARGVLSAR---------YEGIPRDVLLAVLRH 400
            LDR   RDS GDNVSYVLARTV   LQYLAA  IGA G   +    RG   AR          EGIPRDV+LA+LR+
Sbjct:  149 LDRQKERDSQGDNVSYVLARTVRRILQYLAAQEIGASGQGNQCR--RGDCFARAMGMFFGKGMEGIPRDVVLALLRY 223
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BLAST of mRNA_E-siliculosus-1a_M_contig75.15625.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 5.330e-8
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 2 
Query:  197 LDRLMARDSAGDNVSYVLARTVWNNLQYLAALAIGAKGLEREPMPARGVLSARYEGIPR 373
            LDR  ARDS GDNV YVLARTV +NLQYLAA  IGA G   +    RG+  +RY  + R
Sbjct:  116 LDRQKARDSEGDNVPYVLARTVRSNLQYLAAQEIGATGQGNQCR--RGMFCSRYGHVLR 172
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig75.15625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7P3_9PHAE2.500e-1055.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI5.330e-857.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig75contigE-siliculosus-1a_M_contig75:271025..272170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size198
Model size424
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig75.15625.1prot_E-siliculosus-1a_M_contig75.15625.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig75 271043..271240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936050.193769-UTR-E-siliculosus-1a_M_contig75:271024..2710421622936050.193769-UTR-E-siliculosus-1a_M_contig75:271024..271042Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig75 271025..271042 -
1696250908.586093-UTR-E-siliculosus-1a_M_contig75:271024..2710421696250908.586093-UTR-E-siliculosus-1a_M_contig75:271024..271042Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig75 271025..271042 -
1622936050.2318938-UTR-E-siliculosus-1a_M_contig75:271240..2712601622936050.2318938-UTR-E-siliculosus-1a_M_contig75:271240..271260Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig75 271241..271260 -
1696250908.615425-UTR-E-siliculosus-1a_M_contig75:271240..2712601696250908.615425-UTR-E-siliculosus-1a_M_contig75:271240..271260Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig75 271241..271260 -
1622936050.246121-UTR-E-siliculosus-1a_M_contig75:271982..2721701622936050.246121-UTR-E-siliculosus-1a_M_contig75:271982..272170Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig75 271983..272170 -
1696250908.624748-UTR-E-siliculosus-1a_M_contig75:271982..2721701696250908.624748-UTR-E-siliculosus-1a_M_contig75:271982..272170Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig75 271983..272170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936050.2110696-CDS-E-siliculosus-1a_M_contig75:271042..2712401622936050.2110696-CDS-E-siliculosus-1a_M_contig75:271042..271240Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 271043..271240 -
1696250908.599916-CDS-E-siliculosus-1a_M_contig75:271042..2712401696250908.599916-CDS-E-siliculosus-1a_M_contig75:271042..271240Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig75 271043..271240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig75.15625.1

>prot_E-siliculosus-1a_M_contig75.15625.1 ID=prot_E-siliculosus-1a_M_contig75.15625.1|Name=mRNA_E-siliculosus-1a_M_contig75.15625.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=66bp
MARDSAGDNVSYVLARTVWNNLQYLAALAIGAKGLEREPMPARGVLSARY
EGIPRDVLLAVLRHF*
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mRNA from alignment at E-siliculosus-1a_M_contig75:271025..272170-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig75.15625.1 ID=mRNA_E-siliculosus-1a_M_contig75.15625.1|Name=mRNA_E-siliculosus-1a_M_contig75.15625.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1146bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:271025..272170- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CCTGAGAGGGCCTTGGACCATCCAGTGGAGTCCGAGCATGGCTGAAAGAG
CAAGCAAGCGGAGGTGCCGCGAGCGGGTACGCATGCGAGACGCCGCTGCC
GAAGTGGGACGCCAGCGACCCAACAGACCACGACCTGCGGACGCGGACGC
CAGCAGGCCCATCTCATAGCCCACAGGCCAATATCCAGGTATGTGTATTG
TGGCTTGCTTCGTTCATCAAAACCACCTCTCAGACGCGCGGCCTCCTACC
GGCAGGCCGCAGATTGATTGTGTACATGTACAGCAGTGTGCCAGTTTTCG
CAAGAACACAAACAACTGGCTCTATCCTATCCTATAGCATGTAGTCTATG
TTGGATAAACTCCTGTTGGCACGCAGCAGTCACATATGCATAGATAGATG
CAGAGTTAGGAGTGGCTGGGTGCCCCGGAACGTATAAGCCCTCTCCAAAA
CCAAAACAACTGCGCTGTGCAAAATCAAAAAGGCCCCAAAAACGCACACC
ATGCGTGACACAAGATATCACACCCCTGCACCATTTACTAGCAGTTAGAG
CTCCACCTCAGCACCGGATCCCGAAGATGTGCATTCAAACGATACGCGTA
CAGGAAGCGGTCGACGAGAGGGTTCCTTCACCTCCGACATTTTCTGCATC
ACCACTCCTATTTCTCTTGTGGAAGAGTGGAGCATTTGAATTTCGTATTG
GGGGTGATACATTGTGTCACCCTACGGTATCGTTGTCTAGTGTCGGGGTT
CAGGATAAAGCCAAGGTATGCACGGTGCGTGGAGTTAATTGCACGGATTA
GGCGGTGCTAGTCTATCCTGCAACCTTGCTCAAGGTGGCTACTTGTTTTT
GTTAATGTATTCAAAATTCCATGCTCCCCGCTCCCCTCCACCGCCCCCGC
CCCCTCGCAGCATGTGCTCTCGACCGTCTGATGGCGAGGGACAGCGCCGG
CGATAATGTTTCGTACGTGCTTGCGCGCACGGTGTGGAACAACCTGCAGT
ACTTGGCGGCGCTGGCGATTGGGGCAAAGGGGCTGGAGAGGGAACCAATG
CCAGCGCGGGGAGTGCTTAGCGCGCGATACGAGGGCATTCCTCGTGATGT
TTTACTAGCGGTGCTGAGGCACTTTTAGGTTCTCATCGACGTTTCT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig75:271025..272170-

>mRNA_E-siliculosus-1a_M_contig75.15625.1 ID=mRNA_E-siliculosus-1a_M_contig75.15625.1|Name=mRNA_E-siliculosus-1a_M_contig75.15625.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=396bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig75:271025..272170- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCGAGGGACAGCGCCGGCGATAATGTTTCGTACGTGCTTGCGCGCAC
GGTGTGGAACAACCTGCAGTACTTGGCGGCGCTGGCGATTGGGGCAAAGG
GGCTGGAGAGGGAACCAATGCCAGCGCGGGGAGTGCTTAGCGCGCGATAC
GAGGGCATTCCTCGTGATGTTTTACTAGCGGTGCTGAGGCACTTTTAGAT
GGCGAGGGACAGCGCCGGCGATAATGTTTCGTACGTGCTTGCGCGCACGG
TGTGGAACAACCTGCAGTACTTGGCGGCGCTGGCGATTGGGGCAAAGGGG
CTGGAGAGGGAACCAATGCCAGCGCGGGGAGTGCTTAGCGCGCGATACGA
GGGCATTCCTCGTGATGTTTTACTAGCGGTGCTGAGGCACTTTTAG
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