mRNA_E-siliculosus-1a_M_contig744.15584.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig744.15584.1
Unique NamemRNA_E-siliculosus-1a_M_contig744.15584.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig744.15584.1 vs. uniprot
Match: D7FLV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV3_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.630e-16
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 TALVDARSVAALQVTAEAMVRDFPEEEALEPPMGGGGMG 117
            TALVDARSVAALQVTAEAMVRDFPEEEALEPPMGGGGMG
Sbjct:    3 TALVDARSVAALQVTAEAMVRDFPEEEALEPPMGGGGMG 41
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BLAST of mRNA_E-siliculosus-1a_M_contig744.15584.1 vs. uniprot
Match: A0A6H5KRB3_9PHAE (HSP60 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRB3_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 7.090e-6
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 TALVDARSVAALQVTAEAMVRDFPEEEALEPPMGGG 108
            TALVDA+SVAAL +TAEAMV D PEEEA   PMGGG
Sbjct:  527 TALVDAQSVAALLMTAEAMVADLPEEEAPASPMGGG 562
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig744.15584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLV3_ECTSI1.630e-16100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRB3_9PHAE7.090e-677.78HSP60 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig744contigE-siliculosus-1a_M_contig744:4279..4446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size168
Model size168
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936043.3462353-CDS-E-siliculosus-1a_M_contig744:4278..44461622936043.3462353-CDS-E-siliculosus-1a_M_contig744:4278..4446Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig744 4279..4446 +
1696250905.501878-CDS-E-siliculosus-1a_M_contig744:4278..44461696250905.501878-CDS-E-siliculosus-1a_M_contig744:4278..4446Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig744 4279..4446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig744.15584.1prot_E-siliculosus-1a_M_contig744.15584.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig744 4279..4446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig744.15584.1

>prot_E-siliculosus-1a_M_contig744.15584.1 ID=prot_E-siliculosus-1a_M_contig744.15584.1|Name=mRNA_E-siliculosus-1a_M_contig744.15584.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=56bp
TALVDARSVAALQVTAEAMVRDFPEEEALEPPMGGGGMGGGLGGIGGKPG
MIQSP*
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mRNA from alignment at E-siliculosus-1a_M_contig744:4279..4446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig744.15584.1 ID=mRNA_E-siliculosus-1a_M_contig744.15584.1|Name=mRNA_E-siliculosus-1a_M_contig744.15584.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=168bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig744:4279..4446+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACGGCATTGGTAGACGCCCGGAGCGTTGCCGCTCTCCAAGTGACCGCCGA
GGCGATGGTGAGGGACTTCCCGGAAGAGGAAGCACTGGAACCGCCGATGG
GCGGAGGGGGCATGGGTGGCGGACTGGGAGGAATTGGCGGCAAGCCCGGC
ATGATACAATCCCCGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig744:4279..4446+

>mRNA_E-siliculosus-1a_M_contig744.15584.1 ID=mRNA_E-siliculosus-1a_M_contig744.15584.1|Name=mRNA_E-siliculosus-1a_M_contig744.15584.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=336bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig744:4279..4446+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ACGGCATTGGTAGACGCCCGGAGCGTTGCCGCTCTCCAAGTGACCGCCGA
GGCGATGGTGAGGGACTTCCCGGAAGAGGAAGCACTGGAACCGCCGATGG
GCGGAGGGGGCATGGGTGGCGGACTGGGAGGAATTGGCGGCAAGCCCGGC
ATGATACAATCCCCGTAAACGGCATTGGTAGACGCCCGGAGCGTTGCCGC
TCTCCAAGTGACCGCCGAGGCGATGGTGAGGGACTTCCCGGAAGAGGAAG
CACTGGAACCGCCGATGGGCGGAGGGGGCATGGGTGGCGGACTGGGAGGA
ATTGGCGGCAAGCCCGGCATGATACAATCCCCGTAA
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