mRNA_E-siliculosus-1a_M_contig72.15344.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig72.15344.1
Unique NamemRNA_E-siliculosus-1a_M_contig72.15344.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig72.15344.1 vs. uniprot
Match: D8LGJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGJ0_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 6.410e-50
Identity = 90/110 (81.82%), Postives = 94/110 (85.45%), Query Frame = 1 
Query:   79 DGLGGWVMPEVGPDGEAKFKMVGPTGNCYGYSIARSGAYRFGLHPRSEGRRPPFKHVAHKRGRDADASDEAPAAKRRRCPKLSEEEVIAILSQRLAELEKAEHEAARAKE 408
            DG+GGWVMPE GPDGEAKFKM GPTGNCY YS ARSGAYRFGLHPRSEG        A+KRGRDADASDEAPAAKR  CPKLSEE++IAI  QRLAELEKAEHEAARAKE
Sbjct:    3 DGVGGWVMPEAGPDGEAKFKMTGPTGNCYDYSKARSGAYRFGLHPRSEGGE------AYKRGRDADASDEAPAAKR--CPKLSEEDIIAIFPQRLAELEKAEHEAARAKE 104
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig72.15344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGJ0_ECTSI6.410e-5081.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig72contigE-siliculosus-1a_M_contig72:6722..12472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size609
Model size609
Exons4
Ec32 orthologEc-10_001860.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig72.15344.1prot_E-siliculosus-1a_M_contig72.15344.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig72 6722..12472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935979.5834553-CDS-E-siliculosus-1a_M_contig72:6721..67981622935979.5834553-CDS-E-siliculosus-1a_M_contig72:6721..6798Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 6722..6798 +
1696250874.898062-CDS-E-siliculosus-1a_M_contig72:6721..67981696250874.898062-CDS-E-siliculosus-1a_M_contig72:6721..6798Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 6722..6798 +
1622935979.6005924-CDS-E-siliculosus-1a_M_contig72:10570..106751622935979.6005924-CDS-E-siliculosus-1a_M_contig72:10570..10675Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 10571..10675 +
1696250874.9111662-CDS-E-siliculosus-1a_M_contig72:10570..106751696250874.9111662-CDS-E-siliculosus-1a_M_contig72:10570..10675Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 10571..10675 +
1622935979.6183918-CDS-E-siliculosus-1a_M_contig72:11717..117621622935979.6183918-CDS-E-siliculosus-1a_M_contig72:11717..11762Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 11718..11762 +
1696250874.9237893-CDS-E-siliculosus-1a_M_contig72:11717..117621696250874.9237893-CDS-E-siliculosus-1a_M_contig72:11717..11762Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 11718..11762 +
1622935979.6348774-CDS-E-siliculosus-1a_M_contig72:12090..124721622935979.6348774-CDS-E-siliculosus-1a_M_contig72:12090..12472Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 12091..12472 +
1696250874.9322293-CDS-E-siliculosus-1a_M_contig72:12090..124721696250874.9322293-CDS-E-siliculosus-1a_M_contig72:12090..12472Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig72 12091..12472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig72.15344.1

>prot_E-siliculosus-1a_M_contig72.15344.1 ID=prot_E-siliculosus-1a_M_contig72.15344.1|Name=mRNA_E-siliculosus-1a_M_contig72.15344.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=203bp
MRGSDGKGASPVPPSDDGHQQRQVSADGLGGWVMPEVGPDGEAKFKMVGP
TGNCYGYSIARSGAYRFGLHPRSEGRRPPFKHVAHKRGRDADASDEAPAA
KRRRCPKLSEEEVIAILSQRLAELEKAEHEAARAKEAAAAAAAARAAAAA
QAAAAAAAAVTAAAADAAAAAVATAKVVAVTAAASAAKTAALQAAEALAG
KEA
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mRNA from alignment at E-siliculosus-1a_M_contig72:6722..12472+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig72.15344.1 ID=mRNA_E-siliculosus-1a_M_contig72.15344.1|Name=mRNA_E-siliculosus-1a_M_contig72.15344.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5751bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig72:6722..12472+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGGGGCAGCGATGGCAAGGGGGCATCTCCCGTACCTCCTTCTGATGA
CGGACATCAACAGAGGCAAGTTTCAGCGTAGTAAGGGGAAAAGAACAAAA
CCACAGCAGCTAGCAGCAGCAGCAACCACTGACTGCTTCAGAGGTCGGCG
GTATTTGCAATAACCAAGCAAGCAAGCGTAACAGAAAAGAGAGGAAATTA
CTGTTCTTGATCCTCTGTGTTTTCTGGTATCGTTATCTTTGTTGTGTCCC
TTTGCTGTTTGTGTGTGTTCTATTACCATTCGTACCAATACTATATTAAA
TATCTGTCTGAAACAAAATATGTTGCCGCCGGTGGATGTTGTTACCAAAG
GTTATCACCAGGTGCATATTAAACATACATACATGTAGTGTACCAGATAC
TAAATGAAAAAAAATCTTGTGCTCCAGGCGTTTCGGAGCTTCATGTATAC
CACCGCCAAAACCACACAGACAGACAGACACTGATTTTTATCTCTATTTT
TTTTTTTTTTTATCGGTTTCCGAGGGCTTTTTTGTCGACCGGCGGGTGCG
GTAGCTGTTCTTTTGTTTAAGAAAGTACACATAACCTCACGGAAAGACTA
CCCGTTCGAGATATAGCCTCAGTCGAATGGGAAATGGTGAAGTCTTTTCA
GTAAGTGGACTGAAACCGACTGGAGACTTGTTGTATCATTTTGTTTTCTT
TTTCCGAGTGGTTTGTACCCTATTTTTGTTTGTTTCCCCGCGGCATCGTC
GTATGTACCGGGTTTTTGCGACCACGGGCTCCCCATTTTTGTGGACTACA
GAGCTAATGTGCGAAACAACAAAACAAACAGCAGTATATATACGATGGGG
TGCAAGGGATGTCCGGGTACCATTTGAATCTCCAACAAAAAGAACGTAAA
TACGACTAAAATCACACGTTGTCGCGCTACCCCTTGCTTGGCTCCCAAGA
GTTTTCCCAACTAAAACGAACAAAATTTCAATAACTGATGTATGCAAGTA
GTTTTTACACGTACGTACCCAAAAGAAATAAATGTGTATGTTGCGAATAC
CTTTGAGATTGGGATGGGATTGGGAAAGGGTCAGAAGTACTGTATGTGAA
GAAACGCGGCGAAGACTCGGGCCGATGCATGTTGTTGTACCTTGGATTGA
GTGGTCATGCGACCTTTTCGCAAATAAAGCATGTGGTTGGTGGTATCTGG
GTGAGAATGTACCACTTAGGGGCAGGTACAATAAAAAACGGTGAAGAAAA
TCGAACCAAGCATGCATGTACATATGCTAGACAGTCTATGTCTCAACGAG
GAAGTGTGGTAACCAACAATAAATAACAAACGGGGATGGATATATGTTAA
AACAAACTATCAGCTTCCGATGCAGGCGAGTGAAACGAAGCTTGTTGTAG
ACAAAGGAACACGGTCAATAGAGAGCAAAACAAGATGGCTGGAGTATAGA
CAGTGAGAGGTCCCAGCGCATGCACGTCAATGGATCCCGAAGCGTTGCTC
TCATGCGTCCTCCACTAATGTCATCAGAACTCTTCTGTTCGAACAACCAG
TAGCAGGCAGGTCCCCTGCCTACTGCTCAGTTCACTTGACCGTTAAGCAA
GGGCTCTAAATGCATCTACGGTGCGAATGAAGGCTCTGAACCCTAGCTCC
GCTTAGCTGGAAGAGGCAGTATTCCGGCATTCCTTGGCACGATCTACTTG
GTGTATTTGAGTATTGAACTTTACGGTCGGGTTGGACGGGTGTTGGACGT
GACCCCGTACGCCTCAAAGTTGCACTATGTAGTATCCTAGACATTGAATA
CCTGGAGATGACAGTACTCCGGCTGTTCAAGGTACGATGTACCTGCATAA
TTTCGTTTGATGTCGGGTAGGACGGGTGTTCGGCTTGACCCGCCCGTCTC
CCTTGCCTCGGCTGGCTTCAACAGTTGCACCCACCTTGTAGACAGAGGAA
CATGGTCAATAGAGAGCACAACAAGATGGCTGGAGTATAGACAGTGAGAG
GTCCCAGCGCATGCACGTCAATGGATCCCGAAGCGTTGCTCTCATGCGTC
CTCCACTAATGTCATCAGAACTCTTCGGTTCGAACAACCAGTAGCAGGCA
GTCTCCTGCCTGCTGCTCAGTTCACTTGACCGTTAAGCAAGGGCTCTAAA
TGCATCTACGGTGCGAATGAAGGCTCTGAACCCTAGCTCCGCTTAGCTGG
AAGAGGCAGTATTCCGGCATTCCTTGGCACGATCTACTTGGTGTATTTTG
GTATTGAACTTTACGGTCGGGTTGGACGGGTGTTGGACGTGACCCCGTTC
GCCTCAAAGTTGCACTATGTACTATGTAGTATCCTAGACATTGAATACCT
GGAGATGACAGTACTCCGGCTGTTCAAGGTACGATGTACCTGCATAATTT
CGTTTGATGCCGGGTAGGACGGGTGTTCGGCTTGACCCGCCCGTCTCCCT
TGCCTCGGCTGGCGTCAACAGTTGCACCCACCTTGTAGACAGAGGAACAT
GGTCAATAGAGAGCACAACAAGATGGCTGGAGTATAGACAGTGAGAGGTC
CCAGCGCATGCACGTCAATGGATCCCGAAGCGTTGCTCTCATGCGTCCTC
CACTAATGTCATCAGAACTCTTCTGTTCGAACAACCAGTAGCAGGCAGGT
CTCTTGCCTACTGCTCAGTTCACTTGACCGTTAAGCAAGGGCTCTAAATG
CATCTACGGCGAATCGTGGCTCTGAACCCTAGCTCCGCTTAGCCGGAAGA
GGCAGTATTCCGGCATTCCCTGGCACGATCTACTTGGTGTATTTTGGTAT
TGAACTTTACGGTCGGGTTGGACGGGTGTTCTGCTTGTCCTCCTGCGTCC
GCAGTTGGACCCACATCGCGGGTTCTAACGGGGTGCGAGTCAAATCCGAA
GCATTTCACCTATAATCACCCAATATATATTCTGAGGGATGCTGTAATCC
GTCAAATAACGCTGCACTCGTTGATACTTGGTCGACCCTGTTTTTTTCGA
CGCGGTGAACATCTCTAAATAATCTGGCTATAACGACATGTCATCGCGGA
TCAGCGCCACACAGCATACAACGGAAGATTTGGGGCTACAAGACTAGACT
ATAGCATCCAACGATGCACATTATATCACTTTTTGGGGGTCTTCCCGCGG
GACGTTCCGCGGATAGTTCGGAAGGTCCCGCGGGATGGATGAAGTTTTGC
GGAAAGTCCCACGGAAAATGTCTGTTTTCAACGGAGCTTCCGACTTCCCG
CCGGAACCTTTCGCGGGACTTTCCACTTCCCGCGGAAAGTGGCATATTCC
GCGGAATACAGAAAATATTTGATTGGTTGTAGCAGTGAAGGCAGTATTGT
CTATCTCTATGTATCACAGGGGATTTCTTGCGGTGTGGGTACAGCTGAGG
GCCAGTCCTGTTCTGGCCTCTATGCCTTCCCCGTTTATGTCGCTCCTCGA
CCCAATCCCCGCCTCTCTCTGGCCATCCCCCCCCCCGCCCGCGCCAAAAT
GATTTTCATTGTTTGACACTACAATGGACATACATGTCCATGTGCACTCG
AGAGACGCCCGTGGACGTCCTCCGAGGACGTCGCCCGTGGACGGTGGTCC
ACGGACGCGTCCACCCAAATTCGTGGATGGTCCACGGACACGTCCATGGA
CAAAGTCAGTCCACGGACGAGATGGGGTACCGAGCCCTGGTCCGCAGTGA
TGAATGAAGCGTTACTTCGAGTAGCCATCGTGGTCAAAGTAGACTCTTTG
CTCAGCGCTAGATGGTTCGTATGACCATCAGCGCTGACCCTTGCACGTAT
TCCGTTTGCTTTTCCCCTCCGCACTGTGGCTATGTTCGCAATCGTGCAGT
GACGGATTGGGCGGATGGGTGATGCCCGAGGTCGGTCCAGACGGGGAGGC
CAAGTTCAAGATGGTCGGCCCAACTGGGAATTGCTACGGGTATTCCATAG
CCAGGTACGCACGCACGTGGTTACCGACGAACGATAGCATCCCTCGCTTC
GTGGTCGATGTGACGAATGCAGCATCGTCTCCTAGAATGAGCTGTGTCCC
CTAAAGAGATGTGTCAGAACCACAAAAACTCTCTGCTGTAGTCAACCCAG
TGGTATATCCAGGAACGAGAGGAAACCCCGTTGACCCACTCTTTGTCTTG
AGTCAACCCTTGTCTAGCTTTACGGCGCCCACACGCTGCCATTGGAAGGC
GAACATACATGGACCTTTGTTGTAGAATTCGAAGCATTTACCGCCATGAC
AGGCGACGTCGTTGTTGGTACTGCTGTTGGTGGGGTTTATCGCTCAAATG
GCGTCGTATCTTCTTTGTATGGGCGAGGTAGAGATCGGTGTGCTACTGAC
AAGGCTTGGGGGGTGAAAATCGGGGGGCGAAGTGACACAGCCAGTTTGTT
CTTCAGACATTGCGCCTATTTTCTCTCCAAATATGTAAAGTCTCCGGAAC
TAGCGTGCATAACCCGAATGTGACTCACGCGAGACTAGTTACACTCTCGT
CGTTAGGGATAGAGTTAAAGCTGGCTGTGAGCGTCTGAAGCGCGTTTTGC
AAACTGGGGTAGGCGTACCAAGAGTTAACATGGTTCCAGCGGGCACGAAA
TCTCAGGATATTCTCATATCGTTTCCCATCGCGCGAGTTTTGCGTGTCCA
CCGTAGATGAGCGAGAGATCACGCGGACGTCCCGCACTGTCTCGCACCCG
TCCGTGATTGCCTGGTTCACGCCGTCTTTCTGTCAAGTTGGACAAATGTT
TTCTCAACCAGTTCTAAGAGCCGCTTTTGTTTGGGGTACCTCAACCCAGA
TCTAAGTTCTACTAGAGCATTCCCAGCTAGAGTCATATGAAGGAACAGGT
TTCACCTGTGGGGCGAGGACACAACCATGCCAGTGAAAGAAACATCAGTT
TGGGCGCGTATCCAAAGTCAAAGTAAACTTTTCTTGGTGTGTTGCAATAC
CTTGCTCCTGCAGACAGCCCCTTGCGCATCGTATGCAACTCGCTAGATCG
GGCGCATACCGCTTCGGTTTACACCCTCGAAGCGAAGGGCGGTGTTGCAG
GGGTGCCCTACTACATACCGCCCAACCGCTACAAGCGTTTGCCGAACCCT
CGAACCGCTCGTTTGTTGCAAGTCGTGTGGCCCACCCGAAAAGTGCTATG
CTTCGAAGTCACGCCATTGTTGCTTACCCCGCTCCCATTCGCCCAACCAA
TGTCCAGCAACATTCGCAGCGCTAAAAAAGAGCTGCTCGCGATACTACGT
GGCGAGCAGCAGCTCACCGCGACAAGCGATGGCACCGGCGACCCCGCCTG
CAGCGCCGAGACGTCAATCCCGACCCGATTTCTGTGCGATGTCGCAAGCG
GCATCTCTGGGAGCGACAGACGACCACCGTTCAAACACGTTGCGCACAAG
CGAGGACGGGACGCCGATGCCTCCGACGAAGCCCCAGCCGCCAAGAGGCG
TCGGTGTCCGAAGTTGTCCGAGGAAGAGGTCATTGCCATACTTTCCCAGC
GGCTGGCAGAGCTGGAAAAAGCCGAACACGAGGCAGCCCGCGCGAAGGAA
GCGGCAGCGGCAGCGGCGGCAGCACGTGCGGCGGCGGCAGCGCAAGCTGC
GGCGGCGGCAGCGGCAGCTGTGACGGCGGCAGCGGCAGATGCGGCGGCGG
CAGCGGTGGCCACAGCGAAGGTGGTGGCGGTGACAGCGGCAGCATCGGCG
GCAAAGACAGCAGCACTCCAAGCGGCGGAAGCTCTTGCGGGCAAGGAGGC
T
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig72:6722..12472+

>mRNA_E-siliculosus-1a_M_contig72.15344.1 ID=mRNA_E-siliculosus-1a_M_contig72.15344.1|Name=mRNA_E-siliculosus-1a_M_contig72.15344.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1218bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig72:6722..12472+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGGGGCAGCGATGGCAAGGGGGCATCTCCCGTACCTCCTTCTGATGA
CGGACATCAACAGAGGCAAGTTTCAGCATGCGGGGCAGCGATGGCAAGGG
GGCATCTCCCGTACCTCCTTCTGATGACGGACATCAACAGAGGCAAGTTT
CAGCTGACGGATTGGGCGGATGGGTGATGCCCGAGGTCGGTCCAGACGGG
GAGGCCAAGTTCAAGATGGTCGGCCCAACTGGGAATTGCTACGGGTATTC
CATAGCCAGTGACGGATTGGGCGGATGGGTGATGCCCGAGGTCGGTCCAG
ACGGGGAGGCCAAGTTCAAGATGGTCGGCCCAACTGGGAATTGCTACGGG
TATTCCATAGCCAGATCGGGCGCATACCGCTTCGGTTTACACCCTCGAAG
CGAAGGGCGATCGGGCGCATACCGCTTCGGTTTACACCCTCGAAGCGAAG
GGCGACGACCACCGTTCAAACACGTTGCGCACAAGCGAGGACGGGACGCC
GATGCCTCCGACGAAGCCCCAGCCGCCAAGAGGCGTCGGTGTCCGAAGTT
GTCCGAGGAAGAGGTCATTGCCATACTTTCCCAGCGGCTGGCAGAGCTGG
AAAAAGCCGAACACGAGGCAGCCCGCGCGAAGGAAGCGGCAGCGGCAGCG
GCGGCAGCACGTGCGGCGGCGGCAGCGCAAGCTGCGGCGGCGGCAGCGGC
AGCTGTGACGGCGGCAGCGGCAGATGCGGCGGCGGCAGCGGTGGCCACAG
CGAAGGTGGTGGCGGTGACAGCGGCAGCATCGGCGGCAAAGACAGCAGCA
CTCCAAGCGGCGGAAGCTCTTGCGGGCAAGGAGGCTACGACCACCGTTCA
AACACGTTGCGCACAAGCGAGGACGGGACGCCGATGCCTCCGACGAAGCC
CCAGCCGCCAAGAGGCGTCGGTGTCCGAAGTTGTCCGAGGAAGAGGTCAT
TGCCATACTTTCCCAGCGGCTGGCAGAGCTGGAAAAAGCCGAACACGAGG
CAGCCCGCGCGAAGGAAGCGGCAGCGGCAGCGGCGGCAGCACGTGCGGCG
GCGGCAGCGCAAGCTGCGGCGGCGGCAGCGGCAGCTGTGACGGCGGCAGC
GGCAGATGCGGCGGCGGCAGCGGTGGCCACAGCGAAGGTGGTGGCGGTGA
CAGCGGCAGCATCGGCGGCAAAGACAGCAGCACTCCAAGCGGCGGAAGCT
CTTGCGGGCAAGGAGGCT
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