mRNA_E-siliculosus-1a_M_contig7.15149.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig7.15149.1
Unique NamemRNA_E-siliculosus-1a_M_contig7.15149.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15149.1 vs. uniprot
Match: D7FN93_ECTSI (Type-4 uracil-DNA glycosylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN93_ECTSI)

HSP 1 Score: 532 bits (1370), Expect = 3.720e-182
Identity = 286/343 (83.38%), Postives = 296/343 (86.30%), Query Frame = 3 
Query:    6 VDIANSSRLSAVSRSCKYRRHFGSSVL--HIIGEWSETRFMALRHTAQHLLRDMVAPPIKTAVAVFTLFWGNTLAWQAPTSTRSSTNSLVSRASF---DTCGSAAPFMRRRCATTQQNRAMKAATTSGIGVSMGGDAEGHRAFVEKLLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFIGRSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLGASSTKALLPHETRGITRARGQWADPVALAEIHDGRLTDKLIMPWFHPSYLLRNSGERSRQEGGVRWHARNDLRAVRDVVRSIQEE 1019
            VDIA SSR     R        G SVL   ++   +E R      TAQHLLRDMVAPP+KTAVAVFTLF G +LAWQAPTS RSSTNSLVSRAS        SAAPFMRRRCATTQQN A+KAATTSG G+SM GDAEGHRAFVEKLLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPF+GRSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLGASSTKALLP+ETRGITRARGQWADPVALAEIH GRL D LIMPWFHPSYLLRNSGERSRQEGGVRWHARNDLR VRDVVR IQ+E
Sbjct:    6 VDIAQSSR-----RFHGVANKGGISVLPFSVLEIGAEARLWHFA-TAQHLLRDMVAPPMKTAVAVFTLFSGISLAWQAPTSPRSSTNSLVSRASSCCRTRSRSAAPFMRRRCATTQQNMAIKAATTSGFGMSMRGDAEGHRAFVEKLLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFVGRSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLGASSTKALLPYETRGITRARGQWADPVALAEIHGGRLADMLIMPWFHPSYLLRNSGERSRQEGGVRWHARNDLREVRDVVRGIQQE 342
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15149.1 vs. uniprot
Match: A0A835YMS9_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMS9_9STRA)

HSP 1 Score: 210 bits (534), Expect = 6.170e-59
Identity = 107/195 (54.87%), Postives = 133/195 (68.21%), Query Frame = 3 
Query:  408 HRAFVEKLLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFIGRSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLGASSTKALLPHETRGITRARGQWADPVALAEIHDGRLTDKLIMPWFHPSYLLRNSGERSRQEGGVRWHARNDLRAVR 992
            H      LL LTGDPLE  GGR+VV+RGDP A LM++GEAPGA ED  G PF+GRSGQLLD +L+A GFDPE ++YVSNIVRRRP +NR PT  E+ +Y P+LLEEI LV+P +I+  G  S +A+L +E RGIT+ RGQW  P    ++          MPWFHPSYLLRN    ++ EGG +W    D + VR
Sbjct:   60 HAEMTAALLALTGDPLEPAGGRIVVYRGDPQAKLMVVGEAPGAMEDETGKPFVGRSGQLLDAILKAAGFDPETDLYVSNIVRRRPPENRDPTTAEIAYYRPWLLEEIRLVNPAIIITTGRWSMRAVL-NERRGITKVRGQWYAPGTTPDLPAATWA----MPWFHPSYLLRNP---TKDEGGPKWLTWVDAQEVR 246
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15149.1 vs. uniprot
Match: A0A3M1EZS2_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A3M1EZS2_9CHLR)

HSP 1 Score: 206 bits (525), Expect = 2.840e-58
Identity = 107/195 (54.87%), Postives = 135/195 (69.23%), Query Frame = 3 
Query:  408 HRAFVEKLLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFIGRSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLGASSTKALLPHETRGITRARGQWADPVALAEIHDGRLTDKLIMPWFHPSYLLRNSGERSRQEGGVRWHARNDLRAVR 992
            H+A VE L  LTGDPLE  GG +V++RG+P+A LM+IGE PGAEEDRL  PF+GRSGQLLD +LRAV FDPE +VY++N+V+RRP +NR PTPEE++FY P+L EEI LVDP +I+L G  +   +L  E RGIT+ RGQW +         GR     IMP FHP+YLLRN          + W   +D+RAVR
Sbjct:   30 HQALVEALENLTGDPLEPWGGNMVIYRGNPAAKLMVIGEGPGAEEDRLRKPFVGRSGQLLDKILRAVHFDPETDVYITNVVKRRPPENRDPTPEEINFYAPYLFEEIRLVDPKIIMLTGRYAMLTILG-EKRGITKVRGQWFE-------RGGRW----IMPMFHPAYLLRNPQRTPGSPKALTW---DDIRAVR 209
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15149.1 vs. uniprot
Match: A0A7C3BN30_9CHLR (Type-4 uracil-DNA glycosylase n=2 Tax=Chloroflexi TaxID=200795 RepID=A0A7C3BN30_9CHLR)

HSP 1 Score: 203 bits (516), Expect = 2.910e-57
Identity = 103/195 (52.82%), Postives = 134/195 (68.72%), Query Frame = 3 
Query:  408 HRAFVEKLLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFIGRSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLGASSTKALLPHETRGITRARGQWADPVALAEIHDGRLTDKLIMPWFHPSYLLRNSGERSRQEGGVRWHARNDLRAVR 992
            H+  VE L  L GDPLE+ GG +V++RG+P+A LM+IGE PGA EDRL  PF+GRSG+LLD +L AV F+PE++VY+SN+VRRRP  NR P P+E+ FY P+L EEI L+DP +I+L+G  +   +L  E RGIT+ RGQW          DGR     IMP FHP+YLLRN G+R      + W   +D+RAVR
Sbjct:   11 HQELVEALNNLGGDPLEQWGGNIVIYRGNPAAKLMIIGEGPGANEDRLRKPFVGRSGKLLDQILSAVNFNPEQDVYISNVVRRRPPKNRDPLPKEIAFYAPYLFEEIRLLDPKIILLIGRHAMMTILK-EKRGITKVRGQWFQK-------DGRW----IMPMFHPAYLLRNPGKRPGSPKSLTW---DDIRAVR 190
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15149.1 vs. uniprot
Match: A0A1W9W486_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineaceae bacterium 4572_78 TaxID=1972460 RepID=A0A1W9W486_9CHLR)

HSP 1 Score: 190 bits (482), Expect = 2.510e-52
Identity = 97/195 (49.74%), Postives = 129/195 (66.15%), Query Frame = 3 
Query:  408 HRAFVEKLLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFIGRSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLGASSTKALLPHETRGITRARGQWADPVALAEIHDGRLTDKLIMPWFHPSYLLRNSGERSRQEGGVRWHARNDLRAVR 992
            H+A VE L  LT DPLE  G  +V++RG P A LM+IGEAPGAEED++G PF+GRSGQLLD +L+AV F+ E ++Y++N ++RRP +NR P  EE+++Y PFL EEI LVDP +I+L G  +   +L  E RGIT+ RGQW +         GR     +MP FHP+YLLRN  +       + W    D+RAVR
Sbjct:   15 HQALVETLKNLTDDPLESTGSNMVIYRGYPKADLMIIGEAPGAEEDKIGKPFVGRSGQLLDKILQAVHFNIETDIYITNTLKRRPPNNRNPKQEELEYYFPFLAEEIRLVDPKIILLAGKYAMLTIL-QEKRGITKVRGQWVE-------QGGRW----VMPIFHPAYLLRNPRKTPGSPKALMWE---DIRAVR 194
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15149.1 vs. uniprot
Match: W7TG57_9STRA (Type-4 uracil-DNA glycosylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG57_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.080e-51
Identity = 100/196 (51.02%), Postives = 133/196 (67.86%), Query Frame = 3 
Query:  405 GHRAFVEKLLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFIGRSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLGASSTKALLPHETRGITRARGQWADPVALAEIHDGRLTDKLIMPWFHPSYLLRNSGERSRQEGGVRWHARNDLRAVR 992
            GH  FV+ L  L GDPL+ +G RVV+ RG+  A +M+IGEAPG  ED  G PF+GR+G+LLD +L +VG D E  VY++N+V RRP +NRTP+  E+ +YLP+L+E + LVDP +I+L GA + KALLP E +GITR RGQW +     E        +L+MP FHPSYLLRN    SR+  G +W    D++AVR
Sbjct:   82 GHADFVQALQGLRGDPLQAEGTRVVIHRGNAGAKIMVIGEAPGETEDVEGKPFVGRAGKLLDAILASVGLD-ESSVYITNVVLRRPPNNRTPSASEVAWYLPYLMENVRLVDPLIILLAGACACKALLPLEKQGITRIRGQWFERRFGTEGGLDGQGSRLVMPIFHPSYLLRNP---SRKVEGPKWLTWQDIQAVR 273
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15149.1 vs. uniprot
Match: A0A7C3CIK3_9CHLR (Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3CIK3_9CHLR)

HSP 1 Score: 187 bits (475), Expect = 2.880e-51
Identity = 97/197 (49.24%), Postives = 125/197 (63.45%), Query Frame = 3 
Query:  402 EGHRAFVEKLLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFIGRSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLGASSTKALLPHETRGITRARGQWADPVALAEIHDGRLTDKLIMPWFHPSYLLRNSGERSRQEGGVRWHARNDLRAVR 992
            E H A +  +  LT DPL   G R+V++RG+P A L+++GE PGA EDRLG P++GRSGQLLD +L A GFD +  VYV+N V RRP DNR PT  E+DFYLP+LLE I +VDP VI+L G  S + +L  E RGIT+ RG W            +  D+ IMP FHP+YLLRN      +   + W    D++AVR
Sbjct:   13 ETHAAIIRAMEALTDDPLYPTGNRMVIYRGNPQADLLIVGEGPGANEDRLGKPYVGRSGQLLDKILEAAGFDSQNGVYVTNTVFRRPPDNRDPTQAELDFYLPYLLELIRIVDPKVILLTGRFSMRQILG-EKRGITKVRGTWY-----------QRHDRWIMPMFHPAYLLRNPSRAVGKPKSLTWQ---DIQAVR 194
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15149.1 vs. uniprot
Match: C1FF23_MICCC (Type-4 uracil-DNA glycosylase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FF23_MICCC)

HSP 1 Score: 187 bits (474), Expect = 1.240e-50
Identity = 93/188 (49.47%), Postives = 127/188 (67.55%), Query Frame = 3 
Query:  429 LLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFIGRSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLGASSTKALLPHETRGITRARGQWADPVALAEIHDGRLTDKLIMPWFHPSYLLRNSGERSRQEGGVRWHARNDLRAVR 992
            L +LTGDPLE DGGR+V FRGD +A +M+IGEAPGAEED+LGVPF+GR+G+LLD++  +V    +R  YV+N+V+RRP++NR PT  E+++Y  +L EEI L+DP +IV  G  S + LL     GIT+ RG+W D        DGR+    +MP FHPSYLLRN  +       + W   +D+R V+
Sbjct:   62 LRSLTGDPLESDGGRIVTFRGDTNARVMIIGEAPGAEEDKLGVPFVGRAGKLLDEIFASVTLSTDRHCYVTNVVKRRPLNNRDPTAREIEWYRGYLREEIRLLDPAIIVCTGRHSMRTLLGKNCEGITKIRGRWFDV-------DGRV----VMPMFHPSYLLRNPQKTPGSPKALTW---DDIREVK 235
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15149.1 vs. uniprot
Match: A0A7S2V4W6_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4W6_9STRA)

HSP 1 Score: 185 bits (469), Expect = 6.070e-50
Identity = 99/190 (52.11%), Postives = 126/190 (66.32%), Query Frame = 3 
Query:  417 FVEKLLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFIGRSGQLLDDMLRAVGFD--PEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLGASSTKALLPHETRGITRARGQWADPVALAEIHDGRLTDKLIMPWFHPSYLLRNSGERSRQEGGVRWHARNDL 980
            F +   ++ GDPL+  GG VVVFRG+P   +M++GEAPG EED+  +PF+G++GQLL+ ML   GFD  P+ EVY++N+V+RRP +NR PTPEE+ FYLP L EEI LVDP +IV  G+ S KALL  E RGIT+ RG W D              K  MP FHPSYLLRN   RS+++   RW   NDL
Sbjct:   64 FFQVTQSMEGDPLD-GGGSVVVFRGNPRGRVMVVGEAPGEEEDKQKLPFVGKAGQLLEKMLTEAGFDTGPQGEVYITNLVKRRPPNNRNPTPEEVSFYLPLLQEEIRLVDPDIIVCAGSFSMKALL-EEDRGITKVRGTWYD-----------YKGKKCMPIFHPSYLLRN---RSKEKNQPRWLTWNDL 237
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15149.1 vs. uniprot
Match: A0A7S2S1J0_9STRA (Type-4 uracil-DNA glycosylase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1J0_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.610e-49
Identity = 96/202 (47.52%), Postives = 131/202 (64.85%), Query Frame = 3 
Query:  390 GGDAEGHRAFVEKLLT----LTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFIGRSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLLEEIGLVDPHVIVLLGASSTKALLPHETRGITRARGQWADPVALAEIHDGRLTDKLIMPWFHPSYLLRNSGERSRQEGGVRWHARNDLR 983
            GG+ E   +  E+L +    L+GDPLEE GGRVV +RG+P A ++++GEAPGA ED LGVP++GR+G+LLD +L A GFD E +VY +N+V+RRP +NR PT  E+ +Y P LLEE+ LVDP ++V  G  S + LL  + +GIT+ RGQW     L EIH         MP FHPSYLLRN   ++     + W    ++R
Sbjct:   18 GGEEEVQFSSFEELASALAGLSGDPLEEFGGRVVHYRGNPGAKVVVVGEAPGATEDELGVPYVGRAGKLLDQILTAAGFDVEEDVYFTNVVKRRPPENRDPTAAELRYYSPLLLEELRLVDPWIVVCTGRFSMRTLLDVK-QGITKVRGQWFPLPGLPEIHG--------MPMFHPSYLLRNPSRKAGSPKSLTWVDAQEIR 210
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN93_ECTSI3.720e-18283.38Type-4 uracil-DNA glycosylase n=1 Tax=Ectocarpus s... [more]
A0A835YMS9_9STRA6.170e-5954.87Type-4 uracil-DNA glycosylase n=1 Tax=Tribonema mi... [more]
A0A3M1EZS2_9CHLR2.840e-5854.87Type-4 uracil-DNA glycosylase n=1 Tax=Caldilineae ... [more]
A0A7C3BN30_9CHLR2.910e-5752.82Type-4 uracil-DNA glycosylase n=2 Tax=Chloroflexi ... [more]
A0A1W9W486_9CHLR2.510e-5249.74Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineac... [more]
W7TG57_9STRA2.080e-5151.02Type-4 uracil-DNA glycosylase n=2 Tax=Monodopsidac... [more]
A0A7C3CIK3_9CHLR2.880e-5149.24Type-4 uracil-DNA glycosylase n=1 Tax=Anaerolineae... [more]
C1FF23_MICCC1.240e-5049.47Type-4 uracil-DNA glycosylase n=1 Tax=Micromonas c... [more]
A0A7S2V4W6_9STRA6.070e-5052.11Type-4 uracil-DNA glycosylase n=1 Tax=Fibrocapsa j... [more]
A0A7S2S1J0_9STRA1.610e-4947.52Type-4 uracil-DNA glycosylase n=1 Tax=Rhizochromul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig7contigE-siliculosus-1a_M_contig7:1654852..1660516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size903
Model size2254
Exons6
Ec32 orthologEc-15_003440.1
Ec32 ortholog descriptionUracil-DNA glycosylase-like
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2EIJQ@1,2SNYZ@2759
EggNOG free text desc.UreE urease accessory protein, C-terminal domain
Seed eggNOG ortholog2880.D7FN93
Seed ortholog evalue7.1e-148
Seed ortholog score530.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig7.15149.1prot_E-siliculosus-1a_M_contig7.15149.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig7 1654971..1659284 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935932.6951756-UTR-E-siliculosus-1a_M_contig7:1654851..16549701622935932.6951756-UTR-E-siliculosus-1a_M_contig7:1654851..1654970Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 1654852..1654970 +
1696250853.0190597-UTR-E-siliculosus-1a_M_contig7:1654851..16549701696250853.0190597-UTR-E-siliculosus-1a_M_contig7:1654851..1654970Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 1654852..1654970 +
1622935933.5686128-UTR-E-siliculosus-1a_M_contig7:1659284..16605161622935933.5686128-UTR-E-siliculosus-1a_M_contig7:1659284..1660516Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 1659285..1660516 +
1696250853.0946355-UTR-E-siliculosus-1a_M_contig7:1659284..16605161696250853.0946355-UTR-E-siliculosus-1a_M_contig7:1659284..1660516Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig7 1659285..1660516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935932.712398-CDS-E-siliculosus-1a_M_contig7:1654970..16551971622935932.712398-CDS-E-siliculosus-1a_M_contig7:1654970..1655197Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1654971..1655197 +
1696250853.0323055-CDS-E-siliculosus-1a_M_contig7:1654970..16551971696250853.0323055-CDS-E-siliculosus-1a_M_contig7:1654970..1655197Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1654971..1655197 +
1622935932.7256942-CDS-E-siliculosus-1a_M_contig7:1656191..16563061622935932.7256942-CDS-E-siliculosus-1a_M_contig7:1656191..1656306Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1656192..1656306 +
1696250853.0462973-CDS-E-siliculosus-1a_M_contig7:1656191..16563061696250853.0462973-CDS-E-siliculosus-1a_M_contig7:1656191..1656306Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1656192..1656306 +
1622935932.7474601-CDS-E-siliculosus-1a_M_contig7:1656969..16571481622935932.7474601-CDS-E-siliculosus-1a_M_contig7:1656969..1657148Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1656970..1657148 +
1696250853.0591366-CDS-E-siliculosus-1a_M_contig7:1656969..16571481696250853.0591366-CDS-E-siliculosus-1a_M_contig7:1656969..1657148Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1656970..1657148 +
1622935932.7687001-CDS-E-siliculosus-1a_M_contig7:1657707..16578291622935932.7687001-CDS-E-siliculosus-1a_M_contig7:1657707..1657829Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1657708..1657829 +
1696250853.0674152-CDS-E-siliculosus-1a_M_contig7:1657707..16578291696250853.0674152-CDS-E-siliculosus-1a_M_contig7:1657707..1657829Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1657708..1657829 +
1622935932.783928-CDS-E-siliculosus-1a_M_contig7:1658630..16587221622935932.783928-CDS-E-siliculosus-1a_M_contig7:1658630..1658722Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1658631..1658722 +
1696250853.0758119-CDS-E-siliculosus-1a_M_contig7:1658630..16587221696250853.0758119-CDS-E-siliculosus-1a_M_contig7:1658630..1658722Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1658631..1658722 +
1622935933.325505-CDS-E-siliculosus-1a_M_contig7:1659116..16592841622935933.325505-CDS-E-siliculosus-1a_M_contig7:1659116..1659284Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1659117..1659284 +
1696250853.0850458-CDS-E-siliculosus-1a_M_contig7:1659116..16592841696250853.0850458-CDS-E-siliculosus-1a_M_contig7:1659116..1659284Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1659117..1659284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig7.15149.1

>prot_E-siliculosus-1a_M_contig7.15149.1 ID=prot_E-siliculosus-1a_M_contig7.15149.1|Name=mRNA_E-siliculosus-1a_M_contig7.15149.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=301bp
MALRHTAQHLLRDMVAPPIKTAVAVFTLFWGNTLAWQAPTSTRSSTNSLV
SRASFDTCGSAAPFMRRRCATTQQNRAMKAATTSGIGVSMGGDAEGHRAF
VEKLLTLTGDPLEEDGGRVVVFRGDPSASLMLIGEAPGAEEDRLGVPFIG
RSGQLLDDMLRAVGFDPEREVYVSNIVRRRPIDNRTPTPEEMDFYLPFLL
EEIGLVDPHVIVLLGASSTKALLPHETRGITRARGQWADPVALAEIHDGR
LTDKLIMPWFHPSYLLRNSGERSRQEGGVRWHARNDLRAVRDVVRSIQEE
*
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mRNA from alignment at E-siliculosus-1a_M_contig7:1654852..1660516+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig7.15149.1 ID=mRNA_E-siliculosus-1a_M_contig7.15149.1|Name=mRNA_E-siliculosus-1a_M_contig7.15149.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5665bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:1654852..1660516+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
TTGATGTCGATATCGCAAACAGCTCTCGGCTCTCGGCGGTTTCAAGGAGT
TGCAAATACAGGAGGCATTTCGGTTCTTCGGTTCTTCATATTATTGGAGA
GTGGAGCGAGACTCGCTTTATGGCACTTCGCCACACTGCGCAGCACCTCC
TGCGTGATATGGTTGCCCCACCGATCAAAACTGCTGTCGCAGTTTTCACC
CTCTTCTGGGGTAATACACTAGCCTGGCAAGCTCCGACCTCTACTCGCAG
CAGCACAAACTCCTTGGTATCAAGGGCATCCTTCGACACGTGTGGGTCCG
CTGCTCCATTCATGCGCCGCCGCTGTGCAACGACTCAGCAGAATAGGTGA
GCTTGTTTCGACTTTGGTTGCTTTGCCTGGGTGTGCTGCGTTTGTGTGAG
GCGTCTTGCTCATGTGTTGGATGTTGGTTTCCGTTTTCCCCGCTTTATCC
TCTCCGGTCAAGATCTCCGTAGATGTATGCTCAAGGTAGACTATGTTGTT
TGCGCAATGTCCCCAATATCCATGGTTGTTGTACGCCACCAGAGGGACAA
ATGGGTAGGACATTTCTCTCGATGGTGCTGAAGGTGCTTCAACCAAAGAG
CAAAAAAAACAACAACACCAGTGACAAGCGGCGTCCAAAGTCAAGGTCTT
TGGATCTTGAACCAAAAAAGCGGGGATATTTCTATTGTATCCCAGGATCA
TCACCAAAGTTTCGGTATTTGTTCTGGATCTGCCTGTCGTGTCTGCATTT
CGGAAATCTTTGGCAAACTAAAAGTGTGTGTGCAATCCATACATACATGC
ACAGAGTGTCCCCTACTTGGCGCAGGGTCTACGGATTAGTTGTTGATGCG
AGCAGTGTACTTATCCCAGAACGCATGTACCTCGCGCCAGCACGGCAGGG
AAAACTAACACACTACTGGTCTTTCGAGCCCAAGAAGTCGTGGGATTTTC
GAGGACATATCACCTTCGCTACAGTATCGCTAGAACACCTGTCGTAAATT
GGCATACAACCAGCGACCGAACGATTGGGGTATGAGAAGAGCTTGAGCCT
GTGGTGTCACACAGATTCACCAGGCTTGCACACGACGATCGGCATGGTTT
ACACGTACGGAACGCGCCACCACTTTCGAACCTCTAATTAGGGTATGTAC
TCCCACGGCAACAACAGGTTCTTTTTTTAGTGGATAAACTTCTCAACTGA
GCACCTGTTATTTGGACCACGTTCTTTGTTTTGGTTCCTTGAGCCTCAAG
TTCTTAATTACTACCACCGTCCTTACACACACGTGGAACGCTCTGTGTTC
GAATGCCTACTTCGTCTGTTTTGTGTTTCGGGTCCCGTAGGGCGATGAAG
GCGGCCACGACTTCAGGGATTGGCGTGAGTATGGGGGGAGATGCAGAGGG
CCATCGAGCGTTCGTCGAGAAGTTGCTGACGCTCACCGGGGACCCCCTCG
AGGAGGTACGGACGGGGACCCGCACATACTGGTGGTGTAGGGTCGTTGTT
CATCCTTCTTTTTCGCCGTCGAACCTTAGTGTTGCTGTCGTTGATATGCG
TTTGTTTTTCTCTCTGTTTTCTGAAACATCCACCATCCGTCTGTGACTTG
GGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCT
CTATCTCTCTCTTTAATGGTTTCGTCTGCTCGATGACCAGACCGCACGAG
CGCAGTCTCCGGTGCCCTAGCGAGTTTCAATTGACCGCACCCATTGCTCT
TGCAAGTGGACCCCGAACCGCGTGTTGGTCTATGTTGCCCCGAAGGCGTG
GTTGTGTGCCATCGTCGCAACCATTGGTGCGACGGCTCGCTTGTGCGTGT
CTGGTTGCTTGTACCTTCGAGCGCGTCGCGAAACCGCAGCTGTCCCCGAC
CGCGCACGCAGCCGGTCTCTCATTGCTTTCACGTTCAAGACAATCGCACG
CAGCCTCGGCGGCTAAAACGAGGTACATGGCCTCAAACAATCCGGACCCA
TCATTTCAGTAACCGTATTCTCCCCCAATCGGAAGCAAACATTTGTTGTT
GTCAAACGGGTTGGTTTTCACACTTGATTGACCAATAGAGAACTCGACGG
GCGTGGGGGGTTTCGTAGGACGGGGGAAGGGTCGTCGTTTTTCGCGGGGA
CCCCTCGGCGTCCCTGATGCTTATCGGGGAAGCGCCGGGCGCCGAGGAAG
ACAGGCTCGGGGTGCCGTTCATCGGTCGGTCGGGGCAGCTGCTGGACGAC
ATGCTGAGGGCGGTCGGCTTCGATCCCGAACGGGAGGTCTACGTCAGGTG
CGCTCGTTCGCTGCGGACTGAAGGGTGTAAATGGAGTGGACGAAATCTGC
TACCTTGTACCAGATATTACCTGGACCGTAGACTCAAGGGCCAAGACTAC
CTGGACTGTGGGCGCAAGGGCCAAGAACGAAAAGACGAAATCCACCTCTC
GGTACCAGATAATACCCGGAGAAGAACATCTCTCTGCGTGTTGATCGAGA
AACTGTACCTTTGCTTGTTGCTCTTCTTTGCGTTGAAAAGCAGTGCCTTC
AGCATTCCGGGCGCATGTTTATCTGCTACTAACTACCGTGGGGGTGCTGG
CGCTTCGGCCGCGGCCGGGCTCCTCTTGGGTGCGGTTAGTGTTGATCCCC
GAACGGGGCGGTCAATCTAGGTAGGTGTAGATCCTCGTGAGGCTACAACT
TCGAAAGGACGCGGATAGACGCCGTGCTCGCAGTGTCCCACCACCAGTTA
CCTAAAGGACGAAGACCTACCTGCTAAGCGTACCGTGTTGTTTTGCTGCG
CAACAATCTGCGGTTCTCTAAAAGCCTGTCTCATGCCTGTCCCCCTCGCA
CCGCAGCAACATCGTGCGGCGGAGACCGATCGACAACCGAACGCCTACCC
CCGAGGAGATGGACTTCTACCTGCCGTTTCTCCTCGAGGAGATAGGGCTA
GTCGACCCCCACGTCATCGTACTGCTTGGTACGCCTGCCCTGTTTTCTGT
TCAAGGGTTGTTGTTGTCGGTGTTGATGATGCCCGTGCGGTTAGGCTGCT
GACGCTCGTGCGGTTAGGCTGCGGGTCCCCGTATACGTTACTACAAAAGT
GGTCCTGGACTTGGAACGAGTGATATTCTATATGTGCTTCTCCGTCTAGG
CATAAACTCTGGATAGTTCTCGAGCCTATTCCGTTGTAGGGTTTCTCGTC
CCCATTCCATAGACTGGCGTCTCATCATCTTCCCATAGAAATCAACGGGG
TTATCCGTCGTGTGGGATGTTGCCATCGACCGTAGAACCCGGCTTTGCTG
TGTCGTGGGTTACATTTTCAGCACCGATAGGGCTAGGGTAAACGTTGAAC
GGAAGCGCCATCTCCAAACAAAACGCTTGGGAAACCAGATGGCAGAGGGA
GTAGGAAAATGGGCAAATCAGAATTTAACCTGTCCAGTCTAGAATGGCGA
GCGCTGCATCTGCCTACATACCACGAGAGCTTGAGTACGGGCAGGAAAAA
CAAGAAACAGTCGTTTATTCATGGGATGGTTCGTACTAAGCAGGTTACTC
CTAGTCTCCAAGTTTCGTCGGAGACGCGATTCCCTCCTGTCGATTTCGCG
CTGATATTTATGGCAGCAAAGGGTCGAAATCCTAACCTCTGATGGAGGTG
TAAGCTAAATGATTTCGGAAGTATCGGTGCTTTGTTCTTGAGAGGAAACA
GAAGCACCGGTCAACGTTGAAGTTGCGAAGGAAAACCCCGAATAGGAAGT
AACCCCCTTCCCCATCCCACCCCATCCAGGCGCTAGCTCAACCAAGGCGC
TCCTGCCGCACGAGACGCGGGGCATCACCAGGGCGCGAGGGCAGTGGGCG
GACCCTGTAGCTTTGGCCGAGGTAATCGTTGCCGCAGCTCGAACACCCGC
CACCCGTTGCTGTAACTAGCACTTCGGGCGGCGCTAAGCGAAACGCTGGC
CGTAGCCCGCGGAAGTCAGAGCTCTGGCCCGGGGTATTCCTGTTCGTAGC
CCGCTGGAGTAGCTCCCAGGGCTTACCACCATTCCGTCGTGACCCTGACG
GACCCAAGGAAAGCCCACGAGTCTTTGACCATACCTAGAACAACGACAGA
TTTACCTACGGCTTCACTATATATGAAATTCTTCGAATGCACATCATGGT
TTCTCTTCGTGTTTCCCTGTCCCTCTTATTCGCTTGCACCGCGACCCCCT
ACTGTAGTCCCGGCTCTAGATTTTAACTCCTGGACCCTCCCCATGCACAA
CCACACTGAAATCAGATACACGACGGCAGGCTCACCGACAAGCTGATCAT
GCCCTGGTTCCACCCCAGCTACCTCCTTCGCAACTCGGGGGAGCGCAGTC
GGCAGGAGGGAGGCGTGCGATGGCACGCGAGAAACGACCTAAGAGCAGTC
CGCGACGTGGTTCGCAGCATTCAGGAGGAATGATCCCTTCCGGCATATAT
ACATACGTAGGCCGGGGTAACGTCGGTACGTAGCTGCCATGTGCTCCGTT
TCTGTTTTTTGGGCTTTGCTGTGCTTTGGTGATGGTGCCTCGGCGGCGTA
CCGGGGACAACCCTGCGTGAGGTCGGCGACGATGTTGGTTGCGCCCAGGA
CGTGGGGGTAGACACGATGCCCGGCCGATAGGCAACTTGCTGCTCAGCTA
CTACGTGTTCTAGAACAGCCCTGGTTGGGCGGGTTATATACTGTTTGTCC
GTTTGTTTTCGTGGTAGAGGTAGACTTTATCCGACATGGACAAAAAAGTA
CTCTCAGACCAATCGAATAAACTCACCAGACCTATTGCTTGGCTTCAGTA
TCCTTTACGCGTGAAGGCCGCATTGTCGCAGTGCTTCCCGTAAACATTAT
TATCTCTTATGTTTATATTATAGTGTAGGTCCTCGGGTGTTGTGGTGACG
GAGGACCGCCGTACAACGACGAAGCGAAACGTTATCGTGGCCGGCATGAA
CATCTTTTGACCTTTGGCGATGTCCTACGAACGCAGGAAGTACTCGACGC
ACGCTGCTGTTACTCACGACAATACGAGAAACACGACAGGGTGGTTTTCA
CTGGGGAAAGTCAAGAACACCGCCAGAGGGGTCCCCCGATTCGCCCTGTT
GGCTTCATGCGACCGTGCGCCGAAGAAGTGAATGCATGCGTCGTCAGGGT
AAATTGATGCTGTTTGATGGTAACATGGCAAACCAGTTTGTATCTGGCGG
GTGAATTTTTTCCGAGTACATACTGCTGTATACAAGTTTGTTTTTTTCCC
CCAGTGCAGTGGCTCCTGCTGGATGGATGTATTGTCTAAAACCTGTTTTG
GATTTCTACGCACAGCGCGTTGTTTGGTGTGTTGGCATGTCACTCGTCAA
TTTACTTGGTTGTAGACTGGAACGCGTGCCGACGTATGCGTACGAGAACA
TAAATGAGTGGTGTGTGTCGAGTTAGTAAGTTGTGTGTTCATTATTTAGC
TTCAGGGAATGCACACTGACTGCCTGATTTTTTACGATCGACCTACACCT
ACCTGTAGAAACTGAATACATGAATGATAATTTCGAGGCACCTTCCTTGG
GTGGAGGTCGCGTTGGTTGACGAACAACGACGACTTGGAACGCTTCGGGC
AAGAAACCCAATTATAAGTGAATCTAACGACACGGTGGCTCCTAACTTGG
GGACGGCTCCCTCCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig7:1654852..1660516+

>mRNA_E-siliculosus-1a_M_contig7.15149.1 ID=mRNA_E-siliculosus-1a_M_contig7.15149.1|Name=mRNA_E-siliculosus-1a_M_contig7.15149.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1806bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:1654852..1660516+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGCACTTCGCCACACTGCGCAGCACCTCCTGCGTGATATGGTTGCCCC
ACCGATCAAAACTGCTGTCGCAGTTTTCACCCTCTTCTGGGGTAATACAC
TAGCCTGGCAAGCTCCGACCTCTACTCGCAGCAGCACAAACTCCTTGGTA
TCAAGGGCATCCTTCGACACGTGTGGGTCCGCTGCTCCATTCATGCGCCG
CCGCTGTGCAACGACTCAGCAGAATAGATGGCACTTCGCCACACTGCGCA
GCACCTCCTGCGTGATATGGTTGCCCCACCGATCAAAACTGCTGTCGCAG
TTTTCACCCTCTTCTGGGGTAATACACTAGCCTGGCAAGCTCCGACCTCT
ACTCGCAGCAGCACAAACTCCTTGGTATCAAGGGCATCCTTCGACACGTG
TGGGTCCGCTGCTCCATTCATGCGCCGCCGCTGTGCAACGACTCAGCAGA
ATAGGGCGATGAAGGCGGCCACGACTTCAGGGATTGGCGTGAGTATGGGG
GGAGATGCAGAGGGCCATCGAGCGTTCGTCGAGAAGTTGCTGACGCTCAC
CGGGGACCCCCTCGAGGAGGGCGATGAAGGCGGCCACGACTTCAGGGATT
GGCGTGAGTATGGGGGGAGATGCAGAGGGCCATCGAGCGTTCGTCGAGAA
GTTGCTGACGCTCACCGGGGACCCCCTCGAGGAGGACGGGGGAAGGGTCG
TCGTTTTTCGCGGGGACCCCTCGGCGTCCCTGATGCTTATCGGGGAAGCG
CCGGGCGCCGAGGAAGACAGGCTCGGGGTGCCGTTCATCGGTCGGTCGGG
GCAGCTGCTGGACGACATGCTGAGGGCGGTCGGCTTCGATCCCGAACGGG
AGGTCTACGTCAGGACGGGGGAAGGGTCGTCGTTTTTCGCGGGGACCCCT
CGGCGTCCCTGATGCTTATCGGGGAAGCGCCGGGCGCCGAGGAAGACAGG
CTCGGGGTGCCGTTCATCGGTCGGTCGGGGCAGCTGCTGGACGACATGCT
GAGGGCGGTCGGCTTCGATCCCGAACGGGAGGTCTACGTCAGCAACATCG
TGCGGCGGAGACCGATCGACAACCGAACGCCTACCCCCGAGGAGATGGAC
TTCTACCTGCCGTTTCTCCTCGAGGAGATAGGGCTAGTCGACCCCCACGT
CATCGTACTGCTTGCAACATCGTGCGGCGGAGACCGATCGACAACCGAAC
GCCTACCCCCGAGGAGATGGACTTCTACCTGCCGTTTCTCCTCGAGGAGA
TAGGGCTAGTCGACCCCCACGTCATCGTACTGCTTGGCGCTAGCTCAACC
AAGGCGCTCCTGCCGCACGAGACGCGGGGCATCACCAGGGCGCGAGGGCA
GTGGGCGGACCCTGTAGCTTTGGCCGAGGCGCTAGCTCAACCAAGGCGCT
CCTGCCGCACGAGACGCGGGGCATCACCAGGGCGCGAGGGCAGTGGGCGG
ACCCTGTAGCTTTGGCCGAGATACACGACGGCAGGCTCACCGACAAGCTG
ATCATGCCCTGGTTCCACCCCAGCTACCTCCTTCGCAACTCGGGGGAGCG
CAGTCGGCAGGAGGGAGGCGTGCGATGGCACGCGAGAAACGACCTAAGAG
CAGTCCGCGACGTGGTTCGCAGCATTCAGGAGGAATGAATACACGACGGC
AGGCTCACCGACAAGCTGATCATGCCCTGGTTCCACCCCAGCTACCTCCT
TCGCAACTCGGGGGAGCGCAGTCGGCAGGAGGGAGGCGTGCGATGGCACG
CGAGAAACGACCTAAGAGCAGTCCGCGACGTGGTTCGCAGCATTCAGGAG
GAATGA
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