mRNA_E-siliculosus-1a_M_contig7.15089.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig7.15089.1
Unique NamemRNA_E-siliculosus-1a_M_contig7.15089.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15089.1 vs. uniprot
Match: D7FPB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB4_ECTSI)

HSP 1 Score: 366 bits (939), Expect = 3.630e-127
Identity = 196/206 (95.15%), Postives = 197/206 (95.63%), Query Frame = 1 
Query:    1 MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGFLNAGIISTLGVLTLFMAFWPPLLADLAVASGSVITCIVIIFVAVRITSFINCAMSEHAASSNEFYIEAKKNLWKQALALCSIGCAVSVAIAVRHLTLFGRSTPIIVWTAQTLCGHAAALIFTSLTQFQAAPSMSRASSTRPSQIATMTSRSEYSASKISRL 618
            MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVG LNAGIISTLGV TLFM FWPPLL DLAVASGS ITCIVIIFVAVRITSFINCAMSEHAASSNEFYIEAKKNLWKQALALCSIGCAVSVAIAVRHLT FGRSTPIIVWTAQTLCGHAAALIFTSLTQFQAAPSMSRASSTRPS IATMTS SEYSA+KISR 
Sbjct:    1 MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGLLNAGIISTLGVGTLFMTFWPPLLVDLAVASGSAITCIVIIFVAVRITSFINCAMSEHAASSNEFYIEAKKNLWKQALALCSIGCAVSVAIAVRHLTQFGRSTPIIVWTAQTLCGHAAALIFTSLTQFQAAPSMSRASSTRPSLIATMTSSSEYSATKISRF 206
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15089.1 vs. uniprot
Match: D7FVJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ6_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 4.590e-42
Identity = 87/193 (45.08%), Postives = 122/193 (63.21%), Query Frame = 1 
Query:    4 LFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGFLNAGIISTLGVLTLFMAFWPPLLADLAVASGSVITCIVIIFVAVRITSFINCAMSEH-----AASSNEFYIEAKKNLWKQALALCSIGCAVSVAIAVRHLTLFGRSTPIIVWTAQTLCGHAAALIFTSLTQFQAAPSMSRASSTRPSQI 567
            +F VAM+AE+W+ESLP Q+++P SFA  L   S   ++F+V+G  N G++S LGV+T F   WP   ADL +  G +   +V+ FVA RIT+ IN A S       + SS  FY +AK+N+W QA ALC +GC   + IA++ LT+ GRSTPII+ T Q L GH  A++F+S T F  A  M R S+   S++
Sbjct:   48 MFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARSWPQQAADLFIVGGVLTAELVVFFVASRITAVINQATSTAMGRPGSPSSRAFYFKAKRNMWIQAAALCGVGCFPMLVIAIKRLTMAGRSTPIIIETLQILTGHGGAIMFSSATSFDRASGMRRNSAVDTSRV 240
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15089.1 vs. uniprot
Match: A0A6H5KVX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX1_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.630e-27
Identity = 63/154 (40.91%), Postives = 89/154 (57.79%), Query Frame = 1 
Query:    4 LFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGFLNAGIISTLGVLTLFMAFWPPLLADLAVASGSVITCIVIIFVAVRITSFINCAMSEHAASSNEFYIEAKKNLWKQALALCSIGCAVSVAIAVRHLTLFGRSTPIIVWTAQ 465
            +F VAM+AE+W+ESLP Q+++P SFA  L   S   ++F+V+G  N G++S LGV+T F   WP   AD+ V  G                      ++  + SS  FY +AK+NLW QA AL  +GC   + IA++ LT+ GRSTPII+ T Q
Sbjct:   32 MFEVAMIAEYWVESLPSQILTPDSFAGKLRNASETSSLFVVIGVANGGLVSLLGVMTFFARTWPQQAADIFVVGG---------------------ILTAGSPSSRTFYSKAKRNLWIQAAALSGVGCFPMLVIAIKLLTMAGRSTPIILETLQ 164
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BLAST of mRNA_E-siliculosus-1a_M_contig7.15089.1 vs. uniprot
Match: A0A6H5JMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK0_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.680e-11
Identity = 57/139 (41.01%), Postives = 62/139 (44.60%), Query Frame = 1 
Query:  181 MAFWPPLLADLAVASGSVITCIVIIFVAVRITSFINCAMSEHAASSNEFYIEAKKNLWKQALALCSIGCAVSVAIAVRHLTLFGRSTPIIVWTAQTLCGHAAALIFTSLTQFQAA-PSMSRASSTRPSQIATMTSRSEY 594
            MAFWPPLLADL V SGS I   VI FVAVRITSFIN AMSE                                                       LCGHAAA +F S TQF AA PSMS   +   + I TM SRS++
Sbjct:    1 MAFWPPLLADLVVVSGSCIAGTVIFFVAVRITSFINRAMSE------------------------------------------------------ALCGHAAAFLFMSSTQFHAAAPSMSSTGTNHSTLITTMRSRSKH 85
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig7.15089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FPB4_ECTSI3.630e-12795.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVJ6_ECTSI4.590e-4245.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVX1_9PHAE1.630e-2740.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMK0_9PHAE3.680e-1141.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig7contigE-siliculosus-1a_M_contig7:1071262..1073590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size630
Model size630
Exons4
Ec32 orthologEc-15_004040.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorysignal anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig7.15089.1prot_E-siliculosus-1a_M_contig7.15089.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig7 1071262..1073590 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622935922.1499019-CDS-E-siliculosus-1a_M_contig7:1071261..10714261622935922.1499019-CDS-E-siliculosus-1a_M_contig7:1071261..1071426Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1071262..1071426 -
1696250848.6159518-CDS-E-siliculosus-1a_M_contig7:1071261..10714261696250848.6159518-CDS-E-siliculosus-1a_M_contig7:1071261..1071426Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1071262..1071426 -
1622935922.1638548-CDS-E-siliculosus-1a_M_contig7:1071629..10717911622935922.1638548-CDS-E-siliculosus-1a_M_contig7:1071629..1071791Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1071630..1071791 -
1696250848.6290555-CDS-E-siliculosus-1a_M_contig7:1071629..10717911696250848.6290555-CDS-E-siliculosus-1a_M_contig7:1071629..1071791Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1071630..1071791 -
1622935922.1779685-CDS-E-siliculosus-1a_M_contig7:1072774..10728371622935922.1779685-CDS-E-siliculosus-1a_M_contig7:1072774..1072837Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1072775..1072837 -
1696250848.6381004-CDS-E-siliculosus-1a_M_contig7:1072774..10728371696250848.6381004-CDS-E-siliculosus-1a_M_contig7:1072774..1072837Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1072775..1072837 -
1622935922.198104-CDS-E-siliculosus-1a_M_contig7:1073350..10735901622935922.198104-CDS-E-siliculosus-1a_M_contig7:1073350..1073590Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1073351..1073590 -
1696250848.6468375-CDS-E-siliculosus-1a_M_contig7:1073350..10735901696250848.6468375-CDS-E-siliculosus-1a_M_contig7:1073350..1073590Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig7 1073351..1073590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig7.15089.1

>prot_E-siliculosus-1a_M_contig7.15089.1 ID=prot_E-siliculosus-1a_M_contig7.15089.1|Name=mRNA_E-siliculosus-1a_M_contig7.15089.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=210bp
MLFGVAMMAEFWLESLPHQLVSPGSFAEWLTKVSRKHNIFLVVGFLNAGI
ISTLGVLTLFMAFWPPLLADLAVASGSVITCIVIIFVAVRITSFINCAMS
EHAASSNEFYIEAKKNLWKQALALCSIGCAVSVAIAVRHLTLFGRSTPII
VWTAQTLCGHAAALIFTSLTQFQAAPSMSRASSTRPSQIATMTSRSEYSA
SKISRLDEG*
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mRNA from alignment at E-siliculosus-1a_M_contig7:1071262..1073590-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig7.15089.1 ID=mRNA_E-siliculosus-1a_M_contig7.15089.1|Name=mRNA_E-siliculosus-1a_M_contig7.15089.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2329bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:1071262..1073590- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTGTTCGGCGTCGCCATGATGGCCGAGTTTTGGTTGGAGAGCCTGCC
GCACCAGCTGGTTTCCCCCGGCAGCTTTGCGGAGTGGTTGACAAAGGTTT
CGCGCAAGCACAACATATTCTTGGTTGTTGGCTTTCTCAACGCCGGGATT
ATATCGACCCTAGGCGTCTTGACGCTGTTCATGGCTTTCTGGCCTCCATT
GCTGGCGGATCTTGCAGTGGCGTCCGGGTCCGTCATAACGGTGAAACACG
ATAACGGTTTACCACCTCTAAGCTTGTGTAGTTCATCGTACCCCGATGCT
ATACCAGTAGCATTTTCACAGCGTACCCGGTTCTGCTGTTCAGCCTATAT
ATGTACTTTTGAACTGCTGGACGGTCAGATTTTTTTGTTTCACTGATGCG
TATGCAACTGGGGCCGACTCAGCACCAATCACATCCCTCGCACCTGTCAA
GGCGCACGGTCGACGGGGAGAACAGAGTGGTTCCTCACGAGACAAACGAT
TGTATGCGTATTCCTTCTTTCGCTTAGGTTGCTGATCGCCAGGCCAGTTA
CTGTCTCACGCCCTCCAGCCTAACATATATGCCTGTCACGGCAAGGGGGA
AACACGGATTGGTCATGGTCGAAAGTGGCTCTCGGTAACGCTGTGTCGTG
TTTCAGGTTCGCTCTGAAAGCACTGACTTTCCCCCCCGCTTCTTGCTGCC
ACCTTCGCACGCCTCTAACAACCATTCCCTGCACCTAACGTTGGCACCAC
TAGTGCATAGTTATCATCTTCGTGGCTGTTCGGATCACGAGCTTCATCAA
CTGCGCTATGTCGGAGGTAGGTGCGGAGTTGAAGTACGGGGGCTAGCAAG
CAAAGCTTTCGCCCAATACACGATGGCTTTATGTCAGAGGTGCTGCTCAC
AAGTAGGGACAGAGTTGAGACGTCGCACAAGGCGGCTTGACGGTCTCGAA
GAAGGTGCCTGCATTCTTAAACACCCACGACATGCTATGTTGACATGCGT
TCATGTACGTTTTGCGTAGTCGAATTCGCTGCTTGATGAGGGGGGTTGAC
TGGTTTCATGCATGATACGCTTCGATGTTGATACCTGGGCCCCCGACACC
ATTGCGTGAATAATTGAAATATTCATGACGGAACAACTTTCTTTGCCTTT
TTCGGCATTGCGGGAAGCTTGACGTATGTATTAAACGAGCTATCATTTTC
GTGTGGAGAGAAACCCAGGACGGCATTTTTGTGTTCATGCATCTCTTCCA
CAGAAAAGAGCCCGTGGTTGATCAGCAATGAACATATATTGCTATACGGT
GACCAAATTGTACTTGGACCGTTCCCGAGCAGCATACAGCGATATCTCCC
CTTGTGGACAAATGCTTGACAAGACAGTGCCATTTAGTCTTGTCGGTAAA
TGCTTGAAACATCCAGACCAACGTCGGACGCCTGGCTAGCGTGAGCCAGC
TTGACTTCCACAATTGCATGTCCTGTGTATCCGAGGATCCTGAAACGGCA
ACCACCCGATTTCAGTCGTGTGTCGTTCTCTCCCTGAGATTCCTTCAAGC
CACCGTAAGCAACGAGTACACATGTGCACATGAGAACGCGCGTGTGAGTC
AGCGAGTGCGTGCGGGCCGGCGCATGCTTGTGTTTCAATGCTTCCTGGTT
AATAATACACAGCAGTATTCGTGTTGGGTCGGTCGCACTCCTCGACCAAA
AGCTGACAAATCAATCAAACATTGTTTCTTTTATAGGCAACGCAACGCAA
TATTAATCCCCGCGCTCTCGTTACTTGCATGTCCTTCCATCTGCACCAGC
ATGCAGCTAGCTCGAACGAGTTCTACATCGAGGCAAAGAAGAATCTCTGG
AAACAGGCCCTTGCACTTTGCAGCATCGGTTGCGCCGTGAGTGTTGCTAT
TGCTGTCAGGCACCTTACTCTATTCGGGCGAAGCACTCCTATCATCGTAT
GGACTGCTCAGGTTAGTCCCGCCGTCAATGTGGCTGTCCACCGCTCCCTG
TTGATGGATAACGCTTCCGCGAAAACGGCTTTTTCCCCACTTCGTAAACG
GTCTTGGGTAGATACGAACGTTTCGATATGTGATTAGCCGTTCTTGCCGG
CCAAATCAACACAAACGTTTCGGGGTCGGCGTTAACGACGCCCGTTCTCT
TGTGAATCTGGCAGACGCTGTGTGGCCATGCGGCTGCGCTCATATTCACT
AGCTTGACACAGTTCCAAGCGGCGCCATCAATGTCGAGGGCCTCCAGCAC
CCGTCCGAGCCAGATCGCCACCATGACATCCAGAAGCGAATACTCGGCGT
CGAAGATCTCAAGGTTAGACGAGGGTTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig7:1071262..1073590-

>mRNA_E-siliculosus-1a_M_contig7.15089.1 ID=mRNA_E-siliculosus-1a_M_contig7.15089.1|Name=mRNA_E-siliculosus-1a_M_contig7.15089.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1260bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig7:1071262..1073590- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTGTTCGGCGTCGCCATGATGGCCGAGTTTTGGTTGGAGAGCCTGCC
GCACCAGCTGGTTTCCCCCGGCAGCTTTGCGGAGTGGTTGACAAAGGTTT
CGCGCAAGCACAACATATTCTTGGTTGTTGGCTTTCTCAACGCCGGGATT
ATATCGACCCTAGGCGTCTTGACGCTGTTCATGGCTTTCTGGCCTCCATT
GCTGGCGGATCTTGCAGTGGCGTCCGGGTCCGTCATAACGATGCTGTTCG
GCGTCGCCATGATGGCCGAGTTTTGGTTGGAGAGCCTGCCGCACCAGCTG
GTTTCCCCCGGCAGCTTTGCGGAGTGGTTGACAAAGGTTTCGCGCAAGCA
CAACATATTCTTGGTTGTTGGCTTTCTCAACGCCGGGATTATATCGACCC
TAGGCGTCTTGACGCTGTTCATGGCTTTCTGGCCTCCATTGCTGGCGGAT
CTTGCAGTGGCGTCCGGGTCCGTCATAACGTGCATAGTTATCATCTTCGT
GGCTGTTCGGATCACGAGCTTCATCAACTGCGCTATGTCGGAGTGCATAG
TTATCATCTTCGTGGCTGTTCGGATCACGAGCTTCATCAACTGCGCTATG
TCGGAGCATGCAGCTAGCTCGAACGAGTTCTACATCGAGGCAAAGAAGAA
TCTCTGGAAACAGGCCCTTGCACTTTGCAGCATCGGTTGCGCCGTGAGTG
TTGCTATTGCTGTCAGGCACCTTACTCTATTCGGGCGAAGCACTCCTATC
ATCGTATGGACTGCTCAGCATGCAGCTAGCTCGAACGAGTTCTACATCGA
GGCAAAGAAGAATCTCTGGAAACAGGCCCTTGCACTTTGCAGCATCGGTT
GCGCCGTGAGTGTTGCTATTGCTGTCAGGCACCTTACTCTATTCGGGCGA
AGCACTCCTATCATCGTATGGACTGCTCAGACGCTGTGTGGCCATGCGGC
TGCGCTCATATTCACTAGCTTGACACAGTTCCAAGCGGCGCCATCAATGT
CGAGGGCCTCCAGCACCCGTCCGAGCCAGATCGCCACCATGACATCCAGA
AGCGAATACTCGGCGTCGAAGATCTCAAGGTTAGACGAGGGTTAAACGCT
GTGTGGCCATGCGGCTGCGCTCATATTCACTAGCTTGACACAGTTCCAAG
CGGCGCCATCAATGTCGAGGGCCTCCAGCACCCGTCCGAGCCAGATCGCC
ACCATGACATCCAGAAGCGAATACTCGGCGTCGAAGATCTCAAGGTTAGA
CGAGGGTTAA
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