prot_E-siliculosus-1a_F_contig1686.3843.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1686.3843.1
Unique Nameprot_E-siliculosus-1a_F_contig1686.3843.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length40
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: D7FUS9_ECTSI (DNA repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS9_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 7.500e-18
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 0
Query:    1 MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS 40
            MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS
Sbjct:  595 MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS 634          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A6H5JN56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN56_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.600e-17
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 0
Query:    1 MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 39
            MLDEAHFIKDR+TSTAKAVFALTSLYRWCLTGTPLQNRV
Sbjct:  770 MLDEAHFIKDRATSTAKAVFALTSLYRWCLTGTPLQNRV 808          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: W7TXY3_9STRA (Snf2 super family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXY3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.380e-14
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0
Query:    1 MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 39
            +LDEAHFIK RSTSTAKAVFALTSL +WCLTGTPLQNRV
Sbjct:  635 ILDEAHFIKTRSTSTAKAVFALTSLNKWCLTGTPLQNRV 673          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A7S3MHT9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHT9_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.610e-13
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 0
Query:    1 MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 39
            +LDEAH IKDRSTSTAKAVF LTSL +WCLTGTPLQNRV
Sbjct:  939 ILDEAHLIKDRSTSTAKAVFNLTSLNKWCLTGTPLQNRV 977          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A8J751_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J751_CHLRE)

HSP 1 Score: 65.9 bits (159), Expect = 2.270e-13
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 0
Query:    1 MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS 40
            +LDEAH IKDR  STAKAVFALTS Y+W L+GTPLQNRV+
Sbjct:   13 ILDEAHCIKDRRCSTAKAVFALTSAYKWALSGTPLQNRVA 52          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A482SF00_9ARCH (SNF2-rel_dom domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SF00_9ARCH)

HSP 1 Score: 69.7 bits (169), Expect = 7.630e-13
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 0
Query:    1 MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 39
            +LDEAH IKDRSTSTAKAVF L SL +WCLTGTPLQNRV
Sbjct:  321 ILDEAHLIKDRSTSTAKAVFNLVSLNKWCLTGTPLQNRV 359          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A7S3Z4G5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z4G5_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 1.620e-12
Identity = 30/39 (76.92%), Postives = 36/39 (92.31%), Query Frame = 0
Query:    1 MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 39
            +LDEAH IK R+ STAK+V+ALTSLY+WC+TGTPLQNRV
Sbjct:   64 VLDEAHKIKARNNSTAKSVYALTSLYKWCVTGTPLQNRV 102          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A177V1K8_9BASI (Uncharacterized protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177V1K8_9BASI)

HSP 1 Score: 67.8 bits (164), Expect = 3.660e-12
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 0
Query:    1 MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 39
            +LDEAH IKDRST+TAK  FAL ++YRWCL+GTPLQNRV
Sbjct:  604 ILDEAHCIKDRSTNTAKGAFALRAMYRWCLSGTPLQNRV 642          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A1D1ZA37_9ARAE (DNA repair protein RAD16 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZA37_9ARAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.660e-12
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 0
Query:    1 MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 39
            +LDEAHFIKDR +STA+AVFAL SLY+W L+GTPLQNRV
Sbjct:  460 ILDEAHFIKDRRSSTARAVFALQSLYKWALSGTPLQNRV 498          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A1D1XYE6_9ARAE (DNA repair protein RAD16 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XYE6_9ARAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.660e-12
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 0
Query:    1 MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 39
            +LDEAHFIKDR +STA+AVFAL SLY+W L+GTPLQNRV
Sbjct:  460 ILDEAHFIKDRRSSTARAVFALQSLYKWALSGTPLQNRV 498          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUS9_ECTSI7.500e-18100.00DNA repair protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JN56_9PHAE6.600e-1797.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TXY3_9STRA3.380e-1489.74Snf2 super family n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A7S3MHT9_9STRA1.610e-1387.18Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A8J751_CHLRE2.270e-1377.50Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]
A0A482SF00_9ARCH7.630e-1384.62SNF2-rel_dom domain-containing protein (Fragment) ... [more]
A0A7S3Z4G5_9EUKA1.620e-1276.92Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A177V1K8_9BASI3.660e-1276.92Uncharacterized protein n=2 Tax=Tilletia TaxID=132... [more]
A0A1D1ZA37_9ARAE3.660e-1279.49DNA repair protein RAD16 (Fragment) n=1 Tax=Anthur... [more]
A0A1D1XYE6_9ARAE3.660e-1279.49DNA repair protein RAD16 (Fragment) n=1 Tax=Anthur... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038718SNF2-like, N-terminal domain superfamilyGENE3D3.40.50.10810coord: 1..40
e-value: 1.7E-14
score: 55.2
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 2..39
e-value: 1.8E-10
score: 40.1
NoneNo IPR availablePANTHERPTHR45626FAMILY NOT NAMEDcoord: 1..39
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1686contigE-siliculosus-1a_F_contig1686:23299..23418 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1686.3843.1mRNA_E-siliculosus-1a_F_contig1686.3843.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1686 23272..23418 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1686.3843.1 ID=prot_E-siliculosus-1a_F_contig1686.3843.1|Name=mRNA_E-siliculosus-1a_F_contig1686.3843.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=40bp
MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR000330SNF2_N
IPR038718SNF2-like_sf