mRNA_E-siliculosus-1a_F_contig1686.3843.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: D7FUS9_ECTSI (DNA repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS9_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 1.500e-22 Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1
Query: 7 QISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS 147
+ISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS
Sbjct: 588 EISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS 634
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A6H5JN56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN56_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 1.330e-21 Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 1
Query: 7 QISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 144
+ISWQRIMLDEAHFIKDR+TSTAKAVFALTSLYRWCLTGTPLQNRV
Sbjct: 763 EISWQRIMLDEAHFIKDRATSTAKAVFALTSLYRWCLTGTPLQNRV 808
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A8J751_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J751_CHLRE) HSP 1 Score: 79.3 bits (194), Expect = 1.530e-18 Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1
Query: 1 GPQISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS 147
G Q+ W+RI+LDEAH IKDR STAKAVFALTS Y+W L+GTPLQNRV+
Sbjct: 4 GQQVPWRRIILDEAHCIKDRRCSTAKAVFALTSAYKWALSGTPLQNRVA 52
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: W7TXY3_9STRA (Snf2 super family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXY3_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.530e-17 Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1
Query: 7 QISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 144
++SW RI+LDEAHFIK RSTSTAKAVFALTSL +WCLTGTPLQNRV
Sbjct: 628 ELSWFRIILDEAHFIKTRSTSTAKAVFALTSLNKWCLTGTPLQNRV 673
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A7S3MHT9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHT9_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 9.920e-17 Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 1
Query: 10 ISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 144
+SW RI+LDEAH IKDRSTSTAKAVF LTSL +WCLTGTPLQNRV
Sbjct: 933 VSWFRIILDEAHLIKDRSTSTAKAVFNLTSLNKWCLTGTPLQNRV 977
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A482SF00_9ARCH (SNF2-rel_dom domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SF00_9ARCH) HSP 1 Score: 80.1 bits (196), Expect = 2.340e-16 Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1
Query: 7 QISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 144
++SW RI+LDEAH IKDRSTSTAKAVF L SL +WCLTGTPLQNRV
Sbjct: 314 EVSWFRIILDEAHLIKDRSTSTAKAVFNLVSLNKWCLTGTPLQNRV 359
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A7S3Z4G5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z4G5_9EUKA) HSP 1 Score: 75.9 bits (185), Expect = 6.330e-16 Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1
Query: 10 ISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 144
I W RI+LDEAH IK R+ STAK+V+ALTSLY+WC+TGTPLQNRV
Sbjct: 58 IRWSRIVLDEAHKIKARNNSTAKSVYALTSLYKWCVTGTPLQNRV 102
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A061SAJ4_9CHLO (DNA repair protein RAD16 n=5 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SAJ4_9CHLO) HSP 1 Score: 79.0 bits (193), Expect = 6.450e-16 Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1
Query: 7 QISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS 147
Q++W+RI+LDE H IKDR +STAKAVFALTS YRW L+GTPLQNRVS
Sbjct: 625 QVAWRRIILDEGHSIKDRRSSTAKAVFALTSKYRWALSGTPLQNRVS 671
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A1V9Z6J7_9STRA (DNA repair protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6J7_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.640e-15 Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 1
Query: 7 QISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 144
+I+W RI+LDEAH+IKDR STA++VF LTS Y+WCLTGTPLQNR+
Sbjct: 554 EIAWARIVLDEAHYIKDRRCSTARSVFRLTSKYKWCLTGTPLQNRI 599
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: K8EDD8_9CHLO (DNA repair protein RAD16 n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EDD8_9CHLO) HSP 1 Score: 77.4 bits (189), Expect = 2.240e-15 Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1
Query: 7 QISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 144
QI W+RI+LDEAH IK R+TSTAKAV+AL S Y+WCLTGTPLQNRV
Sbjct: 730 QIHWERIILDEAHKIKARTTSTAKAVYALDSDYKWCLTGTPLQNRV 775 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1686.3843.1 >prot_E-siliculosus-1a_F_contig1686.3843.1 ID=prot_E-siliculosus-1a_F_contig1686.3843.1|Name=mRNA_E-siliculosus-1a_F_contig1686.3843.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=40bp MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVSback to top mRNA from alignment at E-siliculosus-1a_F_contig1686:23272..23418+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1686.3843.1 ID=mRNA_E-siliculosus-1a_F_contig1686.3843.1|Name=mRNA_E-siliculosus-1a_F_contig1686.3843.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=147bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1686:23272..23418+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1686:23272..23418+ >mRNA_E-siliculosus-1a_F_contig1686.3843.1 ID=mRNA_E-siliculosus-1a_F_contig1686.3843.1|Name=mRNA_E-siliculosus-1a_F_contig1686.3843.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=240bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1686:23272..23418+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |