mRNA_E-siliculosus-1a_F_contig1686.3843.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1686.3843.1
Unique NamemRNA_E-siliculosus-1a_F_contig1686.3843.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: D7FUS9_ECTSI (DNA repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS9_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-22
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1
Query:    7 QISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS 147
            +ISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS
Sbjct:  588 EISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS 634          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A6H5JN56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN56_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.330e-21
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 1
Query:    7 QISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 144
            +ISWQRIMLDEAHFIKDR+TSTAKAVFALTSLYRWCLTGTPLQNRV
Sbjct:  763 EISWQRIMLDEAHFIKDRATSTAKAVFALTSLYRWCLTGTPLQNRV 808          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A8J751_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J751_CHLRE)

HSP 1 Score: 79.3 bits (194), Expect = 1.530e-18
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1
Query:    1 GPQISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS 147
            G Q+ W+RI+LDEAH IKDR  STAKAVFALTS Y+W L+GTPLQNRV+
Sbjct:    4 GQQVPWRRIILDEAHCIKDRRCSTAKAVFALTSAYKWALSGTPLQNRVA 52          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: W7TXY3_9STRA (Snf2 super family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXY3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.530e-17
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 1
Query:    7 QISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 144
            ++SW RI+LDEAHFIK RSTSTAKAVFALTSL +WCLTGTPLQNRV
Sbjct:  628 ELSWFRIILDEAHFIKTRSTSTAKAVFALTSLNKWCLTGTPLQNRV 673          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A7S3MHT9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHT9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.920e-17
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 1
Query:   10 ISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 144
            +SW RI+LDEAH IKDRSTSTAKAVF LTSL +WCLTGTPLQNRV
Sbjct:  933 VSWFRIILDEAHLIKDRSTSTAKAVFNLTSLNKWCLTGTPLQNRV 977          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A482SF00_9ARCH (SNF2-rel_dom domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SF00_9ARCH)

HSP 1 Score: 80.1 bits (196), Expect = 2.340e-16
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1
Query:    7 QISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 144
            ++SW RI+LDEAH IKDRSTSTAKAVF L SL +WCLTGTPLQNRV
Sbjct:  314 EVSWFRIILDEAHLIKDRSTSTAKAVFNLVSLNKWCLTGTPLQNRV 359          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A7S3Z4G5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z4G5_9EUKA)

HSP 1 Score: 75.9 bits (185), Expect = 6.330e-16
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1
Query:   10 ISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 144
            I W RI+LDEAH IK R+ STAK+V+ALTSLY+WC+TGTPLQNRV
Sbjct:   58 IRWSRIVLDEAHKIKARNNSTAKSVYALTSLYKWCVTGTPLQNRV 102          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A061SAJ4_9CHLO (DNA repair protein RAD16 n=5 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SAJ4_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 6.450e-16
Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 1
Query:    7 QISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS 147
            Q++W+RI+LDE H IKDR +STAKAVFALTS YRW L+GTPLQNRVS
Sbjct:  625 QVAWRRIILDEGHSIKDRRSSTAKAVFALTSKYRWALSGTPLQNRVS 671          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: A0A1V9Z6J7_9STRA (DNA repair protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6J7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.640e-15
Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 1
Query:    7 QISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 144
            +I+W RI+LDEAH+IKDR  STA++VF LTS Y+WCLTGTPLQNR+
Sbjct:  554 EIAWARIVLDEAHYIKDRRCSTARSVFRLTSKYKWCLTGTPLQNRI 599          
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Match: K8EDD8_9CHLO (DNA repair protein RAD16 n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EDD8_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 2.240e-15
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1
Query:    7 QISWQRIMLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRV 144
            QI W+RI+LDEAH IK R+TSTAKAV+AL S Y+WCLTGTPLQNRV
Sbjct:  730 QIHWERIILDEAHKIKARTTSTAKAVYALDSDYKWCLTGTPLQNRV 775          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1686.3843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUS9_ECTSI1.500e-2297.87DNA repair protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JN56_9PHAE1.330e-2195.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A8J751_CHLRE1.530e-1873.47Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]
W7TXY3_9STRA1.530e-1784.78Snf2 super family n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A7S3MHT9_9STRA9.920e-1784.44Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482SF00_9ARCH2.340e-1680.43SNF2-rel_dom domain-containing protein (Fragment) ... [more]
A0A7S3Z4G5_9EUKA6.330e-1675.56Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A061SAJ4_9CHLO6.450e-1676.60DNA repair protein RAD16 n=5 Tax=Tetraselmis sp. G... [more]
A0A1V9Z6J7_9STRA1.640e-1571.74DNA repair protein n=1 Tax=Thraustotheca clavata T... [more]
K8EDD8_9CHLO2.240e-1578.26DNA repair protein RAD16 n=1 Tax=Bathycoccus prasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1686contigE-siliculosus-1a_F_contig1686:23272..23418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size120
Model size147
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.E
EggNOG OGsCOG0141@1,KOG1002@2759
EggNOG free text desc.pyrimidine dimer repair by nucleotide-excision repair
Seed eggNOG ortholog2880.D7FUS9
Seed ortholog evalue6.2e-15
Seed ortholog score85.5
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928186.3324125-UTR-E-siliculosus-1a_F_contig1686:23271..232981622928186.3324125-UTR-E-siliculosus-1a_F_contig1686:23271..23298Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1686 23272..23298 +
1696318838.9559677-UTR-E-siliculosus-1a_F_contig1686:23271..232981696318838.9559677-UTR-E-siliculosus-1a_F_contig1686:23271..23298Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1686 23272..23298 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928186.3648827-CDS-E-siliculosus-1a_F_contig1686:23298..234181622928186.3648827-CDS-E-siliculosus-1a_F_contig1686:23298..23418Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1686 23299..23418 +
1696318838.9666154-CDS-E-siliculosus-1a_F_contig1686:23298..234181696318838.9666154-CDS-E-siliculosus-1a_F_contig1686:23298..23418Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1686 23299..23418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1686.3843.1prot_E-siliculosus-1a_F_contig1686.3843.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1686 23299..23418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1686.3843.1

>prot_E-siliculosus-1a_F_contig1686.3843.1 ID=prot_E-siliculosus-1a_F_contig1686.3843.1|Name=mRNA_E-siliculosus-1a_F_contig1686.3843.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=40bp
MLDEAHFIKDRSTSTAKAVFALTSLYRWCLTGTPLQNRVS
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mRNA from alignment at E-siliculosus-1a_F_contig1686:23272..23418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1686.3843.1 ID=mRNA_E-siliculosus-1a_F_contig1686.3843.1|Name=mRNA_E-siliculosus-1a_F_contig1686.3843.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=147bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1686:23272..23418+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCCCCCAGATCTCTTGGCAGCGCATCATGCTGGACGAGGCCCACTTCAT CAAGGACCGGTCCACGTCCACAGCCAAGGCCGTCTTCGCGCTCACGTCGC TCTACAGGTGGTGCCTGACCGGCACCCCGTTGCAGAACAGGGTAAGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1686:23272..23418+

>mRNA_E-siliculosus-1a_F_contig1686.3843.1 ID=mRNA_E-siliculosus-1a_F_contig1686.3843.1|Name=mRNA_E-siliculosus-1a_F_contig1686.3843.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=240bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1686:23272..23418+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTGGACGAGGCCCACTTCATCAAGGACCGGTCCACGTCCACAGCCAA
GGCCGTCTTCGCGCTCACGTCGCTCTACAGGTGGTGCCTGACCGGCACCC
CGTTGCAGAACAGGGTAAGCATGCTGGACGAGGCCCACTTCATCAAGGAC
CGGTCCACGTCCACAGCCAAGGCCGTCTTCGCGCTCACGTCGCTCTACAG
GTGGTGCCTGACCGGCACCCCGTTGCAGAACAGGGTAAGC
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