prot_E-siliculosus-1a_F_contig1634.3613.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1634.3613.1
Unique Nameprot_E-siliculosus-1a_F_contig1634.3613.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length152
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1634.3613.1 vs. uniprot
Match: D8LKG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG3_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 1.600e-101
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 
Query:    1 MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGLLLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTSNLLNIVLGVLLLLTAILYAFAQIVGSAITDTTTVPSDAAPADGQTPFGTFT 151
            MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGLLLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTSNLLNIVLGVLLLLTAILYAFAQIVGSAITDTTTVPSDAAPADGQTPFGTFT
Sbjct:    1 MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGLLLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTSNLLNIVLGVLLLLTAILYAFAQIVGSAITDTTTVPSDAAPADGQTPFGTFT 151
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1634.3613.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKG3_ECTSI1.600e-101100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019365TVP18/Calcium channel flowerPFAMPF10233Cg6151-Pcoord: 21..123
e-value: 1.5E-8
score: 35.0
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 102..121
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 122..151
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..40
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..64
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 65..75
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 76..96
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 97..101
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..45
NoneNo IPR availableTMHMMTMhelixcoord: 82..99
NoneNo IPR availableTMHMMTMhelixcoord: 39..61
NoneNo IPR availableTMHMMTMhelixcoord: 103..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1634contigE-siliculosus-1a_F_contig1634:24369..27748 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1634.3613.1mRNA_E-siliculosus-1a_F_contig1634.3613.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1634 24337..28873 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1634.3613.1 ID=prot_E-siliculosus-1a_F_contig1634.3613.1|Name=mRNA_E-siliculosus-1a_F_contig1634.3613.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=152bp
MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGL
LLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTS
NLLNIVLGVLLLLTAILYAFAQIVGSAITDTTTVPSDAAPADGQTPFGTF
T*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019365TVP18/Ca-channel_flower