mRNA_E-siliculosus-1a_F_contig1634.3613.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1634.3613.1
Unique NamemRNA_E-siliculosus-1a_F_contig1634.3613.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1634.3613.1 vs. uniprot
Match: D8LKG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG3_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 5.650e-96
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 3 
Query:   33 MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGLLLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTSNLLNIVLGVLLLLTAILYAFAQIVGSAITDTTTVPSDAAPADGQTPFGTFT 485
            MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGLLLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTSNLLNIVLGVLLLLTAILYAFAQIVGSAITDTTTVPSDAAPADGQTPFGTFT
Sbjct:    1 MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGLLLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTSNLLNIVLGVLLLLTAILYAFAQIVGSAITDTTTVPSDAAPADGQTPFGTFT 151
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1634.3613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKG3_ECTSI5.650e-96100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1634contigE-siliculosus-1a_F_contig1634:24337..28873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size456
Model size1613
Exons5
Ec32 orthologEc-16_002860.1
Ec32 ortholog descriptionTVP18/Calcium channel flower
Hectar predicted targeting categorysignal anchor
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928144.1840394-UTR-E-siliculosus-1a_F_contig1634:24336..243681622928144.1840394-UTR-E-siliculosus-1a_F_contig1634:24336..24368Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1634 24337..24368 +
1696318822.112921-UTR-E-siliculosus-1a_F_contig1634:24336..243681696318822.112921-UTR-E-siliculosus-1a_F_contig1634:24336..24368Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1634 24337..24368 +
1622928144.4151623-UTR-E-siliculosus-1a_F_contig1634:27748..288731622928144.4151623-UTR-E-siliculosus-1a_F_contig1634:27748..28873Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1634 27749..28873 +
1696318822.178901-UTR-E-siliculosus-1a_F_contig1634:27748..288731696318822.178901-UTR-E-siliculosus-1a_F_contig1634:27748..28873Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1634 27749..28873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928144.1991568-CDS-E-siliculosus-1a_F_contig1634:24368..243891622928144.1991568-CDS-E-siliculosus-1a_F_contig1634:24368..24389Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1634 24369..24389 +
1696318822.1230469-CDS-E-siliculosus-1a_F_contig1634:24368..243891696318822.1230469-CDS-E-siliculosus-1a_F_contig1634:24368..24389Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1634 24369..24389 +
1622928144.2100449-CDS-E-siliculosus-1a_F_contig1634:25293..254671622928144.2100449-CDS-E-siliculosus-1a_F_contig1634:25293..25467Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1634 25294..25467 +
1696318822.1325092-CDS-E-siliculosus-1a_F_contig1634:25293..254671696318822.1325092-CDS-E-siliculosus-1a_F_contig1634:25293..25467Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1634 25294..25467 +
1622928144.2780073-CDS-E-siliculosus-1a_F_contig1634:26593..267101622928144.2780073-CDS-E-siliculosus-1a_F_contig1634:26593..26710Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1634 26594..26710 +
1696318822.1426551-CDS-E-siliculosus-1a_F_contig1634:26593..267101696318822.1426551-CDS-E-siliculosus-1a_F_contig1634:26593..26710Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1634 26594..26710 +
1622928144.2930102-CDS-E-siliculosus-1a_F_contig1634:27186..272401622928144.2930102-CDS-E-siliculosus-1a_F_contig1634:27186..27240Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1634 27187..27240 +
1696318822.1541271-CDS-E-siliculosus-1a_F_contig1634:27186..272401696318822.1541271-CDS-E-siliculosus-1a_F_contig1634:27186..27240Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1634 27187..27240 +
1622928144.3063056-CDS-E-siliculosus-1a_F_contig1634:27658..277481622928144.3063056-CDS-E-siliculosus-1a_F_contig1634:27658..27748Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1634 27659..27748 +
1696318822.168583-CDS-E-siliculosus-1a_F_contig1634:27658..277481696318822.168583-CDS-E-siliculosus-1a_F_contig1634:27658..27748Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1634 27659..27748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1634.3613.1prot_E-siliculosus-1a_F_contig1634.3613.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1634 24369..27748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1634.3613.1

>prot_E-siliculosus-1a_F_contig1634.3613.1 ID=prot_E-siliculosus-1a_F_contig1634.3613.1|Name=mRNA_E-siliculosus-1a_F_contig1634.3613.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=152bp
MPEFHFMESDWGIHAKRGGSICTATSLACTVVGFIFWRWFGAVLSLAIGL
LLATFEVPFVYKCFEPCRRLETILNDTLKFSIPAVRAVLYLCLAIVAFTS
NLLNIVLGVLLLLTAILYAFAQIVGSAITDTTTVPSDAAPADGQTPFGTF
T*
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mRNA from alignment at E-siliculosus-1a_F_contig1634:24337..28873+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1634.3613.1 ID=mRNA_E-siliculosus-1a_F_contig1634.3613.1|Name=mRNA_E-siliculosus-1a_F_contig1634.3613.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4537bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1634:24337..28873+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGAGGAGCAGAGAGAGCTGACAGCAGACAGCATGCCGGAATTCCACTTC
ATGGTGAGGGGGTGCCTGCCTTGCACGAACGTGATTTGGTTCGGCCGTTT
GGTTTTGTCGTGGCGGCAAAAAATTGCTGCCACGATATGAGAAAAGAAGC
GCGTGCTTGTAGATACATACCGGTGTTGCGAGCAGTTCTCGAGTCCGTTC
CACATGCCAGTGCTGCTGGCACAAGGGGTCTGGCACGCAAGCAGGTCTCG
TGCAAGTGAAATATTCCCGTGTGCTTGGCTTCTTCTCGTCGTAAATAGTG
GGAAGAGCACGACCTCATTGCTCGCCCGCGCAATGGGCGAGAAAGTGAGT
CTCTCCGCCACTGCCCGTTGAGCGTAGAGCCAACCAGCGACCTGCGGGCA
GAGACAGCAGTAGCGGAGAGGGACAGCGATCGGTGTGGTGTTGGTGGTGT
GTTGTTCAACCTCTCCTGTTGGAGGAAGGGGACAAGGAGACCCTTTCTCG
TCGGCAGCTCTCGTCGGGCCCCGCGGAACATTATTCAATGTTTCCTACTT
CTAAGTGCTATTTTTGCTTGAAAGGATTCTAGGTTTTACGGACCGCTCGT
TCACCACCTACAACCGTGACCGCGTGATGATGTCCAACCATTGTGCTGCG
TTTCTCGTTGTGTTGTGCGACACTCCCTTTCCGTACGATAAGTCTCGTGT
TTTGGCTGCTTCATGCCCACACTTCCATCCGATTGTTGGTACTGTTTTGC
GAACCCTCAAAGACCGCGATTTCCAACCCCTTGCTGTATGCGCAGTACTG
CTGTTGCACCAAAGCATTTTGGATGGATCTGCATTAGTTTTTGCAGCAAT
ATTTCTGTAACCCGATCGGACGCAAGTCCTTCCATACGCGTGGCTGGTGC
GCCCAGGAGCCTCTCTCATTTTATTTTTTCTTGATTTTTTTTTGTTCCCT
TTTCCAGGAATCGGACTGGGGGATCCACGCCAAGCGAGGCGGGAGCATCT
GCACCGCCACGTCGCTGGCGTGCACGGTGGTCGGGTTCATCTTCTGGCGC
TGGTTCGGGGCCGTCCTTTCTCTCGCGATCGGCCTTCTCTTGGCCACGTT
TGAAGTGCCCTTCGTCTACAAATGTTTCGAGGTGATTTTTTTTGTGTTTG
TTTCTTCCTCCCGGAGTCACGCACTGCACGTGTACGAGCATCCTGGGAAG
CAGTTGTGTGCATCTCCCTCATGGAAACTGCTGTGGCTGGATGGCACACC
ACGATCAGAGGGGAGGCCGACAACAACACGGCGATCAAGCCACTGAGGCA
GCGGCATCCTCTGTATCACGGGGACCCTGTGTGTTGAACCCCCTGTGGGG
GGCGGGCCTCTTGCACTGCTTCAACTCCAGTTTCGCTTGCATGCACTCCT
AACAAATTGGCTGCACAGTAAACGCTTGAAGTTGACACTGCTTCAGAGCC
AGCGTGACGAAATTATCTGTTCACGATGTTCCCGGTGCATATAGAACGGA
TGTATCGGTTGGATCCTTCAATAATCGCCCTAGTGCCATAGTCGTGCATG
CCGTAGTCGTTACACCAATGGCGTCGCATCCGTCCGAAGTCGGGATGGAG
CACGCCGGGTTTTCACCGGACCACGCTAGCACATCACCAAGCGCGAAGCG
CCGTGAGGTGTACTCGGCGAGTCGCATGGGTGCGGTAATTCGCCTTGCGA
ACGGGAGCAAGGGGAATGCTGGAGCTGTGCTCGACCGAGGACAGCGGTAC
CAAGCCGTTGTGGCGATGTCAAGTCTGAGGGCCCTTTCGTGACTCAAGCA
ACACGAGGCCGAAGCGTTTTGGGCCCAATCACACAACGCACTGCCAAAGC
CTTGCAGACAGAAACATGCCATGGATGCTGGATCAGCGCAAGTAACCGTG
TCTCCTCGAAGACCAGAGGGCAACAAGCAGCAGCATCCGCTTTCTTGCCG
AACGTGATGACTCCTCGGCCCCTTCTCTGGTCTTCCTCCCCGCCTTTCTC
TCTCTAGCGCCATGCCTTTCGGTACCCCAAGAAGGCGTGTCCTACCTGTT
CCTCTTTGGTTACACTCCTGCTGCACCCCGCCCTCGTTCGCGTCACCCCG
TTTTGTACCCAAAGCGTCCGGCCCCACAGCCGTGCCGACGCTGGAGACTT
ATCTTAAAACGAGACCGGAACGCTTTGCTTGGCTGGCCCTCTTTGTTTTC
GCTGCTGCTGTACGCCGCCCTCCCCTTACCCTACACCATAAAACGTGTGC
CCCACAGCCGTGCCGACGGCTGGAGACGATCTTAAACGACACCCTGAAGT
TCAGTATTCCGGCCGTGCGCGCGGTCCTGTACTTGTGCCTCGCCATCGTC
GCCTTCACGTCAAATTTGCTGAACGTGAGTCCTCAACACACGCGTATTGT
TGTCGCAAGGTTTTTGTCTCTTTCTTGTACCTGGTGTGCGACGAGTTTTC
CTGTTGCCGCGTTTCCAACAGCTAAATCCGGGAGAGATAGGGGCATCTTT
GAGTCGGATCGTTTTCTTCGTTGTTTTGCCTCTGCCAGCGTCCGCCTGAG
TGTCAAAAAACATATGTAGGGATACATACACGACATGGCAAAGTCGCCGG
TAGTTTTGGCTTCTGGGGTGCGTGTCGACTCTAGACAACGGTAGGAAAAT
ATTAATGCAAGCCTTTTTTTCTTGATTTTTCTCCGATTCCAGAGTCACAC
CCCGGGGGAAAAGGTTTCGCGGAACCCCCTTCCCGCCTTCTGCCCGACGT
TGCCATGATCGCCACTTGATGCCCCGTTCCGCTCCTTTTTGGTGGGCCGT
CTCTTTTCGTGCTGGCGCCTTTCTTTCTATTGACGGTTTTTCCCTCCCAG
ATTGTACTTGGGGTCCTGCTACTTCTCACGGCGATACTCTACGCGTTTGC
TCAGGTGACCACTTTGACCTCTTGCGCATGTATGTCTCTCTACGTCCAAA
CTGCTGTCCTTTTTGTCGCTTCGTCGGGAACGGCCATTCGTAGCTAGGGT
CTGGTGGTAGGGCGGCGAGTTTCGTGAGAGGCAATTGCGTACCGTTGAGA
CTTGTACGTGCTCGATTGGGGTGTTGATTGCTCAGGTGCATTTTTTCTTC
TCTTCGTTTCTCTCTCTCTGTCTCTACCCCCCTCTCTCTCTGTGTGTTGT
TCATCTTCGTCTTTCTCTCTTCTGGGTGTGTCTCTCTCAATCCACTTGTG
CATACAACATCACCAGCCATGCGTGTTGTGTACCACGCCCTTGCCCCCAA
ACCTCGACCCCCCCCCCCCTCGCGTGCCTTTTCCCAACGCCCTGCCGTGC
CTCACTCGTGCACTGAAAAAAGATCGTGGGGTCGGCAATCACGGACACAA
CCACGGTGCCCTCAGACGCGGCGCCAGCCGACGGTCAGACTCCCTTCGGG
ACCTTCACATAAGAGGAGATGATGGATGATGGATGATGGATGGGCGTAGC
CTAGCCCAAACGGTTGTGTGGAGAGATTCAACCCCGGGATTCACCTCCTT
TCACGTTTAATATGGCAAGGGGTTGTACACGTAAAATGTCGGAATTTTCC
ACGTCAGTTTCAATGTATCAATTCACGGGTGCTTTTAAGGGTGCGCTCGT
GCGGCGGGTTTCAAGCTGGGATGCGACTGTAGGTCCAGAGCCTTCTTCTT
GAAGGAGGGAATCGTCTTGATCTTGAGAGACGGGGTGGGGTCGCGGGCAC
CGCGGGTTAAAGTAGAGTGTTGCTTGTGTTTGGCTGAGCCCTCCCCCGAT
CAGGGGTTGTGTTGGGGGCGCTTTTCGCCCGCCCACCCCTCCCTGAGAGG
GCAATGGGGGAGGGGCAGCATGATATAAGGCTTGAAAGGAGGCTTGGTAG
ATTAGGTTCCACCCTTTGGGTCCAAGCGCTCCCTGCGCAAGAAGGTTGCT
TGGATCTAGAGATCGTGTGTCCATAGCCCCCTCTCGCTGCTTTCTCCGGT
AATAATATACTTGAGTGTTTTTTCTGTTTGGGTTGCACTCGCTGCTGCTG
CGGCTGCAGCTTCCACAGAATGTCAGGAGATCGTGGCAGGTAAATCTGTA
CCGATGCATCTCCCAAGTCCGCGCATCGCGATGTTTCTAGCGCGCCCGTC
TTTTTCTGATAGCACTCATTTGTTGGGATTCGGATGTGATGCTATCATCG
CCCTTTCTACGGGCCACACGCCACTTGGAAGTGTTGAAAAGGGTTCGCGT
AATGGCCATGTAGATGCACAGGTGGGGACGACTTCAGCACCGTACATCGT
GTAGTCAGCGCGTTAGGTTTTGCGCAACACTTGAGAAAAACTCGGGTGTT
GTATGGTTTTAAAAACATGTGCAAGAAAGTACCTTCGTGAAAGAAACGCG
GTTTTCGACAACGGGAGCGCGGAACAGAACAACGGCACCATGCACACGTT
CACTAGCATGCACCCAATTCGGCAACGGGAGAAAACAACACAGACGTTTT
CCCGTTCCGTGTGTGCGTTAAACTCGCAGGTCGACATTTGCAGGTTAGAC
AAGAGGTTGCGTATCCAACATTATCATTAGTTTCATG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1634:24337..28873+

>mRNA_E-siliculosus-1a_F_contig1634.3613.1 ID=mRNA_E-siliculosus-1a_F_contig1634.3613.1|Name=mRNA_E-siliculosus-1a_F_contig1634.3613.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1634:24337..28873+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCGGAATTCCACTTCATGATGCCGGAATTCCACTTCATGGAATCGGA
CTGGGGGATCCACGCCAAGCGAGGCGGGAGCATCTGCACCGCCACGTCGC
TGGCGTGCACGGTGGTCGGGTTCATCTTCTGGCGCTGGTTCGGGGCCGTC
CTTTCTCTCGCGATCGGCCTTCTCTTGGCCACGTTTGAAGTGCCCTTCGT
CTACAAATGTTTCGAGGAATCGGACTGGGGGATCCACGCCAAGCGAGGCG
GGAGCATCTGCACCGCCACGTCGCTGGCGTGCACGGTGGTCGGGTTCATC
TTCTGGCGCTGGTTCGGGGCCGTCCTTTCTCTCGCGATCGGCCTTCTCTT
GGCCACGTTTGAAGTGCCCTTCGTCTACAAATGTTTCGAGCCGTGCCGAC
GGCTGGAGACGATCTTAAACGACACCCTGAAGTTCAGTATTCCGGCCGTG
CGCGCGGTCCTGTACTTGTGCCTCGCCATCGTCGCCTTCACGTCAAATTT
GCTGAACCCGTGCCGACGGCTGGAGACGATCTTAAACGACACCCTGAAGT
TCAGTATTCCGGCCGTGCGCGCGGTCCTGTACTTGTGCCTCGCCATCGTC
GCCTTCACGTCAAATTTGCTGAACATTGTACTTGGGGTCCTGCTACTTCT
CACGGCGATACTCTACGCGTTTGCTCAGATTGTACTTGGGGTCCTGCTAC
TTCTCACGGCGATACTCTACGCGTTTGCTCAGATCGTGGGGTCGGCAATC
ACGGACACAACCACGGTGCCCTCAGACGCGGCGCCAGCCGACGGTCAGAC
TCCCTTCGGGACCTTCACATAAATCGTGGGGTCGGCAATCACGGACACAA
CCACGGTGCCCTCAGACGCGGCGCCAGCCGACGGTCAGACTCCCTTCGGG
ACCTTCACATAA
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