prot_E-siliculosus-1a_F_contig16023.3468.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig16023.3468.1
Unique Nameprot_E-siliculosus-1a_F_contig16023.3468.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length142
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: W1N7J4_9GAMM (HTH lysR-type domain-containing protein n=1 Tax=Halomonas huangheensis TaxID=1178482 RepID=W1N7J4_9GAMM)

HSP 1 Score: 236 bits (601), Expect = 1.750e-75
Identity = 104/141 (73.76%), Postives = 124/141 (87.94%), Query Frame = 0
Query:    1 MFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQAFVEEFIHYMDGYNEDTRALCGD 141
            M+CG HHPLF+ D++ LE LANE+FVSFSSD+IGGSLSPLTIFRDQH FTGKV+A SP YDEI+RLLVAGYGIGCLPQHSA++EV + RL++LPP+ G+CD+ELY+LWKK+ALTL  QAFV+EFI YMD +NED RA C D
Sbjct:  170 MYCGVHHPLFDSDSVGLEALANEEFVSFSSDMIGGSLSPLTIFRDQHGFTGKVIATSPDYDEIVRLLVAGYGIGCLPQHSADVEVARARLKKLPPDGGICDIELYLLWKKDALTLAGQAFVDEFIRYMDRFNEDERAKCSD 310          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A1M7G725_9GAMM (DNA-binding transcriptional regulator, LysR family n=1 Tax=Halomonas cupida TaxID=44933 RepID=A0A1M7G725_9GAMM)

HSP 1 Score: 231 bits (590), Expect = 7.390e-74
Identity = 104/139 (74.82%), Postives = 123/139 (88.49%), Query Frame = 0
Query:    1 MFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQAFVEEFIHYMDGYNEDTRALC 139
            MFCG+ H LF  +T  LE LANEDFVSFSSD+IGGSLSPLTIFRDQH FTGKV+A SP+YDEI+RLL+AGYGIGCLP+HSA +EV++GRLR LPPEDG+CDVEL++LWKK+ALTL  QAFV+EFIHYMD +++D RA C
Sbjct:  170 MFCGKGHHLFSAETTRLEDLANEDFVSFSSDIIGGSLSPLTIFRDQHGFTGKVIATSPNYDEIVRLLIAGYGIGCLPRHSAGLEVDRGRLRMLPPEDGICDVELHMLWKKDALTLAGQAFVDEFIHYMDDHDDDERARC 308          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A0H4WHM3_9BORD (HTH-type transcriptional regulator CysL n=5 Tax=Bordetella hinzii TaxID=103855 RepID=A0A0H4WHM3_9BORD)

HSP 1 Score: 167 bits (422), Expect = 2.190e-48
Identity = 77/137 (56.20%), Postives = 103/137 (75.18%), Query Frame = 0
Query:    1 MFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQA-FVEEFIHYMDGYNEDTR 136
            +FCG +H LF R  I +E L  E+FVSF+SD +G SLSPLTIFRDQ  F+G+VVA S  +DE+ RLL+AGYGIGCLP+HS  +++E+GRL RLPP +GVC V+L++LW ++A   PA+A F++ F  Y+DGY    R
Sbjct:  179 LFCGRNHRLFGRQDIRIEELLGENFVSFASDALGDSLSPLTIFRDQRGFSGRVVASSTQHDEVKRLLIAGYGIGCLPEHSVRLDLEQGRLWRLPPGEGVCSVDLHLLWHRDAHRTPAEAAFLKHFRDYIDGYPMSER 315          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: J4YX46_9BURK (LysR family transcriptional regulator n=5 Tax=Achromobacter TaxID=222 RepID=J4YX46_9BURK)

HSP 1 Score: 164 bits (416), Expect = 2.020e-47
Identity = 75/137 (54.74%), Postives = 103/137 (75.18%), Query Frame = 0
Query:    1 MFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTR 136
            +FCG +H LF +  I +E L  E+FVSF+SD +G SLSPLTIFRDQ  F+G++VA S  +DE+ RLL+AG+GIGCLP+HS   ++E+GRL RLPP +GVC VEL++LW ++A   PA+ AF++ F  Y+DGY+   R
Sbjct:  181 LFCGRNHALFGKPDIRIEDLLGENFVSFASDALGDSLSPLTIFRDQRGFSGRIVASSTQHDEVKRLLIAGFGIGCLPEHSVQADLEQGRLWRLPPGEGVCSVELHLLWHRDAQLTPAETAFLKHFRDYIDGYSMAER 317          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A4Q1HJH5_9BURK (LysR family transcriptional regulator n=1 Tax=Achromobacter aloeverae TaxID=1750518 RepID=A0A4Q1HJH5_9BURK)

HSP 1 Score: 163 bits (412), Expect = 7.460e-47
Identity = 77/142 (54.23%), Postives = 104/142 (73.24%), Query Frame = 0
Query:    1 MFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTRALCGD 141
            +FCG +H LF +  I +E L  E+FVSF+SD +G SLSPLTIFRDQ  F+G+VVA S  +DE+ RLLVAG+GIGCLP+HS   ++ +GRL RLPP +GVC V+L++LW ++A   PA+ AF++ F  Y+DGY+   R   GD
Sbjct:  179 LFCGRNHALFGKPDIHIEDLLGENFVSFASDALGDSLSPLTIFRDQRGFSGRVVATSTQHDEVKRLLVAGFGIGCLPEHSVQADLAEGRLWRLPPGEGVCLVDLHLLWHRDAQRTPAEDAFLKHFRGYIDGYSMAERLAQGD 320          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A9IN41_BORPD (Transcriptional regulator, LysR-family n=3 Tax=Bordetella petrii TaxID=94624 RepID=A9IN41_BORPD)

HSP 1 Score: 162 bits (409), Expect = 3.770e-46
Identity = 71/140 (50.71%), Postives = 104/140 (74.29%), Query Frame = 0
Query:    1 MFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTRALC 139
            +FCG +H LF +  + ++ L  E+FVSF+SD +G SLSPLTIFRDQ  F+G++VA S  +DE+ RLL+AG+GIGCLP+HS   ++E+GRL RLPP +GVC V+L++LW ++A    A+ AF++ F  Y+DG++   R +C
Sbjct:  205 LFCGRNHALFGKQDVRIDDLLGENFVSFASDALGDSLSPLTIFRDQRGFSGRIVASSTQHDEVKRLLIAGFGIGCLPEHSVQADIEQGRLWRLPPGEGVCTVDLHLLWHRDAQPTQAEMAFLKHFRDYIDGHSMAERLVC 344          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A6S7A583_9BURK (HTH-type transcriptional regulator ArgP n=2 Tax=Achromobacter TaxID=222 RepID=A0A6S7A583_9BURK)

HSP 1 Score: 159 bits (401), Expect = 3.160e-45
Identity = 73/137 (53.28%), Postives = 101/137 (73.72%), Query Frame = 0
Query:    1 MFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTR 136
            +FCG +H LF R  I +E L  E+FVSF+SD +G SLSPLTIFRDQ  F+G++VA S  +DE+ RLL+AG+GIGCLP+HS   ++ +GRL RLPP +GVC V+L++LW ++A   PA+ AF++ F  Y+D Y+   R
Sbjct:  181 LFCGRNHALFGRQDIRIEDLLGENFVSFASDALGDSLSPLTIFRDQRGFSGRIVASSTHHDEVKRLLIAGFGIGCLPEHSVQADLAQGRLWRLPPGEGVCSVDLHLLWHRDAQHTPAEVAFLKHFRDYIDRYSMAER 317          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A0D6I085_ALCXX (CysJI operon transcriptional activator n=34 Tax=Proteobacteria TaxID=1224 RepID=A0A0D6I085_ALCXX)

HSP 1 Score: 158 bits (399), Expect = 6.940e-45
Identity = 73/137 (53.28%), Postives = 100/137 (72.99%), Query Frame = 0
Query:    1 MFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTR 136
            +FCG +H LF R  + +E L  E+FVSF+SD +G SLSPLTIFRDQ  F+G+VVA S  +DE+ RLL+AG+GIGCLP+HS   ++ +GRL RLPP +GVC V+L++LW ++A   PA+ AF+  F  Y+DG+    R
Sbjct:  180 LFCGRNHALFGRQDLRIEDLMGENFVSFASDALGDSLSPLTIFRDQRGFSGRVVATSTQHDEVKRLLIAGFGIGCLPEHSVRRDLAEGRLWRLPPGEGVCSVDLHLLWHRDAPRSPAEKAFLTHFRDYIDGFTMAER 316          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: UPI00136E6FD8 (LysR family transcriptional regulator n=1 Tax=Achromobacter aestuarii TaxID=2511204 RepID=UPI00136E6FD8)

HSP 1 Score: 157 bits (397), Expect = 1.350e-44
Identity = 73/141 (51.77%), Postives = 103/141 (73.05%), Query Frame = 0
Query:    1 MFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTRALCG 140
            +FCG +H LF R  + +E L +E+FVSF+SD +G SLSPLTIFRDQ  F+G+V+A S  +DE+ RLL+AG GIGCLP+HS   ++E+GRL RLPP +GVC V+L++LW +NA    A+ AF++ F   +DG++ + R   G
Sbjct:  181 LFCGRNHALFGRPDLRIEDLMSENFVSFASDTLGDSLSPLTIFRDQRGFSGRVIATSNQHDEVKRLLIAGLGIGCLPEHSVQRDLEEGRLWRLPPGEGVCSVDLHLLWHRNAQRSSAELAFLKCFRDCIDGFSMEERLAAG 321          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: UPI001903DF1F (LysR family transcriptional regulator n=2 Tax=Pseudomonas TaxID=286 RepID=UPI001903DF1F)

HSP 1 Score: 155 bits (392), Expect = 7.740e-44
Identity = 72/140 (51.43%), Postives = 99/140 (70.71%), Query Frame = 0
Query:    1 MFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTRALC 139
            +FCG++H L+ +  +T+E L  E+FVSF+SD +G SLSPLTIFRDQ  F+G VVA S  YDE+ RLLVAG+GIGCLP+HS   ++E+GRL RLPP++GVC   LY LW ++A    A+  F++ F  +++ Y    R L 
Sbjct:  178 LFCGQYHDLYGKSDLTMEDLLGENFVSFTSDALGDSLSPLTIFRDQRGFSGTVVASSSQYDEVKRLLVAGFGIGCLPEHSVQADLEEGRLWRLPPDEGVCTANLYFLWHEDAQRTAAERTFLDAFKAHIETYPLPHRLLA 317          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W1N7J4_9GAMM1.750e-7573.76HTH lysR-type domain-containing protein n=1 Tax=Ha... [more]
A0A1M7G725_9GAMM7.390e-7474.82DNA-binding transcriptional regulator, LysR family... [more]
A0A0H4WHM3_9BORD2.190e-4856.20HTH-type transcriptional regulator CysL n=5 Tax=Bo... [more]
J4YX46_9BURK2.020e-4754.74LysR family transcriptional regulator n=5 Tax=Achr... [more]
A0A4Q1HJH5_9BURK7.460e-4754.23LysR family transcriptional regulator n=1 Tax=Achr... [more]
A9IN41_BORPD3.770e-4650.71Transcriptional regulator, LysR-family n=3 Tax=Bor... [more]
A0A6S7A583_9BURK3.160e-4553.28HTH-type transcriptional regulator ArgP n=2 Tax=Ac... [more]
A0A0D6I085_ALCXX6.940e-4553.28CysJI operon transcriptional activator n=34 Tax=Pr... [more]
UPI00136E6FD81.350e-4451.77LysR family transcriptional regulator n=1 Tax=Achr... [more]
UPI001903DF1F7.740e-4451.43LysR family transcriptional regulator n=2 Tax=Pseu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005119LysR, substrate-bindingPFAMPF03466LysR_substratecoord: 2..124
e-value: 4.6E-17
score: 62.1
NoneNo IPR availableGENE3D3.40.190.290coord: 1..133
e-value: 5.0E-13
score: 50.9
NoneNo IPR availablePANTHERPTHR30126UNCHARACTERIZED HTH-TYPE TRANSCRIPTIONAL REGULATOR YEIE-RELATEDcoord: 3..125
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 2..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig16023contigE-siliculosus-1a_F_contig16023:448..873 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig16023.3468.1mRNA_E-siliculosus-1a_F_contig16023.3468.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig16023 448..894 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig16023.3468.1 ID=prot_E-siliculosus-1a_F_contig16023.3468.1|Name=mRNA_E-siliculosus-1a_F_contig16023.3468.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=142bp
MFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFT
GKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVC
DVELYILWKKNALTLPAQAFVEEFIHYMDGYNEDTRALCGD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005119LysR_subst-bd