mRNA_E-siliculosus-1a_F_contig16023.3468.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig16023.3468.1
Unique NamemRNA_E-siliculosus-1a_F_contig16023.3468.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: W1N7J4_9GAMM (HTH lysR-type domain-containing protein n=1 Tax=Halomonas huangheensis TaxID=1178482 RepID=W1N7J4_9GAMM)

HSP 1 Score: 247 bits (631), Expect = 6.580e-80
Identity = 110/148 (74.32%), Postives = 130/148 (87.84%), Query Frame = 1
Query:    1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQAFVEEFIHYMDGYNEDTRALCGD 444
            F RQRYSM+CG HHPLF+ D++ LE LANE+FVSFSSD+IGGSLSPLTIFRDQH FTGKV+A SP YDEI+RLLVAGYGIGCLPQHSA++EV + RL++LPP+ G+CD+ELY+LWKK+ALTL  QAFV+EFI YMD +NED RA C D
Sbjct:  163 FLRQRYSMYCGVHHPLFDSDSVGLEALANEEFVSFSSDMIGGSLSPLTIFRDQHGFTGKVIATSPDYDEIVRLLVAGYGIGCLPQHSADVEVARARLKKLPPDGGICDIELYLLWKKDALTLAGQAFVDEFIRYMDRFNEDERAKCSD 310          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A1M7G725_9GAMM (DNA-binding transcriptional regulator, LysR family n=1 Tax=Halomonas cupida TaxID=44933 RepID=A0A1M7G725_9GAMM)

HSP 1 Score: 242 bits (617), Expect = 7.950e-78
Identity = 109/146 (74.66%), Postives = 129/146 (88.36%), Query Frame = 1
Query:    1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQAFVEEFIHYMDGYNEDTRALC 438
            F RQRY+MFCG+ H LF  +T  LE LANEDFVSFSSD+IGGSLSPLTIFRDQH FTGKV+A SP+YDEI+RLL+AGYGIGCLP+HSA +EV++GRLR LPPEDG+CDVEL++LWKK+ALTL  QAFV+EFIHYMD +++D RA C
Sbjct:  163 FLRQRYAMFCGKGHHLFSAETTRLEDLANEDFVSFSSDIIGGSLSPLTIFRDQHGFTGKVIATSPNYDEIVRLLIAGYGIGCLPRHSAGLEVDRGRLRMLPPEDGICDVELHMLWKKDALTLAGQAFVDEFIHYMDDHDDDERARC 308          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A0H4WHM3_9BORD (HTH-type transcriptional regulator CysL n=5 Tax=Bordetella hinzii TaxID=103855 RepID=A0A0H4WHM3_9BORD)

HSP 1 Score: 175 bits (444), Expect = 1.420e-51
Identity = 81/144 (56.25%), Postives = 108/144 (75.00%), Query Frame = 1
Query:    1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQA-FVEEFIHYMDGYNEDTR 429
            F  QRY++FCG +H LF R  I +E L  E+FVSF+SD +G SLSPLTIFRDQ  F+G+VVA S  +DE+ RLL+AGYGIGCLP+HS  +++E+GRL RLPP +GVC V+L++LW ++A   PA+A F++ F  Y+DGY    R
Sbjct:  172 FLHQRYALFCGRNHRLFGRQDIRIEELLGENFVSFASDALGDSLSPLTIFRDQRGFSGRVVASSTQHDEVKRLLIAGYGIGCLPEHSVRLDLEQGRLWRLPPGEGVCSVDLHLLWHRDAHRTPAEAAFLKHFRDYIDGYPMSER 315          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: J4YX46_9BURK (LysR family transcriptional regulator n=5 Tax=Achromobacter TaxID=222 RepID=J4YX46_9BURK)

HSP 1 Score: 173 bits (439), Expect = 9.390e-51
Identity = 79/144 (54.86%), Postives = 109/144 (75.69%), Query Frame = 1
Query:    1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTR 429
            F +QRY++FCG +H LF +  I +E L  E+FVSF+SD +G SLSPLTIFRDQ  F+G++VA S  +DE+ RLL+AG+GIGCLP+HS   ++E+GRL RLPP +GVC VEL++LW ++A   PA+ AF++ F  Y+DGY+   R
Sbjct:  174 FLQQRYALFCGRNHALFGKPDIRIEDLLGENFVSFASDALGDSLSPLTIFRDQRGFSGRIVASSTQHDEVKRLLIAGFGIGCLPEHSVQADLEQGRLWRLPPGEGVCSVELHLLWHRDAQLTPAETAFLKHFRDYIDGYSMAER 317          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A4Q1HJH5_9BURK (LysR family transcriptional regulator n=1 Tax=Achromobacter aloeverae TaxID=1750518 RepID=A0A4Q1HJH5_9BURK)

HSP 1 Score: 172 bits (435), Expect = 3.460e-50
Identity = 81/149 (54.36%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTRALCGD 444
            F +QRY++FCG +H LF +  I +E L  E+FVSF+SD +G SLSPLTIFRDQ  F+G+VVA S  +DE+ RLLVAG+GIGCLP+HS   ++ +GRL RLPP +GVC V+L++LW ++A   PA+ AF++ F  Y+DGY+   R   GD
Sbjct:  172 FLQQRYALFCGRNHALFGKPDIHIEDLLGENFVSFASDALGDSLSPLTIFRDQRGFSGRVVATSTQHDEVKRLLVAGFGIGCLPEHSVQADLAEGRLWRLPPGEGVCLVDLHLLWHRDAQRTPAEDAFLKHFRGYIDGYSMAERLAQGD 320          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A9IN41_BORPD (Transcriptional regulator, LysR-family n=3 Tax=Bordetella petrii TaxID=94624 RepID=A9IN41_BORPD)

HSP 1 Score: 171 bits (432), Expect = 1.790e-49
Identity = 75/147 (51.02%), Postives = 110/147 (74.83%), Query Frame = 1
Query:    1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTRALC 438
            F +QRY++FCG +H LF +  + ++ L  E+FVSF+SD +G SLSPLTIFRDQ  F+G++VA S  +DE+ RLL+AG+GIGCLP+HS   ++E+GRL RLPP +GVC V+L++LW ++A    A+ AF++ F  Y+DG++   R +C
Sbjct:  198 FLQQRYALFCGRNHALFGKQDVRIDDLLGENFVSFASDALGDSLSPLTIFRDQRGFSGRIVASSTQHDEVKRLLIAGFGIGCLPEHSVQADIEQGRLWRLPPGEGVCTVDLHLLWHRDAQPTQAEMAFLKHFRDYIDGHSMAERLVC 344          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A6S7A583_9BURK (HTH-type transcriptional regulator ArgP n=2 Tax=Achromobacter TaxID=222 RepID=A0A6S7A583_9BURK)

HSP 1 Score: 167 bits (424), Expect = 1.470e-48
Identity = 77/144 (53.47%), Postives = 107/144 (74.31%), Query Frame = 1
Query:    1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTR 429
            F +QRY++FCG +H LF R  I +E L  E+FVSF+SD +G SLSPLTIFRDQ  F+G++VA S  +DE+ RLL+AG+GIGCLP+HS   ++ +GRL RLPP +GVC V+L++LW ++A   PA+ AF++ F  Y+D Y+   R
Sbjct:  174 FLQQRYALFCGRNHALFGRQDIRIEDLLGENFVSFASDALGDSLSPLTIFRDQRGFSGRIVASSTHHDEVKRLLIAGFGIGCLPEHSVQADLAQGRLWRLPPGEGVCSVDLHLLWHRDAQHTPAEVAFLKHFRDYIDRYSMAER 317          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A0D6I085_ALCXX (CysJI operon transcriptional activator n=34 Tax=Proteobacteria TaxID=1224 RepID=A0A0D6I085_ALCXX)

HSP 1 Score: 166 bits (421), Expect = 4.590e-48
Identity = 77/144 (53.47%), Postives = 105/144 (72.92%), Query Frame = 1
Query:    1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTR 429
            F  QRY++FCG +H LF R  + +E L  E+FVSF+SD +G SLSPLTIFRDQ  F+G+VVA S  +DE+ RLL+AG+GIGCLP+HS   ++ +GRL RLPP +GVC V+L++LW ++A   PA+ AF+  F  Y+DG+    R
Sbjct:  173 FLHQRYALFCGRNHALFGRQDLRIEDLMGENFVSFASDALGDSLSPLTIFRDQRGFSGRVVATSTQHDEVKRLLIAGFGIGCLPEHSVRRDLAEGRLWRLPPGEGVCSVDLHLLWHRDAPRSPAEKAFLTHFRDYIDGFTMAER 316          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: UPI00136E6FD8 (LysR family transcriptional regulator n=1 Tax=Achromobacter aestuarii TaxID=2511204 RepID=UPI00136E6FD8)

HSP 1 Score: 166 bits (419), Expect = 8.930e-48
Identity = 77/148 (52.03%), Postives = 108/148 (72.97%), Query Frame = 1
Query:    1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTRALCG 441
            F  QRY++FCG +H LF R  + +E L +E+FVSF+SD +G SLSPLTIFRDQ  F+G+V+A S  +DE+ RLL+AG GIGCLP+HS   ++E+GRL RLPP +GVC V+L++LW +NA    A+ AF++ F   +DG++ + R   G
Sbjct:  174 FLHQRYALFCGRNHALFGRPDLRIEDLMSENFVSFASDTLGDSLSPLTIFRDQRGFSGRVIATSNQHDEVKRLLIAGLGIGCLPEHSVQRDLEEGRLWRLPPGEGVCSVDLHLLWHRNAQRSSAELAFLKCFRDCIDGFSMEERLAAG 321          
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A3S4NTG7_9BURK (HTH-type transcriptional regulator AbgR n=17 Tax=Achromobacter TaxID=222 RepID=A0A3S4NTG7_9BURK)

HSP 1 Score: 164 bits (414), Expect = 3.800e-47
Identity = 75/147 (51.02%), Postives = 106/147 (72.11%), Query Frame = 1
Query:    1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTRALC 438
            F +QRY++FCG++HPLF R  I +E L +E+FVSF+SD +G SLSPLTIFRDQ  F+G ++A S  +DE+ RLLVAG+GIGCLP+HS   ++ +GRL RLPP +GVC  +L++LW ++A   PA+  F+     ++D Y+   R L 
Sbjct:  164 FLQQRYALFCGKNHPLFGRADIRMEDLLHENFVSFASDALGDSLSPLTIFRDQRGFSGSIIATSSQHDEVKRLLVAGFGIGCLPEHSVEADLAEGRLWRLPPGEGVCAADLHLLWHRDAHRSPAEDLFITALRDHIDSYSLPQRLLA 310          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W1N7J4_9GAMM6.580e-8074.32HTH lysR-type domain-containing protein n=1 Tax=Ha... [more]
A0A1M7G725_9GAMM7.950e-7874.66DNA-binding transcriptional regulator, LysR family... [more]
A0A0H4WHM3_9BORD1.420e-5156.25HTH-type transcriptional regulator CysL n=5 Tax=Bo... [more]
J4YX46_9BURK9.390e-5154.86LysR family transcriptional regulator n=5 Tax=Achr... [more]
A0A4Q1HJH5_9BURK3.460e-5054.36LysR family transcriptional regulator n=1 Tax=Achr... [more]
A9IN41_BORPD1.790e-4951.02Transcriptional regulator, LysR-family n=3 Tax=Bor... [more]
A0A6S7A583_9BURK1.470e-4853.47HTH-type transcriptional regulator ArgP n=2 Tax=Ac... [more]
A0A0D6I085_ALCXX4.590e-4853.47CysJI operon transcriptional activator n=34 Tax=Pr... [more]
UPI00136E6FD88.930e-4852.03LysR family transcriptional regulator n=1 Tax=Achr... [more]
A0A3S4NTG7_9BURK3.800e-4751.02HTH-type transcriptional regulator AbgR n=17 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig16023contigE-siliculosus-1a_F_contig16023:448..894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size426
Model size447
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelGammaproteobacteria
COG Functional cat.K
EggNOG OGs1PMTG@1224,1S7MV@1236,COG0583@1,COG0583@2
EggNOG free text desc.transcriptional regulator
Preferred namecysL_4
Seed eggNOG ortholog1178482.BJB45_19935
Seed ortholog evalue1.2e-60
Seed ortholog score239.2
Taxonomic scopeBacteria
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928119.9325466-CDS-E-siliculosus-1a_F_contig16023:447..8731622928119.9325466-CDS-E-siliculosus-1a_F_contig16023:447..873Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16023 448..873 -
1696318811.8661194-CDS-E-siliculosus-1a_F_contig16023:447..8731696318811.8661194-CDS-E-siliculosus-1a_F_contig16023:447..873Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig16023 448..873 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928120.1089127-UTR-E-siliculosus-1a_F_contig16023:873..8941622928120.1089127-UTR-E-siliculosus-1a_F_contig16023:873..894Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig16023 874..894 -
1696318811.8786333-UTR-E-siliculosus-1a_F_contig16023:873..8941696318811.8786333-UTR-E-siliculosus-1a_F_contig16023:873..894Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig16023 874..894 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig16023.3468.1prot_E-siliculosus-1a_F_contig16023.3468.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig16023 448..873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig16023.3468.1

>prot_E-siliculosus-1a_F_contig16023.3468.1 ID=prot_E-siliculosus-1a_F_contig16023.3468.1|Name=mRNA_E-siliculosus-1a_F_contig16023.3468.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=142bp
MFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFT
GKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVC
DVELYILWKKNALTLPAQAFVEEFIHYMDGYNEDTRALCGD*
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mRNA from alignment at E-siliculosus-1a_F_contig16023:448..894-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig16023.3468.1 ID=mRNA_E-siliculosus-1a_F_contig16023.3468.1|Name=mRNA_E-siliculosus-1a_F_contig16023.3468.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=447bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16023:448..894- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTCTTTCGACAGCGCTATTCTATGTTTTGCGGTGAGCACCATCCTCTTTT CGAGAGAGACACGATTACCTTGGAGACACTGGCGAATGAAGATTTTGTTT CGTTCTCTAGCGATGTGATTGGTGGCAGCCTCTCTCCTTTGACGATATTT CGTGATCAGCATGCTTTTACCGGAAAGGTAGTGGCCATGTCGCCGAGCTA TGATGAAATAATTCGTCTACTGGTAGCAGGTTATGGCATCGGTTGCTTAC CCCAGCATAGTGCGAATATCGAGGTGGAAAAGGGGCGGTTGAGAAGGCTC CCTCCAGAGGATGGTGTCTGCGATGTCGAGCTATATATATTGTGGAAGAA GAATGCCTTAACGCTACCCGCCCAGGCATTTGTTGAAGAGTTCATTCATT ATATGGACGGCTACAATGAGGACACTAGAGCGCTGTGCGGTGACTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig16023:448..894-

>mRNA_E-siliculosus-1a_F_contig16023.3468.1 ID=mRNA_E-siliculosus-1a_F_contig16023.3468.1|Name=mRNA_E-siliculosus-1a_F_contig16023.3468.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16023:448..894- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTTTGCGGTGAGCACCATCCTCTTTTCGAGAGAGACACGATTACCTT
GGAGACACTGGCGAATGAAGATTTTGTTTCGTTCTCTAGCGATGTGATTG
GTGGCAGCCTCTCTCCTTTGACGATATTTCGTGATCAGCATGCTTTTACC
GGAAAGGTAGTGGCCATGTCGCCGAGCTATGATGAAATAATTCGTCTACT
GGTAGCAGGTTATGGCATCGGTTGCTTACCCCAGCATAGTGCGAATATCG
AGGTGGAAAAGGGGCGGTTGAGAAGGCTCCCTCCAGAGGATGGTGTCTGC
GATGTCGAGCTATATATATTGTGGAAGAAGAATGCCTTAACGCTACCCGC
CCAGGCATTTGTTGAAGAGTTCATTCATTATATGGACGGCTACAATGAGG
ACACTAGAGCGCTGTGCGGTGACTGAATGTTTTGCGGTGAGCACCATCCT
CTTTTCGAGAGAGACACGATTACCTTGGAGACACTGGCGAATGAAGATTT
TGTTTCGTTCTCTAGCGATGTGATTGGTGGCAGCCTCTCTCCTTTGACGA
TATTTCGTGATCAGCATGCTTTTACCGGAAAGGTAGTGGCCATGTCGCCG
AGCTATGATGAAATAATTCGTCTACTGGTAGCAGGTTATGGCATCGGTTG
CTTACCCCAGCATAGTGCGAATATCGAGGTGGAAAAGGGGCGGTTGAGAA
GGCTCCCTCCAGAGGATGGTGTCTGCGATGTCGAGCTATATATATTGTGG
AAGAAGAATGCCTTAACGCTACCCGCCCAGGCATTTGTTGAAGAGTTCAT
TCATTATATGGACGGCTACAATGAGGACACTAGAGCGCTGTGCGGTGACT
GA
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