mRNA_E-siliculosus-1a_F_contig16023.3468.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: W1N7J4_9GAMM (HTH lysR-type domain-containing protein n=1 Tax=Halomonas huangheensis TaxID=1178482 RepID=W1N7J4_9GAMM) HSP 1 Score: 247 bits (631), Expect = 6.580e-80 Identity = 110/148 (74.32%), Postives = 130/148 (87.84%), Query Frame = 1
Query: 1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQAFVEEFIHYMDGYNEDTRALCGD 444
F RQRYSM+CG HHPLF+ D++ LE LANE+FVSFSSD+IGGSLSPLTIFRDQH FTGKV+A SP YDEI+RLLVAGYGIGCLPQHSA++EV + RL++LPP+ G+CD+ELY+LWKK+ALTL QAFV+EFI YMD +NED RA C D
Sbjct: 163 FLRQRYSMYCGVHHPLFDSDSVGLEALANEEFVSFSSDMIGGSLSPLTIFRDQHGFTGKVIATSPDYDEIVRLLVAGYGIGCLPQHSADVEVARARLKKLPPDGGICDIELYLLWKKDALTLAGQAFVDEFIRYMDRFNEDERAKCSD 310
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A1M7G725_9GAMM (DNA-binding transcriptional regulator, LysR family n=1 Tax=Halomonas cupida TaxID=44933 RepID=A0A1M7G725_9GAMM) HSP 1 Score: 242 bits (617), Expect = 7.950e-78 Identity = 109/146 (74.66%), Postives = 129/146 (88.36%), Query Frame = 1
Query: 1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQAFVEEFIHYMDGYNEDTRALC 438
F RQRY+MFCG+ H LF +T LE LANEDFVSFSSD+IGGSLSPLTIFRDQH FTGKV+A SP+YDEI+RLL+AGYGIGCLP+HSA +EV++GRLR LPPEDG+CDVEL++LWKK+ALTL QAFV+EFIHYMD +++D RA C
Sbjct: 163 FLRQRYAMFCGKGHHLFSAETTRLEDLANEDFVSFSSDIIGGSLSPLTIFRDQHGFTGKVIATSPNYDEIVRLLIAGYGIGCLPRHSAGLEVDRGRLRMLPPEDGICDVELHMLWKKDALTLAGQAFVDEFIHYMDDHDDDERARC 308
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A0H4WHM3_9BORD (HTH-type transcriptional regulator CysL n=5 Tax=Bordetella hinzii TaxID=103855 RepID=A0A0H4WHM3_9BORD) HSP 1 Score: 175 bits (444), Expect = 1.420e-51 Identity = 81/144 (56.25%), Postives = 108/144 (75.00%), Query Frame = 1
Query: 1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQA-FVEEFIHYMDGYNEDTR 429
F QRY++FCG +H LF R I +E L E+FVSF+SD +G SLSPLTIFRDQ F+G+VVA S +DE+ RLL+AGYGIGCLP+HS +++E+GRL RLPP +GVC V+L++LW ++A PA+A F++ F Y+DGY R
Sbjct: 172 FLHQRYALFCGRNHRLFGRQDIRIEELLGENFVSFASDALGDSLSPLTIFRDQRGFSGRVVASSTQHDEVKRLLIAGYGIGCLPEHSVRLDLEQGRLWRLPPGEGVCSVDLHLLWHRDAHRTPAEAAFLKHFRDYIDGYPMSER 315
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: J4YX46_9BURK (LysR family transcriptional regulator n=5 Tax=Achromobacter TaxID=222 RepID=J4YX46_9BURK) HSP 1 Score: 173 bits (439), Expect = 9.390e-51 Identity = 79/144 (54.86%), Postives = 109/144 (75.69%), Query Frame = 1
Query: 1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTR 429
F +QRY++FCG +H LF + I +E L E+FVSF+SD +G SLSPLTIFRDQ F+G++VA S +DE+ RLL+AG+GIGCLP+HS ++E+GRL RLPP +GVC VEL++LW ++A PA+ AF++ F Y+DGY+ R
Sbjct: 174 FLQQRYALFCGRNHALFGKPDIRIEDLLGENFVSFASDALGDSLSPLTIFRDQRGFSGRIVASSTQHDEVKRLLIAGFGIGCLPEHSVQADLEQGRLWRLPPGEGVCSVELHLLWHRDAQLTPAETAFLKHFRDYIDGYSMAER 317
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A4Q1HJH5_9BURK (LysR family transcriptional regulator n=1 Tax=Achromobacter aloeverae TaxID=1750518 RepID=A0A4Q1HJH5_9BURK) HSP 1 Score: 172 bits (435), Expect = 3.460e-50 Identity = 81/149 (54.36%), Postives = 110/149 (73.83%), Query Frame = 1
Query: 1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTRALCGD 444
F +QRY++FCG +H LF + I +E L E+FVSF+SD +G SLSPLTIFRDQ F+G+VVA S +DE+ RLLVAG+GIGCLP+HS ++ +GRL RLPP +GVC V+L++LW ++A PA+ AF++ F Y+DGY+ R GD
Sbjct: 172 FLQQRYALFCGRNHALFGKPDIHIEDLLGENFVSFASDALGDSLSPLTIFRDQRGFSGRVVATSTQHDEVKRLLVAGFGIGCLPEHSVQADLAEGRLWRLPPGEGVCLVDLHLLWHRDAQRTPAEDAFLKHFRGYIDGYSMAERLAQGD 320
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A9IN41_BORPD (Transcriptional regulator, LysR-family n=3 Tax=Bordetella petrii TaxID=94624 RepID=A9IN41_BORPD) HSP 1 Score: 171 bits (432), Expect = 1.790e-49 Identity = 75/147 (51.02%), Postives = 110/147 (74.83%), Query Frame = 1
Query: 1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTRALC 438
F +QRY++FCG +H LF + + ++ L E+FVSF+SD +G SLSPLTIFRDQ F+G++VA S +DE+ RLL+AG+GIGCLP+HS ++E+GRL RLPP +GVC V+L++LW ++A A+ AF++ F Y+DG++ R +C
Sbjct: 198 FLQQRYALFCGRNHALFGKQDVRIDDLLGENFVSFASDALGDSLSPLTIFRDQRGFSGRIVASSTQHDEVKRLLIAGFGIGCLPEHSVQADIEQGRLWRLPPGEGVCTVDLHLLWHRDAQPTQAEMAFLKHFRDYIDGHSMAERLVC 344
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A6S7A583_9BURK (HTH-type transcriptional regulator ArgP n=2 Tax=Achromobacter TaxID=222 RepID=A0A6S7A583_9BURK) HSP 1 Score: 167 bits (424), Expect = 1.470e-48 Identity = 77/144 (53.47%), Postives = 107/144 (74.31%), Query Frame = 1
Query: 1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTR 429
F +QRY++FCG +H LF R I +E L E+FVSF+SD +G SLSPLTIFRDQ F+G++VA S +DE+ RLL+AG+GIGCLP+HS ++ +GRL RLPP +GVC V+L++LW ++A PA+ AF++ F Y+D Y+ R
Sbjct: 174 FLQQRYALFCGRNHALFGRQDIRIEDLLGENFVSFASDALGDSLSPLTIFRDQRGFSGRIVASSTHHDEVKRLLIAGFGIGCLPEHSVQADLAQGRLWRLPPGEGVCSVDLHLLWHRDAQHTPAEVAFLKHFRDYIDRYSMAER 317
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A0D6I085_ALCXX (CysJI operon transcriptional activator n=34 Tax=Proteobacteria TaxID=1224 RepID=A0A0D6I085_ALCXX) HSP 1 Score: 166 bits (421), Expect = 4.590e-48 Identity = 77/144 (53.47%), Postives = 105/144 (72.92%), Query Frame = 1
Query: 1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTR 429
F QRY++FCG +H LF R + +E L E+FVSF+SD +G SLSPLTIFRDQ F+G+VVA S +DE+ RLL+AG+GIGCLP+HS ++ +GRL RLPP +GVC V+L++LW ++A PA+ AF+ F Y+DG+ R
Sbjct: 173 FLHQRYALFCGRNHALFGRQDLRIEDLMGENFVSFASDALGDSLSPLTIFRDQRGFSGRVVATSTQHDEVKRLLIAGFGIGCLPEHSVRRDLAEGRLWRLPPGEGVCSVDLHLLWHRDAPRSPAEKAFLTHFRDYIDGFTMAER 316
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: UPI00136E6FD8 (LysR family transcriptional regulator n=1 Tax=Achromobacter aestuarii TaxID=2511204 RepID=UPI00136E6FD8) HSP 1 Score: 166 bits (419), Expect = 8.930e-48 Identity = 77/148 (52.03%), Postives = 108/148 (72.97%), Query Frame = 1
Query: 1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTRALCG 441
F QRY++FCG +H LF R + +E L +E+FVSF+SD +G SLSPLTIFRDQ F+G+V+A S +DE+ RLL+AG GIGCLP+HS ++E+GRL RLPP +GVC V+L++LW +NA A+ AF++ F +DG++ + R G
Sbjct: 174 FLHQRYALFCGRNHALFGRPDLRIEDLMSENFVSFASDTLGDSLSPLTIFRDQRGFSGRVIATSNQHDEVKRLLIAGLGIGCLPEHSVQRDLEEGRLWRLPPGEGVCSVDLHLLWHRNAQRSSAELAFLKCFRDCIDGFSMEERLAAG 321
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Match: A0A3S4NTG7_9BURK (HTH-type transcriptional regulator AbgR n=17 Tax=Achromobacter TaxID=222 RepID=A0A3S4NTG7_9BURK) HSP 1 Score: 164 bits (414), Expect = 3.800e-47 Identity = 75/147 (51.02%), Postives = 106/147 (72.11%), Query Frame = 1
Query: 1 FFRQRYSMFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTGKVVAMSPSYDEIIRLLVAGYGIGCLPQHSANIEVEKGRLRRLPPEDGVCDVELYILWKKNALTLPAQ-AFVEEFIHYMDGYNEDTRALC 438
F +QRY++FCG++HPLF R I +E L +E+FVSF+SD +G SLSPLTIFRDQ F+G ++A S +DE+ RLLVAG+GIGCLP+HS ++ +GRL RLPP +GVC +L++LW ++A PA+ F+ ++D Y+ R L
Sbjct: 164 FLQQRYALFCGKNHPLFGRADIRMEDLLHENFVSFASDALGDSLSPLTIFRDQRGFSGSIIATSSQHDEVKRLLVAGFGIGCLPEHSVEADLAEGRLWRLPPGEGVCAADLHLLWHRDAHRSPAEDLFITALRDHIDSYSLPQRLLA 310 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig16023.3468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig16023.3468.1 >prot_E-siliculosus-1a_F_contig16023.3468.1 ID=prot_E-siliculosus-1a_F_contig16023.3468.1|Name=mRNA_E-siliculosus-1a_F_contig16023.3468.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=142bp MFCGEHHPLFERDTITLETLANEDFVSFSSDVIGGSLSPLTIFRDQHAFTback to top mRNA from alignment at E-siliculosus-1a_F_contig16023:448..894- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig16023.3468.1 ID=mRNA_E-siliculosus-1a_F_contig16023.3468.1|Name=mRNA_E-siliculosus-1a_F_contig16023.3468.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=447bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16023:448..894- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig16023:448..894- >mRNA_E-siliculosus-1a_F_contig16023.3468.1 ID=mRNA_E-siliculosus-1a_F_contig16023.3468.1|Name=mRNA_E-siliculosus-1a_F_contig16023.3468.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig16023:448..894- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |