prot_E-siliculosus-1a_F_contig1593.3410.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1593.3410.1
Unique Nameprot_E-siliculosus-1a_F_contig1593.3410.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length310
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1593.3410.1 vs. uniprot
Match: A0A6H5KTG8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTG8_9PHAE)

HSP 1 Score: 468 bits (1204), Expect = 6.860e-162
Identity = 235/253 (92.89%), Postives = 242/253 (95.65%), Query Frame = 0 
Query:    1 MIVRPRQSSLTPVAAALATTALLLSTSSPVVSGAPVVVTDYKQLVGTIGSNNDYDTGERFARDGMVLVHKGDESCAPDFDALGLSVFGTHPDMYSLVSVDADHADKELLDKLGVDPAILSEPRKCPSLSVVPRRSTVEAPAVKLPTLDKRGSYHLSTVKTQQVSVGIVNEMGFDLDIHYQWWDEPVKPTHIRTLAPGTENWMLSYKTTLVLALNKETQEEVSRFLVKGHGLFTVAERSCTAETCGTSEGAETP 253
            M VRPRQSSL PVA ALA+ ALLLSTSSPVVSGAPVVVTDYKQLVGTIGSNNDYDTGERFAR+GMVLVHKGDESCAPDFD LGLSVFG HPDMYSLVSVDADHADKELLDKLGVDPA LSEP+KCPSLS+VPRRSTVEAPAV LPTLDKRGSYHL+ VKTQQVSVGIVNEM FDLDIHYQWW+EPVKPTHIRTLAPGTENWMLSYKTTLVLALNKETQEEVSR+LVKGHGLFTVAERSCTAETCGTSEG ETP
Sbjct:    1 MSVRPRQSSLNPVAVALASAALLLSTSSPVVSGAPVVVTDYKQLVGTIGSNNDYDTGERFAREGMVLVHKGDESCAPDFDTLGLSVFGDHPDMYSLVSVDADHADKELLDKLGVDPATLSEPKKCPSLSIVPRRSTVEAPAVILPTLDKRGSYHLNAVKTQQVSVGIVNEMDFDLDIHYQWWNEPVKPTHIRTLAPGTENWMLSYKTTLVLALNKETQEEVSRYLVKGHGLFTVAERSCTAETCGTSEGTETP 253
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1593.3410.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTG8_9PHAE6.860e-16292.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..310
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..33
score: 0.689

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1593contigE-siliculosus-1a_F_contig1593:25256..30308 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1593.3410.1mRNA_E-siliculosus-1a_F_contig1593.3410.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1593 25256..30308 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1593.3410.1 ID=prot_E-siliculosus-1a_F_contig1593.3410.1|Name=mRNA_E-siliculosus-1a_F_contig1593.3410.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=310bp
MIVRPRQSSLTPVAAALATTALLLSTSSPVVSGAPVVVTDYKQLVGTIGS
NNDYDTGERFARDGMVLVHKGDESCAPDFDALGLSVFGTHPDMYSLVSVD
ADHADKELLDKLGVDPAILSEPRKCPSLSVVPRRSTVEAPAVKLPTLDKR
GSYHLSTVKTQQVSVGIVNEMGFDLDIHYQWWDEPVKPTHIRTLAPGTEN
WMLSYKTTLVLALNKETQEEVSRFLVKGHGLFTVAERSCTAETCGTSEGA
ETPVRLREPPGNRWTRGAWLTTGSSRRGFRGSPRLGSRRSLCRMTSGISS
RPTTRRTSER
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