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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1593.3410.1 vs. uniprot
Match: A0A6H5KTG8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTG8_9PHAE) HSP 1 Score: 468 bits (1204), Expect = 6.860e-162 Identity = 235/253 (92.89%), Postives = 242/253 (95.65%), Query Frame = 1
Query: 1 MIVRPRQSSLTPVAAALATTALLLSTSSPVVSGAPVVVTDYKQLVGTIGSNNDYDTGERFARDGMVLVHKGDESCAPDFDALGLSVFGTHPDMYSLVSVDADHADKELLDKLGVDPAILSEPRKCPSLSVVPRRSTVEAPAVKLPTLDKRGSYHLSTVKTQQVSVGIVNEMGFDLDIHYQWWDEPVKPTHIRTLAPGTENWMLSYKTTLVLALNKETQEEVSRFLVKGHGLFTVAERSCTAETCGTSEGAETP 759
M VRPRQSSL PVA ALA+ ALLLSTSSPVVSGAPVVVTDYKQLVGTIGSNNDYDTGERFAR+GMVLVHKGDESCAPDFD LGLSVFG HPDMYSLVSVDADHADKELLDKLGVDPA LSEP+KCPSLS+VPRRSTVEAPAV LPTLDKRGSYHL+ VKTQQVSVGIVNEM FDLDIHYQWW+EPVKPTHIRTLAPGTENWMLSYKTTLVLALNKETQEEVSR+LVKGHGLFTVAERSCTAETCGTSEG ETP
Sbjct: 1 MSVRPRQSSLNPVAVALASAALLLSTSSPVVSGAPVVVTDYKQLVGTIGSNNDYDTGERFAREGMVLVHKGDESCAPDFDTLGLSVFGDHPDMYSLVSVDADHADKELLDKLGVDPATLSEPKKCPSLSIVPRRSTVEAPAVILPTLDKRGSYHLNAVKTQQVSVGIVNEMDFDLDIHYQWWNEPVKPTHIRTLAPGTENWMLSYKTTLVLALNKETQEEVSRYLVKGHGLFTVAERSCTAETCGTSEGTETP 253
BLAST of mRNA_E-siliculosus-1a_F_contig1593.3410.1 vs. uniprot
Match: A0A835YWU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWU1_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 8.340e-11 Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 3
Query: 777 ARKQMDQGRLVNNRKQPEGLPRFTEVGFKKITVPDDVWDLIKTYYEENK 923
AR+Q ++ R+ NN +QP GLPRFT+VGFKKI VPDDVWD++ TYY +NK
Sbjct: 259 AREQNEKFRVRNNVQQPVGLPRFTDVGFKKIRVPDDVWDMLVTYYRQNK 307
BLAST of mRNA_E-siliculosus-1a_F_contig1593.3410.1 vs. uniprot
Match: A0A7S2THP0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2THP0_9EUKA) HSP 1 Score: 58.2 bits (139), Expect = 6.250e-6 Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 3
Query: 789 MDQGRLVNNRKQPEGLPRFTEVGFKKITVPDDVWDLIKTYYEENK 923
++ R NR QP+ L FTE+GF+K +PDDVW+L+++YYE NK
Sbjct: 133 QNEDRRQTNRIQPQNLKNFTELGFEKRKIPDDVWELLRSYYENNK 177
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Start | 1 |
| Stop | 0 |
| Cds size | 930 |
| Model size | 930 |
| Exons | 6 |
| Hectar predicted targeting category | signal peptide |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| Ec32 ortholog | Ec-06_004670.1 |
| Ec32 ortholog description | conserved unknown protein |
| EggNOG OGs | 2DE90@1,2S5PQ@2759 |
| Seed eggNOG ortholog | 2880.D8LR21 |
| Seed ortholog evalue | 6.6e-133 |
| Seed ortholog score | 480.3 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1593.3410.1 >prot_E-siliculosus-1a_F_contig1593.3410.1 ID=prot_E-siliculosus-1a_F_contig1593.3410.1|Name=mRNA_E-siliculosus-1a_F_contig1593.3410.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=310bp
MIVRPRQSSLTPVAAALATTALLLSTSSPVVSGAPVVVTDYKQLVGTIGS NNDYDTGERFARDGMVLVHKGDESCAPDFDALGLSVFGTHPDMYSLVSVD ADHADKELLDKLGVDPAILSEPRKCPSLSVVPRRSTVEAPAVKLPTLDKR GSYHLSTVKTQQVSVGIVNEMGFDLDIHYQWWDEPVKPTHIRTLAPGTEN WMLSYKTTLVLALNKETQEEVSRFLVKGHGLFTVAERSCTAETCGTSEGA ETPVRLREPPGNRWTRGAWLTTGSSRRGFRGSPRLGSRRSLCRMTSGISS RPTTRRTSER back to topmRNA from alignment at E-siliculosus-1a_F_contig1593:25256..30308+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1593.3410.1 ID=mRNA_E-siliculosus-1a_F_contig1593.3410.1|Name=mRNA_E-siliculosus-1a_F_contig1593.3410.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5053bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1593:25256..30308+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) ATGATCGTCCGACCGCGACAGAGCTCCCTTACCCCCGTGGCGGCGGCGCT
GGCCACGACGGCCTTGCTGCTGAGCACGTCGTCCCCCGTTGTCTCCGGCG
CCCCCGTGGTTGTCACCGACTACAAGCAGCTTGTTGGAACGATCGGTTCA
AACAACGACTACGACACGGGCGAGCGCTTCGCCAGGTAGGCTGACAGCAG
CAGTATGCACGAAGAACTGCCCTTCGTTAGGTAGCCCCCTCCCTTGGATG
GTGGTGGGTGAGAGCGTGGGGCTGGGTGGGCGTCTGCTACGCTGCGTTTG
TATTTTCCGTCCACAAGCAGCAATGTATTCGCTTCCCACATTACTCCGCT
TTCCATCGCTCCTTCAAGTTTCTTTCCCAACCGCAATTTATCGTCTCTCA
CATCTCTTACATTGTCCGATATCCCTCCTCTCTCTGTCCGTTGTGGCCGG
GCGGGAGCAGGGAGGGGCGGGGGGGAGACATAGGGTAGACGCCCAGGATT
TCCTCGCGTTTGGAGTCTCCTTGGGCGTGAAGTTGCCAGACGCGCGCAAC
CGCTTTTTATTTGTGTGGCTTGCGGGCGGTTCGGCGCTAGCCAGTTTTTG
CCAGCGCACGCTCGGAACGACTCTTTTAGGAACGATTTTGGTTTTGTTCC
CGAACATGTGTAGTCTCTGTATGCATTGTACAGGTCAGGAGAGAGATGAG
AACGCAGCTACCTTGTATTCATACGACCAGAAAAAACAGGAGTCCGCCTT
AGTTTTCGGGGGCTTGTGCGGGCACAGACTCGCCATCGTGTTAGAGCTCT
GCGTTCGGCGCCGCAGAACAAAACAATATGAAGGATTCTTCGGTCCTTCC
CCTGATTTTTGGACCTGGTTGGCCTGCATTCTGTCAAGAGTGTGAGGGAG
ATTCAAACGATGTGGCTGCGGTATCTAATACCAGCGGGCGTTAGTGTAGT
GCTCGTGATGCCGTGGAACCGCCGGACAGTTACCCAGCGGAGGTTCGCGC
ATACCCGTGGCAAATTGAATCCCCGTCTCTTCCGTTTGTGGGAGGGCGAT
CGGATTGTTACAGCTGGATGGGTTCAGAGAAGATTGGGCATGAAGTACCG
ACTAGTCTAGACCTTTGTGTCCGTGGTCGTTGGAATGAAGTGTACGTGAC
GTACCTTCTTTTGGTCTTTTGGTGCAGTAGGTCGTCACGGATCTTTCGGT
GTATAGGGCTAGTAGACAGGCTCAAAACCCGGTGTCCAGCTGATTTTTCC
CCCAACACTCACTACTTGTACTGCTGCAAAGACTCCAGCACATACCTATG
CATGTATGATGCATATCCCCTTCCCGTTGAGTGTAGTGTTGTTCCAACTT
TCGGTGGTTCAAAAGTTCAATAGTGGATACAGGATACAGGTCTGGGGCAT
TGGAGCGATTGATACACGTGTCAACCACCGCAAGGGTCCGCGCCAATCAA
ATGGCCGCATTCCGACGCAACCACTTGCAGTACGGCCCGCGGGCCGCCGG
CTCGCGTTACGGGTTGCCTCCTCAAGAAATGACTCGCCTGGCGAAAAATG
AACAGTTCGGAAATCAGCGCGGAACCTAACCACTGCTGCTGTTTTGTTCT
TTTCGTCCCATCTACAACTGCTGTAGTCCGGGCGCGCCAGTCTGAACCTA
TCTGTTGGATGTATGTTTTGACGCGGCAGTTGAGGTTACGCGGAGGTAAT
TCTGTTCTTTTGTTTTACCGCATATGACACAAGATAACACACCCCCTGGC
CCGATTTTCAAAGCTCGATTACTCGACGACGAAGAGGATACATAACGAAA
TGATGCATTTTCAAAAAGCTCTCAACGAGACGGTTCCAACGCCGCCGTTT
TCGGCGCTGTGAGTCTTCCTGCTGTTGAGAAATCGAGCTTTGAAAATTGG
TCAAGGGGGTGTGTTATCTTGTGTCAATACGGTATTGTCATCATTTTTTC
TCCCCCTGCGGTGCTCGGCGTCAATTTTATCCCGACCACGAGGCTTGACA
GTATAGCAGTACAGCAGTAGAGGTCCGTTTTTAGTGCCTGTTGAATAGTG
CGGGTTACCGGTACAGTGCCGGTGCTATCGGCTCGCACACACTGGAATAC
CGAGTCGTTGTTATGTACCCTGAATAGTGCCGGTGTCCGGTTTAGTGCCG
TTGAAATTTCGGCGCACACCCCGGCACTAAACAGGGACCTCTACTGCTGT
ACAAGTCAGTTCCTTCCTCTTTTTTTCTCACGACTATGCAACGCGCTTGC
CCTGCCACCTCTTGATTTTCGATGTTTGAACTCCACTCTTAACAAATAAC
AGCAAAGAGCGTTTCGCACTCCCGGTCCGCGACCCCCCCTTTTTATTTGT
GCAAACCCCGAAGCGCAACCAAACCGCCCGGCCTGTACTAAAAATTGATC
ACACAGGTAGCTCCAACCCATCCCCTTCGACTACTGTCGTCGTTGTATCT
CGAACGGGCAGTCTCTCTTTGATTGTATTTATGCAGATATTTTCTACTCT
ATTTAGTAAACAACTATTGTGCTGTGTTTCTTGTTTGTTCATGTACAAAC
GCGGCCTTGCCATTAGTACAAGATGTGGCCGTGCGCCTGAAAAATAACCC
CATTACATGTATCATATCACGCAGGGACGGGATGGTGCTTGTGCACAAGG
GAGATGAGAGCTGCGCCCCGGACTTCGACGCCCTCGGGCTGTCGGTCTTC
GGCACGCACCCAGACATGTACTCGCTCGTGTCTGTGGATGCCGACCACGC
GGACAAGGTAGATACGTACCGTATACCGTATGCATACTGCATACCGTATG
AGAAAGGGGTCGATTGGTTTTTGTACAGAGAGAGAGAGGCCGACATGGTG
AGGGGGGAGAGGCTGATGAAGGGGGCAGGGACGATGGAGAGGCTGACAAA
GTTGTATACAGTAGAGAGAGGGGGAGACGGAAGGGACGACTTCGTTGCCG
GAGATTTTTTTTTTTTTCATCACTATTGTAGAGAATCAGCGCTCACGCAG
TACCACCGCTCCTCTTGCCGTGTTGGTACGACCTCCAATTCGTGGTCACA
CAGGATAGAGATTGGTGCAATATGCACAAGCGTGCAATCGAACGACGCGG
CTTTGCTGCCTTTTACAGCTCTTTGTGCTGAACCCCGACGTGTTGTTTGT
GTTGTTGTCGTTGGTGGCAGGAGCTGCTGGACAAGCTGGGCGTCGATCCT
GCCATCCTCTCCGAACCGAGGAAATGTCCCTCGCTGAGTGTCGTGCCGAG
GCGCTCCACCGTAGAAGCTCCGGCGGTCAAATTGCCCACACTCGACAAGA
GGTGACCTGACTGCTGTTTTCCTGTACTCGGGTTACTCGCTGTTCCCCTT
CTGTCAAGGAGTAACGTCGTCTCGTCTCTCCCTTGGTGTTTCTTTTTTTT
TGTCCTTTGATTGGCTTGGAATTTATTTTTTTATTTATTATTTTATTTTC
GGGGCCACTTCCTGGTTTGATTGTTGTTTGACCTCTTGTGTCTTGCTGAA
TCTCCCTCTTTCTTCTCTCTTTCTTTCTCCATTTCTCTCTTCTCTGTGTC
GCTGTCTCTCTCATATCTTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTTT
TTGTTTGGCTCTCTCGTATCCAACAAAAGGGGAAGCTACCATCTCAGCAC
CGTCAAGACCCAGCAGGTTTCCGTGGGCATCGTGAACGAGATGGGCTTCG
ACCTGGACATCCACTACCAGTGGTGGGACGAACCGGTCAAGCCCACGCAC
ATCAGGACGTGAGAAGAGAAGAAAGACATGCTTATTGTCAATACCATGCT
ATTTCAAGGATAAGAAGAATATACACTTTCAGCAAGAGCAGTGGCGGAAG
GAATGGAAATCAGTCTTGTGCCGTCGATTGTTGGACTGTTGTGCTCCGAG
ATGCGCCCATGTCGTTCTTGTAAGGAAATTAGAGGTGCTCCTACAACTAG
TGCTGCTGTAGAGACAACAAGATGCTACCGCTGTGACGAACACGTACACA
CCGCAAACCTCTCGCTACATGGCAGACCAGCCTAAGGCACATACTTTGCT
CAAACCACAAATTCCACCACCACCATCGCCAGGCTTGCACCAGGGACGGA
GAACTGGATGCTGAGCTACAAGACCACCCTCGTGTTGGCCCTCAACAAGG
AGACCCAGGAGGAGGTGTCGAGGTTCCTCGTGAAGGGCCACGGGCTCTTC
ACCGTGGCGGAGAGGTCGTGCACCGCCGAGACCTGCGGCACTTCGGAGGG
GGCGGAGACGCCGGTAAGAGTCCGGGGGGGGGGGGGGGGGTACTCATGTA
AACCCATGCCGTAGTCGTTAGACCATTGACCTCGCATCCCTACGATGCCA
GGGCGGAGCGATGTGCCTGGTTTTCGCCGGCCCAGGCTACGTTTCACGAG
GGTGAACCAGAAACTGGTCGTCATCCTTGCTGTTGCTGTGCCAAAGTCGA
GGGTGCGGGGGAAGGCAGAACAGAATGTTTTTTGGGTTGGGTGTGACGGG
TGTGACGTCACGCGCGCTCTTGTGTGTGTGTGTGTGTGTGTGTGTTGCTT
GGACGTGTGTCCACGGCGCTATAGCCGATTCGGGCGTGGAGGGAAGTCAG
TTTTAGCAGGACGACCACAGCACGAGCTTTCTCTAGATTGCCAGCACAAG
GCCTCGAAACTGGCTTGCTCATGAAAGACTTTGGTGTCCCGATCGTGCAA
GTGTTGTCATCTTGCTTGTCTCTTTTCCGTGCGGTTCCGAAGTTTCTGTG
ATTTACTTTTTTTCTTGCAGCATTCTCGTATCTCCCCCCTTCGTGTCCCT
TTCCCTGCCGGGCTCCATTGTACATTTTCCCCTTGCGGCACGCCTCATTC
GTTTGTTCTTTCATCTCACGGAACGCAGCAAGACATAGCTTCGCGAACCG
CCAGGAAACAGATGGACCAGGGGCGCCTGGTTAACAACAGGAAGCAGCCG
GAGGGGCTTCCGCGGTTCACCGAGGTTGGGTTCAAGAAGATCACTGTGCC
GGATGACGTCTGGGATCTCATCAAGACCTACTACGAGGAGAACAAGTGAG
CGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1593:25256..30308+ >mRNA_E-siliculosus-1a_F_contig1593.3410.1 ID=mRNA_E-siliculosus-1a_F_contig1593.3410.1|Name=mRNA_E-siliculosus-1a_F_contig1593.3410.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1860bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1593:25256..30308+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) ATGATCGTCCGACCGCGACAGAGCTCCCTTACCCCCGTGGCGGCGGCGCT GGCCACGACGGCCTTGCTGCTGAGCACGTCGTCCCCCGTTGTCTCCGGCG CCCCCGTGGTTGTCACCGACTACAAGCAGCTTGTTGGAACGATCGGTTCA AACAACGACTACGACACGGGCGAGCGCTTCGCCAGATGATCGTCCGACCG CGACAGAGCTCCCTTACCCCCGTGGCGGCGGCGCTGGCCACGACGGCCTT GCTGCTGAGCACGTCGTCCCCCGTTGTCTCCGGCGCCCCCGTGGTTGTCA CCGACTACAAGCAGCTTGTTGGAACGATCGGTTCAAACAACGACTACGAC ACGGGCGAGCGCTTCGCCAGGGACGGGATGGTGCTTGTGCACAAGGGAGA TGAGAGCTGCGCCCCGGACTTCGACGCCCTCGGGCTGTCGGTCTTCGGCA CGCACCCAGACATGTACTCGCTCGTGTCTGTGGATGCCGACCACGCGGAC AAGGGACGGGATGGTGCTTGTGCACAAGGGAGATGAGAGCTGCGCCCCGG ACTTCGACGCCCTCGGGCTGTCGGTCTTCGGCACGCACCCAGACATGTAC TCGCTCGTGTCTGTGGATGCCGACCACGCGGACAAGGAGCTGCTGGACAA GCTGGGCGTCGATCCTGCCATCCTCTCCGAACCGAGGAAATGTCCCTCGC TGAGTGTCGTGCCGAGGCGCTCCACCGTAGAAGCTCCGGCGGTCAAATTG CCCACACTCGACAAGAGGAGCTGCTGGACAAGCTGGGCGTCGATCCTGCC ATCCTCTCCGAACCGAGGAAATGTCCCTCGCTGAGTGTCGTGCCGAGGCG CTCCACCGTAGAAGCTCCGGCGGTCAAATTGCCCACACTCGACAAGAGGG GAAGCTACCATCTCAGCACCGTCAAGACCCAGCAGGTTTCCGTGGGCATC GTGAACGAGATGGGCTTCGACCTGGACATCCACTACCAGTGGTGGGACGA ACCGGTCAAGCCCACGCACATCAGGACGGGAAGCTACCATCTCAGCACCG TCAAGACCCAGCAGGTTTCCGTGGGCATCGTGAACGAGATGGGCTTCGAC CTGGACATCCACTACCAGTGGTGGGACGAACCGGTCAAGCCCACGCACAT CAGGACGCTTGCACCAGGGACGGAGAACTGGATGCTGAGCTACAAGACCA CCCTCGTGTTGGCCCTCAACAAGGAGACCCAGGAGGAGGTGTCGAGGTTC CTCGTGAAGGGCCACGGGCTCTTCACCGTGGCGGAGAGGTCGTGCACCGC CGAGACCTGCGGCACTTCGGAGGGGGCGGAGACGCCGGTAAGAGCTTGCA CCAGGGACGGAGAACTGGATGCTGAGCTACAAGACCACCCTCGTGTTGGC CCTCAACAAGGAGACCCAGGAGGAGGTGTCGAGGTTCCTCGTGAAGGGCC ACGGGCTCTTCACCGTGGCGGAGAGGTCGTGCACCGCCGAGACCTGCGGC ACTTCGGAGGGGGCGGAGACGCCGGTAAGACTTCGCGAACCGCCAGGAAA CAGATGGACCAGGGGCGCCTGGTTAACAACAGGAAGCAGCCGGAGGGGCT TCCGCGGTTCACCGAGGTTGGGTTCAAGAAGATCACTGTGCCGGATGACG TCTGGGATCTCATCAAGACCTACTACGAGGAGAACAAGTGAGCGGCTTCG CGAACCGCCAGGAAACAGATGGACCAGGGGCGCCTGGTTAACAACAGGAA GCAGCCGGAGGGGCTTCCGCGGTTCACCGAGGTTGGGTTCAAGAAGATCA CTGTGCCGGATGACGTCTGGGATCTCATCAAGACCTACTACGAGGAGAAC AAGTGAGCGG back to top
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