prot_E-siliculosus-1a_F_contig1568.3281.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1568.3281.1
Unique Nameprot_E-siliculosus-1a_F_contig1568.3281.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length256
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1568.3281.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 414 bits (1065), Expect = 9.580e-130
Identity = 240/256 (93.75%), Postives = 243/256 (94.92%), Query Frame = 0 
Query:    1 LEAAATAGGTAVATFQRPLLAGLACLGAHEDLGQRALLLSTLVACPSLLGPYLRTFNTAMLEARPTYRLLQTYSLLSAVLRKVPVAGSXXXXXXXXXXXXXXXXXXGQVLFSTVMPAELNKKELTRGVLSGSPLLQAATMNLMASVLDRASLVVTAAAGSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGDASKAPGGQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLPRPAGRPETQPAS 256
            LEAAA AGGTAV TFQRPLLAGLACLGAHEDLGQR LLL TLVACPSLLGPYLRTFNTAMLEARPTYRLLQTYSLLS VLRKVPVAGSXXXXXXXXXXXXXXX   GQ LFSTVMPAELNKKELTRGVLSGSPLLQAATMNLMA +LDR+SLV  AAAGSSPSPPGVV+MKRLLRQRMPDLQTLLGLRDKIGVGAGDASKAPGGQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLPRPA RPETQPAS
Sbjct:  489 LEAAAAAGGTAVVTFQRPLLAGLACLGAHEDLGQRTLLLPTLVACPSLLGPYLRTFNTAMLEARPTYRLLQTYSLLSTVLRKVPVAGSXXXXXXXXXXXXXXXA--GQALFSTVMPAELNKKELTRGVLSGSPLLQAATMNLMAGILDRSSLVAAAAAGSSPSPPGVVDMKRLLRQRMPDLQTLLGLRDKIGVGAGDASKAPGGQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLPRPAPRPETQPAS 742
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BLAST of mRNA_E-siliculosus-1a_F_contig1568.3281.1 vs. uniprot
Match: A0A6H5K182_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 405 bits (1042), Expect = 1.480e-126
Identity = 236/271 (87.08%), Postives = 239/271 (88.19%), Query Frame = 0 
Query:    1 LEAAATAGGTAVATFQRPLLAGLACLGAHEDLGQRALLL---------------STLVACPSLLGPYLRTFNTAMLEARPTYRLLQTYSLLSAVLRKVPVAGSXXXXXXXXXXXXXXXXXXGQVLFSTVMPAELNKKELTRGVLSGSPLLQAATMNLMASVLDRASLVVTAAAGSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGDASKAPGGQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLPRPAGRPETQPAS 256
            LEAAATAGGTAV TFQRPLLAGLACLGAHEDLGQRALLL               STLVACPSLLGPYLRTFNTA+LEARPTYRLLQTYSLLSAVLRKVPVAGS      XXXXXXXXX   GQ LFSTVMPAELNKKELTRGVLSGS LLQAATMNLMAS+LDRASLVV AAAGSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGD SK  GGQHVDRAVVLRWRVLSLLDRYAR+IPSSVAAARFDFLKLLPRPA RPETQPAS
Sbjct:  457 LEAAATAGGTAVVTFQRPLLAGLACLGAHEDLGQRALLLVGRCLLLEASSKWYRSTLVACPSLLGPYLRTFNTAILEARPTYRLLQTYSLLSAVLRKVPVAGSSPLSEEXXXXXXXXXA--GQALFSTVMPAELNKKELTRGVLSGSTLLQAATMNLMASILDRASLVVAAAAGSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGDGSKVTGGQHVDRAVVLRWRVLSLLDRYARLIPSSVAAARFDFLKLLPRPASRPETQPAS 725
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1568.3281.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8A9_ECTSI9.580e-13093.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K182_9PHAE1.480e-12687.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039844Nucleolar pre-ribosomal-associated protein 1PANTHERPTHR13500NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1coord: 19..246

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1568contigE-siliculosus-1a_F_contig1568:2241..3590 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1568.3281.1mRNA_E-siliculosus-1a_F_contig1568.3281.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1568 2241..3590 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1568.3281.1 ID=prot_E-siliculosus-1a_F_contig1568.3281.1|Name=mRNA_E-siliculosus-1a_F_contig1568.3281.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=256bp
LEAAATAGGTAVATFQRPLLAGLACLGAHEDLGQRALLLSTLVACPSLLG
PYLRTFNTAMLEARPTYRLLQTYSLLSAVLRKVPVAGSSSSSEEDGGGGG
GGAAAAGQVLFSTVMPAELNKKELTRGVLSGSPLLQAATMNLMASVLDRA
SLVVTAAAGSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGDASK
APGGQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLPRPAGRP
ETQPAS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039844URB1