mRNA_E-siliculosus-1a_F_contig1568.3281.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1568.3281.1
Unique NamemRNA_E-siliculosus-1a_F_contig1568.3281.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1568.3281.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 414 bits (1065), Expect = 9.580e-130
Identity = 240/256 (93.75%), Postives = 243/256 (94.92%), Query Frame = 1 
Query:    1 LEAAATAGGTAVATFQRPLLAGLACLGAHEDLGQRALLLSTLVACPSLLGPYLRTFNTAMLEARPTYRLLQTYSLLSAVLRKVPVAGSXXXXXXXXXXXXXXXXXXGQVLFSTVMPAELNKKELTRGVLSGSPLLQAATMNLMASVLDRASLVVTAAAGSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGDASKAPGGQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLPRPAGRPETQPAS 768
            LEAAA AGGTAV TFQRPLLAGLACLGAHEDLGQR LLL TLVACPSLLGPYLRTFNTAMLEARPTYRLLQTYSLLS VLRKVPVAGSXXXXXXXXXXXXXXX   GQ LFSTVMPAELNKKELTRGVLSGSPLLQAATMNLMA +LDR+SLV  AAAGSSPSPPGVV+MKRLLRQRMPDLQTLLGLRDKIGVGAGDASKAPGGQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLPRPA RPETQPAS
Sbjct:  489 LEAAAAAGGTAVVTFQRPLLAGLACLGAHEDLGQRTLLLPTLVACPSLLGPYLRTFNTAMLEARPTYRLLQTYSLLSTVLRKVPVAGSXXXXXXXXXXXXXXXA--GQALFSTVMPAELNKKELTRGVLSGSPLLQAATMNLMAGILDRSSLVAAAAAGSSPSPPGVVDMKRLLRQRMPDLQTLLGLRDKIGVGAGDASKAPGGQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLPRPAPRPETQPAS 742
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BLAST of mRNA_E-siliculosus-1a_F_contig1568.3281.1 vs. uniprot
Match: A0A6H5K182_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 405 bits (1042), Expect = 1.480e-126
Identity = 236/271 (87.08%), Postives = 239/271 (88.19%), Query Frame = 1 
Query:    1 LEAAATAGGTAVATFQRPLLAGLACLGAHEDLGQRALLL---------------STLVACPSLLGPYLRTFNTAMLEARPTYRLLQTYSLLSAVLRKVPVAGSXXXXXXXXXXXXXXXXXXGQVLFSTVMPAELNKKELTRGVLSGSPLLQAATMNLMASVLDRASLVVTAAAGSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGDASKAPGGQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLPRPAGRPETQPAS 768
            LEAAATAGGTAV TFQRPLLAGLACLGAHEDLGQRALLL               STLVACPSLLGPYLRTFNTA+LEARPTYRLLQTYSLLSAVLRKVPVAGS      XXXXXXXXX   GQ LFSTVMPAELNKKELTRGVLSGS LLQAATMNLMAS+LDRASLVV AAAGSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGD SK  GGQHVDRAVVLRWRVLSLLDRYAR+IPSSVAAARFDFLKLLPRPA RPETQPAS
Sbjct:  457 LEAAATAGGTAVVTFQRPLLAGLACLGAHEDLGQRALLLVGRCLLLEASSKWYRSTLVACPSLLGPYLRTFNTAILEARPTYRLLQTYSLLSAVLRKVPVAGSSPLSEEXXXXXXXXXA--GQALFSTVMPAELNKKELTRGVLSGSTLLQAATMNLMASILDRASLVVAAAAGSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGDGSKVTGGQHVDRAVVLRWRVLSLLDRYARLIPSSVAAARFDFLKLLPRPASRPETQPAS 725
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1568.3281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8A9_ECTSI9.580e-13093.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K182_9PHAE1.480e-12687.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1568contigE-siliculosus-1a_F_contig1568:2241..3590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size768
Model size769
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.5.1.54,3.6.1.52
EggNOG OGsKOG1791@1,KOG1791@2759
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GOsGO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0070013
KEGG ModuleM00022
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ReactionR01826
KEGG koko:K01626,ko:K07766,ko:K14861
KEGG rclassRC00435
Preferred nameURB1
Seed eggNOG ortholog2880.D7G8A9
Seed ortholog evalue1.7e-113
Seed ortholog score415.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928079.1989663-CDS-E-siliculosus-1a_F_contig1568:2240..28911622928079.1989663-CDS-E-siliculosus-1a_F_contig1568:2240..2891Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1568 2241..2891 -
1696318797.9990933-CDS-E-siliculosus-1a_F_contig1568:2240..28911696318797.9990933-CDS-E-siliculosus-1a_F_contig1568:2240..2891Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1568 2241..2891 -
1622928079.2127173-CDS-E-siliculosus-1a_F_contig1568:3473..35901622928079.2127173-CDS-E-siliculosus-1a_F_contig1568:3473..3590Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1568 3474..3590 -
1696318798.009064-CDS-E-siliculosus-1a_F_contig1568:3473..35901696318798.009064-CDS-E-siliculosus-1a_F_contig1568:3473..3590Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1568 3474..3590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1568.3281.1prot_E-siliculosus-1a_F_contig1568.3281.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1568 2241..3590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1568.3281.1

>prot_E-siliculosus-1a_F_contig1568.3281.1 ID=prot_E-siliculosus-1a_F_contig1568.3281.1|Name=mRNA_E-siliculosus-1a_F_contig1568.3281.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=256bp
LEAAATAGGTAVATFQRPLLAGLACLGAHEDLGQRALLLSTLVACPSLLG
PYLRTFNTAMLEARPTYRLLQTYSLLSAVLRKVPVAGSSSSSEEDGGGGG
GGAAAAGQVLFSTVMPAELNKKELTRGVLSGSPLLQAATMNLMASVLDRA
SLVVTAAAGSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGDASK
APGGQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLPRPAGRP
ETQPAS
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mRNA from alignment at E-siliculosus-1a_F_contig1568:2241..3590-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1568.3281.1 ID=mRNA_E-siliculosus-1a_F_contig1568.3281.1|Name=mRNA_E-siliculosus-1a_F_contig1568.3281.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1350bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1568:2241..3590- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCGAAGCCGCCGCCACGGCGGGAGGCACGGCGGTGGCCACCTTTCAGCG
CCCGCTGCTGGCCGGGCTGGCCTGTCTCGGCGCTCACGAGGACTTGGGGC
AGAGGGCGCTGTTGCTGGTGGGTCGTTGCTTGCTGCTCGAGTCGTCGTCG
TCGAAGTAGCACATGGTCTTTTGTTTTTGTGGACACCGTGCACGTCTTTT
CTACCCTCTCTGTGTGTGTGCGTGATCACGTCACCACGGGGTGATACCCA
GGGGGTGGTGAATGCGGGGTAAGTTGCGGGGGGGGGGGTGGTATCCAACG
AGAGGTCGGGTCGCTGTTGGCGCCTTTCGATCGACCGGGGGATGTACACG
AAGAGCATCTATCGGGTACCACATATGTGTGTGTGTGTGTGTGTGTGTGT
GTGTTTTTTTTTAAGGACTTCTCGGCTTCGTGGGGCTGCTAGCTCTCCTG
TGACGATCGCGTCCGTACGGAGTACCCACGGTTTGGTGCTGTTGTGAGTT
CCGCACATTTGCTGCCATGCTCCAATCCCTTCCTCCCCTCACTCCCTCTA
AACTTGTTCAATCTTTTTTCCCGCCGCTTCTTCTTCCTTGTGGTTTTCCC
CCTTGGTTCTGATTTTCTTTACGTGTTTTTTTTTTTGCTCGTCACGCACC
CCTACTGGCGAACCGACGAAAAAAAAATGCCTCGCGGCGACACGAGCAGT
CTACCCTCGTCGCCTGCCCGTCGCTCCTCGGGCCCTACCTCCGAACCTTC
AACACGGCCATGCTCGAGGCGCGTCCGACGTACCGCCTCCTCCAGACGTA
TTCCCTCCTCTCGGCAGTGCTGAGAAAGGTCCCGGTAGCTGGCTCCTCGT
CGTCGAGTGAAGAAGACGGCGGCGGCGGCGGCGGCGGCGCAGCCGCCGCG
GGGCAAGTGTTGTTCTCGACGGTAATGCCCGCGGAGCTCAACAAGAAGGA
GCTGACGAGGGGTGTCCTGAGCGGGAGCCCGCTGCTGCAGGCCGCTACCA
TGAACCTGATGGCTAGCGTCCTCGACCGCGCCAGCCTTGTCGTCACCGCC
GCCGCGGGTTCCTCCCCCTCGCCTCCTGGGGTTGTCGAGATGAAACGCCT
CCTGCGGCAGCGCATGCCCGATTTGCAAACGCTGCTGGGACTCCGGGACA
AGATCGGCGTTGGGGCCGGCGATGCTAGCAAGGCCCCGGGGGGGCAGCAC
GTCGATCGGGCAGTGGTCCTGAGGTGGCGCGTGCTGTCCCTGCTCGACCG
TTACGCCCGGGTGATCCCCTCGTCGGTGGCGGCCGCCCGGTTCGACTTCC
TCAAGCTCTTGCCACGACCGGCTGGACGGCCAGAGACGCAGCCTGCTTCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1568:2241..3590-

>mRNA_E-siliculosus-1a_F_contig1568.3281.1 ID=mRNA_E-siliculosus-1a_F_contig1568.3281.1|Name=mRNA_E-siliculosus-1a_F_contig1568.3281.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1536bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1568:2241..3590- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTCGAAGCCGCCGCCACGGCGGGAGGCACGGCGGTGGCCACCTTTCAGCG
CCCGCTGCTGGCCGGGCTGGCCTGTCTCGGCGCTCACGAGGACTTGGGGC
AGAGGGCGCTGTTGCTGCTCGAAGCCGCCGCCACGGCGGGAGGCACGGCG
GTGGCCACCTTTCAGCGCCCGCTGCTGGCCGGGCTGGCCTGTCTCGGCGC
TCACGAGGACTTGGGGCAGAGGGCGCTGTTGCTGTCTACCCTCGTCGCCT
GCCCGTCGCTCCTCGGGCCCTACCTCCGAACCTTCAACACGGCCATGCTC
GAGGCGCGTCCGACGTACCGCCTCCTCCAGACGTATTCCCTCCTCTCGGC
AGTGCTGAGAAAGGTCCCGGTAGCTGGCTCCTCGTCGTCGAGTGAAGAAG
ACGGCGGCGGCGGCGGCGGCGGCGCAGCCGCCGCGGGGCAAGTGTTGTTC
TCGACGGTAATGCCCGCGGAGCTCAACAAGAAGGAGCTGACGAGGGGTGT
CCTGAGCGGGAGCCCGCTGCTGCAGGCCGCTACCATGAACCTGATGGCTA
GCGTCCTCGACCGCGCCAGCCTTGTCGTCACCGCCGCCGCGGGTTCCTCC
CCCTCGCCTCCTGGGGTTGTCGAGATGAAACGCCTCCTGCGGCAGCGCAT
GCCCGATTTGCAAACGCTGCTGGGACTCCGGGACAAGATCGGCGTTGGGG
CCGGCGATGCTAGCAAGGCCCCGGGGGGGCAGCACGTCGATCGGGCAGTG
GTCCTGAGGTGGCGCGTGCTGTCCCTGCTCGACCGTTACGCCCGGGTGAT
CCCCTCGTCGGTGGCGGCCGCCCGGTTCGACTTCCTCAAGCTCTTGCCAC
GACCGGCTGGACGGCCAGAGACGCAGCCTGCTTCCTCTACCCTCGTCGCC
TGCCCGTCGCTCCTCGGGCCCTACCTCCGAACCTTCAACACGGCCATGCT
CGAGGCGCGTCCGACGTACCGCCTCCTCCAGACGTATTCCCTCCTCTCGG
CAGTGCTGAGAAAGGTCCCGGTAGCTGGCTCCTCGTCGTCGAGTGAAGAA
GACGGCGGCGGCGGCGGCGGCGGCGCAGCCGCCGCGGGGCAAGTGTTGTT
CTCGACGGTAATGCCCGCGGAGCTCAACAAGAAGGAGCTGACGAGGGGTG
TCCTGAGCGGGAGCCCGCTGCTGCAGGCCGCTACCATGAACCTGATGGCT
AGCGTCCTCGACCGCGCCAGCCTTGTCGTCACCGCCGCCGCGGGTTCCTC
CCCCTCGCCTCCTGGGGTTGTCGAGATGAAACGCCTCCTGCGGCAGCGCA
TGCCCGATTTGCAAACGCTGCTGGGACTCCGGGACAAGATCGGCGTTGGG
GCCGGCGATGCTAGCAAGGCCCCGGGGGGGCAGCACGTCGATCGGGCAGT
GGTCCTGAGGTGGCGCGTGCTGTCCCTGCTCGACCGTTACGCCCGGGTGA
TCCCCTCGTCGGTGGCGGCCGCCCGGTTCGACTTCCTCAAGCTCTTGCCA
CGACCGGCTGGACGGCCAGAGACGCAGCCTGCTTCC
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