prot_E-siliculosus-1a_F_contig1565.3264.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1565.3264.1
Unique Nameprot_E-siliculosus-1a_F_contig1565.3264.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length335
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3264.1 vs. uniprot
Match: D8LAT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT6_ECTSI)

HSP 1 Score: 554 bits (1427), Expect = 1.870e-195
Identity = 289/309 (93.53%), Postives = 300/309 (97.09%), Query Frame = 0 
Query:    1 MEEASVALSPSEKSKKSTDGRQDNTSDTADGKGHVLGRISYCCGIDCSDISGRSRRGLIISGACLTAGIVLELVATLWAFRQAVEAGGLDGQANCDEDGILFMQQLSVVTQEVCSQQIDSDLFLSETGFGGDYDPCESTNSGDTSSFLEVCSCSTDIVFDAPACSWVALQNSS-VVSNYAGCLARAVEVEFPHSFIPTIGRSECWPANPTGTAELTVTALVVALGSQLLEAMVGFLYLKDPSRGTVLLAAASAAAACGVVTVASVLLSLPGFYAYRKGYPTEVATFWLVWAAAGGAAVGALAELVATEF 308
            MEEASVALSPS+KS KSTDGRQDNTSDTA+GKGHVLGRIS C GID SDISGRSRRGLIISGACL AGIVLEL+ATLWAFRQAVEAGGLDGQANCDEDGILFMQQLSVVTQEVCSQ+IDSD+FLSETG GGDYDPCESTNSGDTSSFLEVCSCSTDIVFDAPACSWVALQNSS VVSNYAGCLARAVEVEFP+SFIPTIGRSECWPANPTGTAELTVTALVVALGSQL+E +VGF YLKDPSRGT+LLAAASAAAACGVVTVASVLLSLPGFYAYRKGYPTEVATFWLVWAAAGGAAVGALAEL+ATE+
Sbjct:   62 MEEASVALSPSKKSNKSTDGRQDNTSDTANGKGHVLGRISGCRGIDRSDISGRSRRGLIISGACLAAGIVLELIATLWAFRQAVEAGGLDGQANCDEDGILFMQQLSVVTQEVCSQRIDSDMFLSETGLGGDYDPCESTNSGDTSSFLEVCSCSTDIVFDAPACSWVALQNSSGVVSNYAGCLARAVEVEFPYSFIPTIGRSECWPANPTGTAELTVTALVVALGSQLIELVVGFRYLKDPSRGTLLLAAASAAAACGVVTVASVLLSLPGFYAYRKGYPTEVATFWLVWAAAGGAAVGALAELLATEY 370
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3264.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAT6_ECTSI1.870e-19593.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..80
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 214..237
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 311..334
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..57
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 244..266
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 238..243
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 286..310
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 267..285
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 81..213
NoneNo IPR availableTMHMMTMhelixcoord: 282..304
NoneNo IPR availableTMHMMTMhelixcoord: 214..236
NoneNo IPR availableTMHMMTMhelixcoord: 58..80
NoneNo IPR availableTMHMMTMhelixcoord: 245..267

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1565contigE-siliculosus-1a_F_contig1565:14305..15309 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1565.3264.1mRNA_E-siliculosus-1a_F_contig1565.3264.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1565 13534..15885 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1565.3264.1 ID=prot_E-siliculosus-1a_F_contig1565.3264.1|Name=mRNA_E-siliculosus-1a_F_contig1565.3264.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=335bp
MEEASVALSPSEKSKKSTDGRQDNTSDTADGKGHVLGRISYCCGIDCSDI
SGRSRRGLIISGACLTAGIVLELVATLWAFRQAVEAGGLDGQANCDEDGI
LFMQQLSVVTQEVCSQQIDSDLFLSETGFGGDYDPCESTNSGDTSSFLEV
CSCSTDIVFDAPACSWVALQNSSVVSNYAGCLARAVEVEFPHSFIPTIGR
SECWPANPTGTAELTVTALVVALGSQLLEAMVGFLYLKDPSRGTVLLAAA
SAAAACGVVTVASVLLSLPGFYAYRKGYPTEVATFWLVWAAAGGAAVGAL
AELVATEFSWRKVGCRTSARSAMGSSGWAQRQWR*
back to top