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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1565.3264.1 vs. uniprot
Match: D8LAT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT6_ECTSI) HSP 1 Score: 555 bits (1429), Expect = 1.250e-191 Identity = 289/309 (93.53%), Postives = 300/309 (97.09%), Query Frame = 3
Query: 186 MEEASVALSPSEKSKKSTDGRQDNTSDTADGKGHVLGRISYCCGIDCSDISGRSRRGLIISGACLTAGIVLELVATLWAFRQAVEAGGLDGQANCDEDGILFMQQLSVVTQEVCSQQIDSDLFLSETGFGGDYDPCESTNSGDTSSFLEVCSCSTDIVFDAPACSWVALQNSS-VVSNYAGCLARAVEVEFPHSFIPTIGRSECWPANPTGTAELTVTALVVALGSQLLEAMVGFLYLKDPSRGTVLLAAASAAAACGVVTVASVLLSLPGFYAYRKGYPTEVATFWLVWAAAGGAAVGALAELVATEF 1109
MEEASVALSPS+KS KSTDGRQDNTSDTA+GKGHVLGRIS C GID SDISGRSRRGLIISGACL AGIVLEL+ATLWAFRQAVEAGGLDGQANCDEDGILFMQQLSVVTQEVCSQ+IDSD+FLSETG GGDYDPCESTNSGDTSSFLEVCSCSTDIVFDAPACSWVALQNSS VVSNYAGCLARAVEVEFP+SFIPTIGRSECWPANPTGTAELTVTALVVALGSQL+E +VGF YLKDPSRGT+LLAAASAAAACGVVTVASVLLSLPGFYAYRKGYPTEVATFWLVWAAAGGAAVGALAEL+ATE+
Sbjct: 62 MEEASVALSPSKKSNKSTDGRQDNTSDTANGKGHVLGRISGCRGIDRSDISGRSRRGLIISGACLAAGIVLELIATLWAFRQAVEAGGLDGQANCDEDGILFMQQLSVVTQEVCSQRIDSDMFLSETGLGGDYDPCESTNSGDTSSFLEVCSCSTDIVFDAPACSWVALQNSSGVVSNYAGCLARAVEVEFPYSFIPTIGRSECWPANPTGTAELTVTALVVALGSQLIELVVGFRYLKDPSRGTLLLAAASAAAACGVVTVASVLLSLPGFYAYRKGYPTEVATFWLVWAAAGGAAVGALAELLATEY 370
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1005 |
| Model size | 1766 |
| Exons | 2 |
| Ec32 ortholog | Ec-27_006430.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928076.653193-CDS-E-siliculosus-1a_F_contig1565:14304..15309 | 1622928076.653193-CDS-E-siliculosus-1a_F_contig1565:14304..15309 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1565 14305..15309 + |
| 1696318797.1528988-CDS-E-siliculosus-1a_F_contig1565:14304..15309 | 1696318797.1528988-CDS-E-siliculosus-1a_F_contig1565:14304..15309 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1565 14305..15309 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1565.3264.1 >prot_E-siliculosus-1a_F_contig1565.3264.1 ID=prot_E-siliculosus-1a_F_contig1565.3264.1|Name=mRNA_E-siliculosus-1a_F_contig1565.3264.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=335bp
MEEASVALSPSEKSKKSTDGRQDNTSDTADGKGHVLGRISYCCGIDCSDI
SGRSRRGLIISGACLTAGIVLELVATLWAFRQAVEAGGLDGQANCDEDGI
LFMQQLSVVTQEVCSQQIDSDLFLSETGFGGDYDPCESTNSGDTSSFLEV
CSCSTDIVFDAPACSWVALQNSSVVSNYAGCLARAVEVEFPHSFIPTIGR
SECWPANPTGTAELTVTALVVALGSQLLEAMVGFLYLKDPSRGTVLLAAA
SAAAACGVVTVASVLLSLPGFYAYRKGYPTEVATFWLVWAAAGGAAVGAL
AELVATEFSWRKVGCRTSARSAMGSSGWAQRQWR* back to topmRNA from alignment at E-siliculosus-1a_F_contig1565:13534..15885+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1565.3264.1 ID=mRNA_E-siliculosus-1a_F_contig1565.3264.1|Name=mRNA_E-siliculosus-1a_F_contig1565.3264.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2352bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1565:13534..15885+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGAGCGGGGTCATTCGGGCGGAGCTAAAGATCCAAGCGAACGCGGG
GCGTCGGGGAGTAGGCCACACGCTACATATTGTATTTGTACCCCGTATGT
TTTCAGGGAGGCGAACCGAGGCAGGCTGGAGAAGAAGAGAACGCTCAAGG
TGGTGTGCAGAGGTGAGTCTGGGCATGAACGGCCACCCTCCAGTAGAAGA
AGCACCTTGATTTGGGATGCCTGTTCAGTTGAACACCATCGCCACAAATG
CAGCGTCATTTTGCCCCACCCGGCAGCCCCAGACGAAACGGAGACACCGG
CAGCGGTTGGGCGGCGCTCCGCCCTCACAGCAGTGAACCTGCCGGCCTAT
CTTTGCCGAAAGATGCAGAACAGCTGCAGACCACAAAGCACTGAGCAAAC
GGTACGATCACACCAAGAGCAGGGTCAAGGAGAGGCATGATCATTTTCCA
AGGACGTGCCCCGAATTTTTTGTTTGGTAGACTCGGGTCGCAATGCCAGC
GGTGCCAACGTGGACCTCGCTGGGTGGGAGCGTAAGGGGCATTTGCCAGG
TCACCGAAGGATATTTGACAACGCTTGGGCATCGGGACTACTCTCCCGAC
ATGAGATACATTCCCATGAAAACTTGTTTGAAGCCATAATACTTCGTAGA
CATGATATCTACAGAAAATATCACCGCTCCACAACGAACAATCCTGCCCT
TCATACCCTGATCATGTTGCTCATGAACGCCCTTAAATGCTGTTCCAGAA
GGGCGGTCATAATAGGTTGCTATGGAAGAAGCTTCTGTCGCCCTGTCGCC
GTCCGAGAAGAGTAAGAAGAGCACCGATGGGAGACAAGATAATACGAGCG
ACACCGCCGATGGCAAAGGGCACGTATTGGGACGAATTTCCTACTGCTGC
GGAATTGATTGCAGTGACATCAGCGGCCGGAGCCGTCGTGGACTTATAAT
TTCTGGGGCATGTTTGACAGCCGGAATTGTTCTGGAGCTGGTCGCAACCC
TCTGGGCGTTTCGGCAAGCCGTCGAAGCGGGGGGTCTGGATGGTCAGGCC
AATTGCGATGAGGACGGAATTTTGTTTATGCAACAGCTTAGCGTTGTCAC
GCAGGAGGTGTGCAGCCAACAGATCGATTCGGATCTGTTCCTGAGTGAAA
CAGGTTTCGGCGGCGACTACGACCCTTGCGAATCCACAAATTCCGGGGAC
ACTTCGTCATTTCTGGAGGTGTGTAGCTGCTCCACCGATATTGTTTTTGA
TGCGCCTGCCTGTTCTTGGGTGGCTCTCCAAAATTCGAGCGTTGTTTCGA
ACTACGCTGGCTGCCTAGCGCGAGCAGTCGAAGTCGAGTTTCCGCATTCC
TTCATACCAACGATCGGTCGTTCCGAGTGTTGGCCGGCAAACCCTACCGG
CACAGCCGAGCTTACCGTGACTGCTCTGGTGGTAGCTCTGGGCAGCCAGC
TATTAGAGGCGATGGTGGGTTTCTTGTACCTGAAGGATCCGTCCCGCGGC
ACCGTTCTCCTCGCGGCGGCGTCAGCCGCCGCCGCTTGTGGGGTAGTGAC
CGTGGCATCGGTGCTTCTCTCCCTCCCCGGCTTCTACGCCTACAGGAAAG
GCTACCCCACCGAGGTGGCGACGTTTTGGCTTGTGTGGGCAGCAGCCGGC
GGCGCGGCCGTGGGTGCCCTGGCAGAATTGGTAGCTACGGAGTTTTCCTG
GCGAAAGGTCGGCTGCCGTACCTCGGCGCGTTCGGCAATGGGCTCGTCTG
GCTGGGCTCAGCGGCAATGGAGGTAATCGTCGCGTCGTTCCTTGTCTGGG
AAGGGGAGCGGGTCACGACCTGGGAACTTCTGAGGGACGGAGTTATCGGT
CTGGTCACCGTCGAGTTAGCCGGTTTGCTGGCGATATGGGCCGCACGCTT
CTTGTGGACCAGGGCCAAGCTATTGTTGGCGGCCAAGGGGTGAACGGGGG
CGGCTGATATTGGCTGAGCCTTTTGGGTTCTCCCTGCGATCTGTCCCGAA
TAAGACCGACGTGTGTATGTACAAAGAGAAGATAACAGGCGTTGGAGAGC
TTCGAAAGCTTGAGGCGAGCAAGGGACCATTAGGGACCATTAGTTGTGCG
GATGCTTGGACTGGGCAAGGAGGCGTGACACACGTGAACCCCGGGGCGGT
AAAATTTGTTGTTTGCGTCCGCCCTCATTCCGCCCTGTTTGTTGCGTGGT
GTTGGCTGTAGGGCTCTAGAGGAGACCGGCCATGATGGAGGCGTCGGCGT
TCTGTATCCCTTGCCGCGAATAGTGAAGACACGACGGAACAATATTGGCT
TCATGTGGTGTGGGCGGGTCGGCGACAGGAAAAGTAATGGCATCGCTGCT
GG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1565:13534..15885+ >mRNA_E-siliculosus-1a_F_contig1565.3264.1 ID=mRNA_E-siliculosus-1a_F_contig1565.3264.1|Name=mRNA_E-siliculosus-1a_F_contig1565.3264.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2010bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1565:13534..15885+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAAGAAGCTTCTGTCGCCCTGTCGCCGTCCGAGAAGAGTAAGAAGAG
CACCGATGGGAGACAAGATAATACGAGCGACACCGCCGATGGCAAAGGGC
ACGTATTGGGACGAATTTCCTACTGCTGCGGAATTGATTGCAGTGACATC
AGCGGCCGGAGCCGTCGTGGACTTATAATTTCTGGGGCATGTTTGACAGC
CGGAATTGTTCTGGAGCTGGTCGCAACCCTCTGGGCGTTTCGGCAAGCCG
TCGAAGCGGGGGGTCTGGATGGTCAGGCCAATTGCGATGAGGACGGAATT
TTGTTTATGCAACAGCTTAGCGTTGTCACGCAGGAGGTGTGCAGCCAACA
GATCGATTCGGATCTGTTCCTGAGTGAAACAGGTTTCGGCGGCGACTACG
ACCCTTGCGAATCCACAAATTCCGGGGACACTTCGTCATTTCTGGAGGTG
TGTAGCTGCTCCACCGATATTGTTTTTGATGCGCCTGCCTGTTCTTGGGT
GGCTCTCCAAAATTCGAGCGTTGTTTCGAACTACGCTGGCTGCCTAGCGC
GAGCAGTCGAAGTCGAGTTTCCGCATTCCTTCATACCAACGATCGGTCGT
TCCGAGTGTTGGCCGGCAAACCCTACCGGCACAGCCGAGCTTACCGTGAC
TGCTCTGGTGGTAGCTCTGGGCAGCCAGCTATTAGAGGCGATGGTGGGTT
TCTTGTACCTGAAGGATCCGTCCCGCGGCACCGTTCTCCTCGCGGCGGCG
TCAGCCGCCGCCGCTTGTGGGGTAGTGACCGTGGCATCGGTGCTTCTCTC
CCTCCCCGGCTTCTACGCCTACAGGAAAGGCTACCCCACCGAGGTGGCGA
CGTTTTGGCTTGTGTGGGCAGCAGCCGGCGGCGCGGCCGTGGGTGCCCTG
GCAGAATTGGTAGCTACGGAGTTTTCCTGGCGAAAGGTCGGCTGCCGTAC
CTCGGCGCGTTCGGCAATGGGCTCGTCTGGCTGGGCTCAGCGGCAATGGA
GGTAAATGGAAGAAGCTTCTGTCGCCCTGTCGCCGTCCGAGAAGAGTAAG
AAGAGCACCGATGGGAGACAAGATAATACGAGCGACACCGCCGATGGCAA
AGGGCACGTATTGGGACGAATTTCCTACTGCTGCGGAATTGATTGCAGTG
ACATCAGCGGCCGGAGCCGTCGTGGACTTATAATTTCTGGGGCATGTTTG
ACAGCCGGAATTGTTCTGGAGCTGGTCGCAACCCTCTGGGCGTTTCGGCA
AGCCGTCGAAGCGGGGGGTCTGGATGGTCAGGCCAATTGCGATGAGGACG
GAATTTTGTTTATGCAACAGCTTAGCGTTGTCACGCAGGAGGTGTGCAGC
CAACAGATCGATTCGGATCTGTTCCTGAGTGAAACAGGTTTCGGCGGCGA
CTACGACCCTTGCGAATCCACAAATTCCGGGGACACTTCGTCATTTCTGG
AGGTGTGTAGCTGCTCCACCGATATTGTTTTTGATGCGCCTGCCTGTTCT
TGGGTGGCTCTCCAAAATTCGAGCGTTGTTTCGAACTACGCTGGCTGCCT
AGCGCGAGCAGTCGAAGTCGAGTTTCCGCATTCCTTCATACCAACGATCG
GTCGTTCCGAGTGTTGGCCGGCAAACCCTACCGGCACAGCCGAGCTTACC
GTGACTGCTCTGGTGGTAGCTCTGGGCAGCCAGCTATTAGAGGCGATGGT
GGGTTTCTTGTACCTGAAGGATCCGTCCCGCGGCACCGTTCTCCTCGCGG
CGGCGTCAGCCGCCGCCGCTTGTGGGGTAGTGACCGTGGCATCGGTGCTT
CTCTCCCTCCCCGGCTTCTACGCCTACAGGAAAGGCTACCCCACCGAGGT
GGCGACGTTTTGGCTTGTGTGGGCAGCAGCCGGCGGCGCGGCCGTGGGTG
CCCTGGCAGAATTGGTAGCTACGGAGTTTTCCTGGCGAAAGGTCGGCTGC
CGTACCTCGGCGCGTTCGGCAATGGGCTCGTCTGGCTGGGCTCAGCGGCA
ATGGAGGTAA back to top
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