prot_E-siliculosus-1a_F_contig1564.3256.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1564.3256.1
Unique Nameprot_E-siliculosus-1a_F_contig1564.3256.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length455
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 807 bits (2085), Expect = 7.780e-288
Identity = 443/454 (97.58%), Postives = 443/454 (97.58%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 454
            MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEK   VLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGS   XXXXXXXXXXXXXXX  XXXXXXXXXXX  AAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 
Sbjct:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEK---VLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVG 451          
BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 610 bits (1573), Expect = 2.080e-209
Identity = 317/492 (64.43%), Postives = 370/492 (75.20%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA----EAGG----------------------------GGE------LCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 454
            M   L  + V+FPYD+ YPEQY YM ELK +LDAKGHCLLEMPTGTGKTVCLI+LIT+YQ+ HPEVGKLIYCTRTVPEM+KC+EE+KRVI YR++QLGP G K   VLALCLSSRRNLCIH+RV+E++DREAVDGACRDMTASWVR++A    + GG                            GGE      LC+F+E Y ANGSD+ MP+GIYS++DLK+FG+EKGWCPYFLARH+INHAN+LVYNYQYMLDPKVAG+VSRELEAESVVVFDEAHNIDNVCTEALSV L++ +L+AASRCLG++SSKV +MK+ DQ RLN EYQRLV+GLAD+  G    GV G                                    A + + ANPALPAD+L EAVPGNIRRAEHFVSF+RK++EH K R+R  +VESETPLAF+HR+QQ T +ERKPL+F YSRLNSLLRTLEVT LDDFRPL  VADFATLV+
Sbjct:    1 MIFTLGDITVWFPYDYCYPEQYAYMSELKTTLDAKGHCLLEMPTGTGKTVCLIALITAYQYQHPEVGKLIYCTRTVPEMVKCVEEIKRVIRYREEQLGPAGSK---VLALCLSSRRNLCIHQRVLEDADREAVDGACRDMTASWVRQRAGVKRDKGGARGANGXXXXXXXXXXXXXXXXXXXXAQGGEVDASIELCQFYEEYDANGSDSVMPSGIYSIEDLKDFGREKGWCPYFLARHVINHANILVYNYQYMLDPKVAGLVSRELEAESVVVFDEAHNIDNVCTEALSVQLNRHNLEAASRCLGRVSSKVTDMKQHDQRRLNEEYQRLVNGLADNAAGPLPAGVQGI-----------------------------------ADNNMLANPALPADVLAEAVPGNIRRAEHFVSFLRKLIEHLKVRIRATNVESETPLAFLHRLQQNTTIERKPLRFTYSRLNSLLRTLEVTNLDDFRPLSAVADFATLVA 454          
BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC)

HSP 1 Score: 600 bits (1548), Expect = 5.550e-205
Identity = 307/456 (67.32%), Postives = 363/456 (79.61%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPA--LPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 454
            +R DLDGLD+FFPYD +Y EQY+YMLELKR+LDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEM+KC+EE+++VI YR   +G EG K   VLA+CLSSRRNLCIHERV+EESDREAVD ACR MTASWVR++       ELC+++E Y  NG+DA + +GIYSLDDLKE GK++GWCPYFLARHIINHAN+L+YNYQY+LDPKVAG+VS+ELEAES+VVFDEAHNIDNVC EALSV+LD+RSLD A+RCLGK+S++V++MK+ D  +LN EYQRLV GLA+SG   A GG AG+                                 A+ ADA+ ANP   LP  + QEAVPGNIRRAEHF++FM+KVVEH KT +RV S + ++PLAF+H +Q  TALE KPL+F YSRLNSLLRTLEVT LD+F PL DVADFATLV+
Sbjct:    2 VRFDLDGLDLFFPYDRLYEEQYNYMLELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMVKCVEEVRKVIDYRVKCIGAEGGK---VLAVCLSSRRNLCIHERVMEESDREAVDSACRSMTASWVRQRGATSANVELCQYYEEYEKNGTDAGIAHGIYSLDDLKELGKDRGWCPYFLARHIINHANILIYNYQYVLDPKVAGLVSKELEAESIVVFDEAHNIDNVCIEALSVELDERSLDKATRCLGKLSTEVSKMKQKDANKLNEEYQRLVRGLAESG---ALGGAAGAGSA------------------------------ASPADAMLANPVPRLPDALAQEAVPGNIRRAEHFLTFMKKVVEHLKTLLRVDSTQKQSPLAFLHYLQTKTALEVKPLRFTYSRLNSLLRTLEVTHLDEFNPLQDVADFATLVA 421          
BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: A0A7R9U4D1_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4D1_9STRA)

HSP 1 Score: 557 bits (1436), Expect = 4.980e-188
Identity = 281/454 (61.89%), Postives = 343/454 (75.55%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 454
            MR  L+ +DVFFPY  +Y EQ+DYM+ELKR+L+A GH  LEMPTGTGKTVCL+SLITS QFA PE+GK IYCTRTVPEM+KC+EELKRV+ YR + +G EG K   +LALCLSSRRN+CIH+RV+EESDREAVD ACR MTASWVRK+A+ G   ELCEF+E Y ANG+D A+P GIYSL+DL++ G+E+GWCPYFLARH++ HANVL+YNYQYMLDPKVAG+VS ELE +SVVVFDEAHNIDNVC EA+SV + +  LDA++R LG ++SKV EMK +D  RLNAEYQRLVSGLA SG    S  VA                                       D+I +NP+LPADIL E+VPGNIR+AEHF++FMRK+V H K ++R    + ETP AF+H++ ++T LE KP+KF YSRLNSLLRTLEVT LDD   L ++ADFATL++
Sbjct:   45 MRFRLEDVDVFFPYPSVYREQFDYMVELKRALEAPGHAALEMPTGTGKTVCLMSLITSVQFARPEMGKFIYCTRTVPEMVKCVEELKRVVNYRAECVGAEGRK---ILALCLSSRRNMCIHDRVLEESDREAVDAACRSMTASWVRKRAQEGASVELCEFYEQYDANGTDTAIPYGIYSLEDLRDLGRERGWCPYFLARHVLKHANVLIYNYQYMLDPKVAGLVSSELEEDSVVVFDEAHNIDNVCIEAMSVQISRPILDASTRSLGALASKVEEMKASDVERLNAEYQRLVSGLAMSGPAPGSYTVA--------------------------------------TDSILSNPSLPADILAESVPGNIRKAEHFLTFMRKIVRHLKDQLRNPEAKWETPQAFLHQLHEMTGLEAKPMKFTYSRLNSLLRTLEVTSLDDHSDLAEIADFATLLA 457          
BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: A0A7S2GG08_9STRA (DNA helicase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG08_9STRA)

HSP 1 Score: 534 bits (1375), Expect = 9.070e-184
Identity = 283/455 (62.20%), Postives = 330/455 (72.53%), Query Frame = 0
Query:    5 LDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGG-ELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRV----RVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 454
            L+G+DV+FPY  MYPEQY YMLE+K +LDAKGH LLEMPTGTGKT C++SL+ SYQ AHPE+GKLIYCTRTVPEM KCI ELKRV+      +G  G  AS++LALCLSSRRN+CIHE V+E +DREAVD  CRDMTASWVR+KA+A  G  E C+F+E Y   GSDAA+PNGI+SLDDLK  G+EKGWCPYFLARH+INHA VLVYNYQYMLDPKVAGMVSRELE+ESVV+FDEAHNIDNVC EALSV LD+RS+ AA + L  IS+KV E+K  D +RL  EY+RLV+GL D   G+                                             D I ANP+LPAD+L EAVPGNIRRAEHFVSF+R ++ H + R+       +VE+ETPLAFVHR+   T  E KPLKFAYSRLNSLLRTLEVT LD + PL DV D  TLV+
Sbjct:   46 LEGMDVYFPYKKMYPEQYKYMLEMKHALDAKGHGLLEMPTGTGKTACVLSLVVSYQLAHPEMGKLIYCTRTVPEMSKCIGELKRVVQNILAHVGQAGA-ASSLLALCLSSRRNMCIHETVMEAADREAVDSLCRDMTASWVRQKAQASPGSVETCDFYEEYDKAGSDAAIPNGIFSLDDLKVLGREKGWCPYFLARHVINHAKVLVYNYQYMLDPKVAGMVSRELESESVVIFDEAHNIDNVCIEALSVALDRRSITAAHQSLDAISTKVREVKTRDASRLQDEYRRLVAGLNDGAGGQT--------------------------------------------DTILANPSLPADVLSEAVPGNIRRAEHFVSFLRTILTHLEQRMISTAENDTVETETPLAFVHRLCGDTHHEIKPLKFAYSRLNSLLRTLEVTSLDQYNPLQDVTDLITLVA 455          
BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: A0A7S2D9H7_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D9H7_9STRA)

HSP 1 Score: 534 bits (1375), Expect = 1.740e-179
Identity = 283/455 (62.20%), Postives = 330/455 (72.53%), Query Frame = 0
Query:    5 LDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGG-ELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRV----RVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 454
            L+G+DV+FPY  MYPEQY YMLE+K +LDAKGH LLEMPTGTGKT C++SL+ SYQ AHPE+GKLIYCTRTVPEM KCI ELKRV+      +G  G  AS++LALCLSSRRN+CIHE V+E +DREAVD  CRDMTASWVR+KA+A  G  E C+F+E Y   GSDAA+PNGI+SLDDLK  G+EKGWCPYFLARH+INHA VLVYNYQYMLDPKVAGMVSRELE+ESVV+FDEAHNIDNVC EALSV LD+RS+ AA + L  IS+KV E+K  D +RL  EY+RLV+GL D   G+                                             D I ANP+LPAD+L EAVPGNIRRAEHFVSF+R ++ H + R+       +VE+ETPLAFVHR+   T  E KPLKFAYSRLNSLLRTLEVT LD + PL DV D  TLV+
Sbjct:   46 LEGMDVYFPYKKMYPEQYKYMLEMKHALDAKGHGLLEMPTGTGKTACVLSLVVSYQLAHPEMGKLIYCTRTVPEMSKCIGELKRVVQNILAHVGQAGA-ASSLLALCLSSRRNMCIHETVMEAADREAVDSLCRDMTASWVRQKAQASPGSVETCDFYEEYDKAGSDAAIPNGIFSLDDLKVLGREKGWCPYFLARHVINHAKVLVYNYQYMLDPKVAGMVSRELESESVVIFDEAHNIDNVCIEALSVALDRRSITAAHQSLDAISTKVREVKTRDASRLQDEYRRLVAGLNDGAGGQT--------------------------------------------DTILANPSLPADVLSEAVPGNIRRAEHFVSFLRTILTHLEQRMISTAENDTVETETPLAFVHRLCGDTHHEIKPLKFAYSRLNSLLRTLEVTSLDQYNPLQDVTDLITLVA 455          
BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: K3WFP6_GLOUD (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFP6_GLOUD)

HSP 1 Score: 508 bits (1307), Expect = 1.530e-170
Identity = 259/456 (56.80%), Postives = 326/456 (71.49%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGG-ELCEFFEGYSANGSD-AAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 454
            MR+++DGL+V FPY+ MY EQ  YM ELKR+LDA GHC+LEMPTGTGKTV L+SL+ +Y+FAHP  GKLIYCTRTVPEM KC+EELK ++ YRK   G   +    + A+CLSSRRN+C+H RV+  +D EAVDG CR MTASWVR KA    G  E+C F+E Y +  SD   +P GIY++DDLKE G +KGWCPYFL R++++ A+V+VYNYQYMLDPKV+ MVSR  E ES+VVFDEAHNIDNVC EALSV+LD+RSLD ASR L  ISS+V  MK+ D+ARL+AEY+RLV GL      R+S  V                                        D + ANP LP D+L EA+PGNIRRAEHF++FMR+++E+ +TR+RV++VESETP AF+H + Q  ++E KP+KF Y+RLNSL+RTLEVT L++F  L  VADFATLV+
Sbjct:    1 MRVEIDGLEVLFPYERMYAEQLQYMRELKRALDAHGHCMLEMPTGTGKTVSLLSLVLAYKFAHPTAGKLIYCTRTVPEMAKCVEELKNLVAYRKKYYGERAD----LTAVCLSSRRNMCVHPRVMAHADGEAVDGQCRKMTASWVRTKAVTHPGEVEVCSFYENYESRKSDETVLPAGIYNVDDLKELGVQKGWCPYFLTRYVVSFADVIVYNYQYMLDPKVSAMVSRSFEKESIVVFDEAHNIDNVCIEALSVELDRRSLDRASRNLTTISSQVNRMKQADKARLDAEYRRLVEGL------RSSDAVVAPTYTNPNTQQHIDTSN----------------------DILMANPVLPDDVLDEAIPGNIRRAEHFIAFMRRLIEYLRTRIRVRNVESETPQAFLHHLNQAISMETKPMKFCYTRLNSLMRTLEVTNLEEFNSLAAVADFATLVA 424          
BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: B8C2D9_THAPS (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2D9_THAPS)

HSP 1 Score: 504 bits (1299), Expect = 1.200e-169
Identity = 266/465 (57.20%), Postives = 330/465 (70.97%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGG------ELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQS-----VESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 454
            MR +L+GLDVFFPYD +Y EQY YM  LK++LDA GHCLLEMPTGTGKTVCL+SLITSYQ A+P  GKL+YCTRTVPEM   +EEL  V+ YR +QLG      S VLALCLSSRRN+CIHERV+ ESDRE +D ACR MTA W  +KA+           E CE+++G+ + G   +MP+G+Y L++L+++GK K WCPY+L R  INHA+VLV+NYQYMLDPKVA MVS+ELE+ES++VFDEAHNID+VC EALSVD+ +R+L+ A+R LG++SS+V+ +K +D ARL AEYQ LV+GL D GL  A                                         AAA  + +N   P D++ EAVPGNIRRAEHF++FM+K+VEH KTR+R  S     V SETPLAF+HRM   T+LE KPLKFAYSRL+SLLRTL+V  LDDF  L DVADFA+LV+
Sbjct:    1 MRFNLEGLDVFFPYDRIYLEQYQYMRALKQTLDAGGHCLLEMPTGTGKTVCLLSLITSYQLANPNCGKLVYCTRTVPEMNSVMEELGTVLAYRSEQLGA----GSGVLALCLSSRRNMCIHERVLRESDREGIDAACRSMTAPWAIEKAQKARQQQSAQVVETCEYYDGFQSAGEATSMPSGVYDLEELRKWGKNKNWCPYYLTRQAINHASVLVFNYQYMLDPKVAKMVSKELESESIIVFDEAHNIDSVCIEALSVDIHERNLEQATRSLGRLSSEVSRIKASDGARLQAEYQNLVNGLVDQGLLDAP----------------------------------------AAAVGLSSNVLSP-DVINEAVPGNIRRAEHFIAFMKKIVEHLKTRLRAVSGPRGGVISETPLAFLHRMITTTSLEAKPLKFAYSRLSSLLRTLQVPNLDDFNALTDVADFASLVA 420          
BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: A0A2P4X6T2_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6T2_9STRA)

HSP 1 Score: 499 bits (1285), Expect = 1.500e-169
Identity = 256/461 (55.53%), Postives = 329/461 (71.37%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA-EAGGGGE-----LCEFFEGYSANGSD-AAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 454
            M++D+DGL+V FPY+ MY EQ  YM ELKR+LDA+GHC+LEMPTGTGKTV L+SL+ +Y+ AHP  GKLIYCTRTVPEM KC+EE+K+++ YR+   GP+ +    V A+CLSSRRN+C+H RV+  +D E VDG CR MTASWVR +A +A   GE      C F+E Y A  SD   +P+G+YS++DLKE G +KGWCPYFL R+++  A+V+VYNYQYMLDPKV+ +VSR  E ES+VVFDEAHNIDNVC EALSVDLD+RSLD ASR L  +SS+V ++K+ D++RL+AEY+RLV GL      R+S  V                                      A D + ANP LP D+L EA+PGNIRRAEHFV+FMR+++E+ + R+RV+ VESETP AF+H + Q   +E KP+KF Y+RLNSLLRTLEVT L+++  L DVADFATLV+
Sbjct:    1 MKVDIDGLEVLFPYERMYSEQLQYMRELKRALDAQGHCMLEMPTGTGKTVSLLSLVLAYKHAHPTAGKLIYCTRTVPEMAKCVEEIKKLVQYREQHYGPKAQ----VTAVCLSSRRNMCVHPRVMAHADGEDVDGQCRQMTASWVRARAAKAREEGEQMQVETCSFYENYDARKSDDTVLPSGVYSVEDLKEIGAQKGWCPYFLTRYVVTFADVVVYNYQYMLDPKVSQLVSRSFEKESIVVFDEAHNIDNVCIEALSVDLDRRSLDRASRNLTTLSSQVNKLKQADKSRLDAEYRRLVEGL------RSSNAVVAPTYTDPTTNNAIDT----------------------ANDILIANPVLPDDVLDEAIPGNIRRAEHFVAFMRRLIEYLRQRIRVRQVESETPQAFLHHLHQAINMEIKPMKFCYTRLNSLLRTLEVTNLEEYNSLTDVADFATLVA 429          
BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: H3G8C6_PHYRM (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G8C6_PHYRM)

HSP 1 Score: 501 bits (1290), Expect = 3.770e-168
Identity = 254/460 (55.22%), Postives = 328/460 (71.30%), Query Frame = 0
Query:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA-----EAGGGGELCEFFEGYSANGSD-AAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 454
            M++D+DGL+V FPY+ MY EQ  YM ELKR+LDA+GHC+LEMPTGTGKTV L+SL+ +Y+ AHP  GKL+YCTRTVPEM KC+EE+K+++ YR+  LG   +    + A+CLSSRRN+C+H RV+  +D E VDG CR MTASWVR KA     EA    E C F+E Y A  SD   +P G+YS+DDLK+ G +KGWCPYFL R+++  A+V+VYNYQYMLDPKV+ +VSR  E ES++VFDEAHNIDNVC EALSVDLD+RSLD ASR L  +SS+V+++K+ D+A+L+AEY+RLV GL      R+S  V                                    A   D + ANP LP D+L EA+PGNIRRAEHFV+FMR+++E+ + R+RV+ VESETP AF+H + Q  ++E KP+KF Y+RLNSLLRTLEVT L+++  L DVADFATLV+
Sbjct:    1 MKVDIDGLEVLFPYERMYSEQLQYMRELKRALDAQGHCMLEMPTGTGKTVSLLSLVLAYKHAHPTAGKLVYCTRTVPEMAKCVEEIKKLVAYRQQHLGERAQ----LTAVCLSSRRNMCVHPRVMAHADGEDVDGQCRKMTASWVRAKAAKAREEAAADVETCSFYEKYDARKSDDTVLPPGVYSVDDLKDLGVQKGWCPYFLTRYVVTFADVVVYNYQYMLDPKVSQLVSRSFEKESIIVFDEAHNIDNVCIEALSVDLDRRSLDRASRNLTTLSSQVSKLKQADKAKLDAEYRRLVEGL------RSSDAVV-----------------------------------APTHDIMIANPVLPDDVLDEAIPGNIRRAEHFVAFMRRLIEYLRQRIRVRQVESETPQAFLHHLHQAISMEIKPMKFCYTRLNSLLRTLEVTNLEEYNSLADVADFATLVA 415          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI7.780e-28897.58General transcription and DNA repair factor IIH he... [more]
A0A836CJZ4_9STRA2.080e-20964.43General transcription and DNA repair factor IIH he... [more]
K8YZX4_NANGC5.550e-20567.32General transcription and DNA repair factor IIH he... [more]
A0A7R9U4D1_9STRA4.980e-18861.89General transcription and DNA repair factor IIH he... [more]
A0A7S2GG08_9STRA9.070e-18462.20DNA helicase (Fragment) n=1 Tax=Dictyocha speculum... [more]
A0A7S2D9H7_9STRA1.740e-17962.20General transcription and DNA repair factor IIH he... [more]
K3WFP6_GLOUD1.530e-17056.80General transcription and DNA repair factor IIH he... [more]
B8C2D9_THAPS1.200e-16957.20General transcription and DNA repair factor IIH he... [more]
A0A2P4X6T2_9STRA1.500e-16955.53General transcription and DNA repair factor IIH he... [more]
H3G8C6_PHYRM3.770e-16855.22General transcription and DNA repair factor IIH he... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001945RAD3/XPD familyPRINTSPR00852XRODRMPGMNTDcoord: 276..295
score: 55.71
coord: 8..25
score: 66.67
IPR001945RAD3/XPD familyPANTHERPTHR11472:SF1GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPDcoord: 3..453
IPR006554Helicase-like, DEXD box c2 typeSMARTSM00488deadxpdcoord: 8..283
e-value: 2.7E-109
score: 379.1
NoneNo IPR availableGENE3D3.40.50.300coord: 16..292
e-value: 2.7E-54
score: 186.0
NoneNo IPR availablePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 3..453
IPR013020ATP-dependent helicase Rad3/Chl1-likeTIGRFAMTIGR00604TIGR00604coord: 9..300
e-value: 1.9E-86
score: 289.2
IPR010614DEAD2PFAMPF06733DEAD_2coord: 71..259
e-value: 1.3E-49
score: 168.2
IPR010643Helical and beta-bridge domainPFAMPF06777HBBcoord: 344..453
e-value: 1.5E-21
score: 77.0
IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved sitePROSITEPS00690DEAH_ATP_HELICASEcoord: 232..241
IPR014013Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-typePROSITEPS51193HELICASE_ATP_BIND_2coord: 7..293
score: 34.976
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 6..244

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1564contigE-siliculosus-1a_F_contig1564:471..8277 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1564.3256.1mRNA_E-siliculosus-1a_F_contig1564.3256.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1564 471..8603 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1564.3256.1 ID=prot_E-siliculosus-1a_F_contig1564.3256.1|Name=mRNA_E-siliculosus-1a_F_contig1564.3256.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=455bp
MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTV
CLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPE
GEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAE
AGGGGELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARH
IINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEAL
SVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGL
GRASGGVAGSAGGAGGAAAAGGGGGGAAGAGASAAVGGGATEVAAAADAI
PANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETP
LAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFA
TLVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014013Helic_SF1/SF2_ATP-bd_DinG/Rad3
IPR002464DNA/RNA_helicase_DEAH_CS
IPR010643HBB
IPR010614DEAD_2
IPR013020Rad3/Chl1-like
IPR006554Helicase-like_DEXD_c2
IPR001945RAD3/XPD