mRNA_E-siliculosus-1a_F_contig1564.3256.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1564.3256.1
Unique Name	mRNA_E-siliculosus-1a_F_contig1564.3256.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 808 bits (2086), Expect = 3.810e-286
Identity = 443/454 (97.58%), Postives = 443/454 (97.58%), Query Frame = 3

Query:  327 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 1688
            MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEK   VLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGS   XXXXXXXXXXXXXXX  XXXXXXXXXXX  AAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 
Sbjct:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEK---VLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVG 451

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BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 610 bits (1574), Expect = 8.430e-208
Identity = 317/492 (64.43%), Postives = 370/492 (75.20%), Query Frame = 3

Query:  327 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA----EAGG----------------------------GGE------LCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 1688
            M   L  + V+FPYD+ YPEQY YM ELK +LDAKGHCLLEMPTGTGKTVCLI+LIT+YQ+ HPEVGKLIYCTRTVPEM+KC+EE+KRVI YR++QLGP G K   VLALCLSSRRNLCIH+RV+E++DREAVDGACRDMTASWVR++A    + GG                            GGE      LC+F+E Y ANGSD+ MP+GIYS++DLK+FG+EKGWCPYFLARH+INHAN+LVYNYQYMLDPKVAG+VSRELEAESVVVFDEAHNIDNVCTEALSV L++ +L+AASRCLG++SSKV +MK+ DQ RLN EYQRLV+GLAD+  G    GV G                                    A + + ANPALPAD+L EAVPGNIRRAEHFVSF+RK++EH K R+R  +VESETPLAF+HR+QQ T +ERKPL+F YSRLNSLLRTLEVT LDDFRPL  VADFATLV+
Sbjct:    1 MIFTLGDITVWFPYDYCYPEQYAYMSELKTTLDAKGHCLLEMPTGTGKTVCLIALITAYQYQHPEVGKLIYCTRTVPEMVKCVEEIKRVIRYREEQLGPAGSK---VLALCLSSRRNLCIHQRVLEDADREAVDGACRDMTASWVRQRAGVKRDKGGARGANGXXXXXXXXXXXXXXXXXXXXAQGGEVDASIELCQFYEEYDANGSDSVMPSGIYSIEDLKDFGREKGWCPYFLARHVINHANILVYNYQYMLDPKVAGLVSRELEAESVVVFDEAHNIDNVCTEALSVQLNRHNLEAASRCLGRVSSKVTDMKQHDQRRLNEEYQRLVNGLADNAAGPLPAGVQGI-----------------------------------ADNNMLANPALPADVLAEAVPGNIRRAEHFVSFLRKLIEHLKVRIRATNVESETPLAFLHRLQQNTTIERKPLRFTYSRLNSLLRTLEVTNLDDFRPLSAVADFATLVA 454

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BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC)

HSP 1 Score: 601 bits (1549), Expect = 2.230e-203
Identity = 307/456 (67.32%), Postives = 363/456 (79.61%), Query Frame = 3

Query:  327 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPA--LPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 1688
            +R DLDGLD+FFPYD +Y EQY+YMLELKR+LDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEM+KC+EE+++VI YR   +G EG K   VLA+CLSSRRNLCIHERV+EESDREAVD ACR MTASWVR++       ELC+++E Y  NG+DA + +GIYSLDDLKE GK++GWCPYFLARHIINHAN+L+YNYQY+LDPKVAG+VS+ELEAES+VVFDEAHNIDNVC EALSV+LD+RSLD A+RCLGK+S++V++MK+ D  +LN EYQRLV GLA+SG   A GG AG+                                 A+ ADA+ ANP   LP  + QEAVPGNIRRAEHF++FM+KVVEH KT +RV S + ++PLAF+H +Q  TALE KPL+F YSRLNSLLRTLEVT LD+F PL DVADFATLV+
Sbjct:    2 VRFDLDGLDLFFPYDRLYEEQYNYMLELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMVKCVEEVRKVIDYRVKCIGAEGGK---VLAVCLSSRRNLCIHERVMEESDREAVDSACRSMTASWVRQRGATSANVELCQYYEEYEKNGTDAGIAHGIYSLDDLKELGKDRGWCPYFLARHIINHANILIYNYQYVLDPKVAGLVSKELEAESIVVFDEAHNIDNVCIEALSVELDERSLDKATRCLGKLSTEVSKMKQKDANKLNEEYQRLVRGLAESG---ALGGAAGAGSA------------------------------ASPADAMLANPVPRLPDALAQEAVPGNIRRAEHFLTFMKKVVEHLKTLLRVDSTQKQSPLAFLHYLQTKTALEVKPLRFTYSRLNSLLRTLEVTHLDEFNPLQDVADFATLVA 421

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BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: A0A7R9U4D1_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4D1_9STRA)

HSP 1 Score: 558 bits (1437), Expect = 1.880e-186
Identity = 281/454 (61.89%), Postives = 343/454 (75.55%), Query Frame = 3

Query:  327 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGGELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 1688
            MR  L+ +DVFFPY  +Y EQ+DYM+ELKR+L+A GH  LEMPTGTGKTVCL+SLITS QFA PE+GK IYCTRTVPEM+KC+EELKRV+ YR + +G EG K   +LALCLSSRRN+CIH+RV+EESDREAVD ACR MTASWVRK+A+ G   ELCEF+E Y ANG+D A+P GIYSL+DL++ G+E+GWCPYFLARH++ HANVL+YNYQYMLDPKVAG+VS ELE +SVVVFDEAHNIDNVC EA+SV + +  LDA++R LG ++SKV EMK +D  RLNAEYQRLVSGLA SG    S  VA                                       D+I +NP+LPADIL E+VPGNIR+AEHF++FMRK+V H K ++R    + ETP AF+H++ ++T LE KP+KF YSRLNSLLRTLEVT LDD   L ++ADFATL++
Sbjct:   45 MRFRLEDVDVFFPYPSVYREQFDYMVELKRALEAPGHAALEMPTGTGKTVCLMSLITSVQFARPEMGKFIYCTRTVPEMVKCVEELKRVVNYRAECVGAEGRK---ILALCLSSRRNMCIHDRVLEESDREAVDAACRSMTASWVRKRAQEGASVELCEFYEQYDANGTDTAIPYGIYSLEDLRDLGRERGWCPYFLARHVLKHANVLIYNYQYMLDPKVAGLVSSELEEDSVVVFDEAHNIDNVCIEAMSVQISRPILDASTRSLGALASKVEEMKASDVERLNAEYQRLVSGLAMSGPAPGSYTVA--------------------------------------TDSILSNPSLPADILAESVPGNIRKAEHFLTFMRKIVRHLKDQLRNPEAKWETPQAFLHQLHEMTGLEAKPMKFTYSRLNSLLRTLEVTSLDDHSDLAEIADFATLLA 457

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BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: A0A7S2GG08_9STRA (DNA helicase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG08_9STRA)

HSP 1 Score: 535 bits (1377), Expect = 2.320e-182
Identity = 283/455 (62.20%), Postives = 330/455 (72.53%), Query Frame = 3

Query:  339 LDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGG-ELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRV----RVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 1688
            L+G+DV+FPY  MYPEQY YMLE+K +LDAKGH LLEMPTGTGKT C++SL+ SYQ AHPE+GKLIYCTRTVPEM KCI ELKRV+      +G  G  AS++LALCLSSRRN+CIHE V+E +DREAVD  CRDMTASWVR+KA+A  G  E C+F+E Y   GSDAA+PNGI+SLDDLK  G+EKGWCPYFLARH+INHA VLVYNYQYMLDPKVAGMVSRELE+ESVV+FDEAHNIDNVC EALSV LD+RS+ AA + L  IS+KV E+K  D +RL  EY+RLV+GL D   G+                                             D I ANP+LPAD+L EAVPGNIRRAEHFVSF+R ++ H + R+       +VE+ETPLAFVHR+   T  E KPLKFAYSRLNSLLRTLEVT LD + PL DV D  TLV+
Sbjct:   46 LEGMDVYFPYKKMYPEQYKYMLEMKHALDAKGHGLLEMPTGTGKTACVLSLVVSYQLAHPEMGKLIYCTRTVPEMSKCIGELKRVVQNILAHVGQAGA-ASSLLALCLSSRRNMCIHETVMEAADREAVDSLCRDMTASWVRQKAQASPGSVETCDFYEEYDKAGSDAAIPNGIFSLDDLKVLGREKGWCPYFLARHVINHAKVLVYNYQYMLDPKVAGMVSRELESESVVIFDEAHNIDNVCIEALSVALDRRSITAAHQSLDAISTKVREVKTRDASRLQDEYRRLVAGLNDGAGGQT--------------------------------------------DTILANPSLPADVLSEAVPGNIRRAEHFVSFLRTILTHLEQRMISTAENDTVETETPLAFVHRLCGDTHHEIKPLKFAYSRLNSLLRTLEVTSLDQYNPLQDVTDLITLVA 455

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BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: A0A7S2D9H7_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D9H7_9STRA)

HSP 1 Score: 535 bits (1377), Expect = 4.490e-178
Identity = 283/455 (62.20%), Postives = 330/455 (72.53%), Query Frame = 3

Query:  339 LDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGG-ELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRV----RVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 1688
            L+G+DV+FPY  MYPEQY YMLE+K +LDAKGH LLEMPTGTGKT C++SL+ SYQ AHPE+GKLIYCTRTVPEM KCI ELKRV+      +G  G  AS++LALCLSSRRN+CIHE V+E +DREAVD  CRDMTASWVR+KA+A  G  E C+F+E Y   GSDAA+PNGI+SLDDLK  G+EKGWCPYFLARH+INHA VLVYNYQYMLDPKVAGMVSRELE+ESVV+FDEAHNIDNVC EALSV LD+RS+ AA + L  IS+KV E+K  D +RL  EY+RLV+GL D   G+                                             D I ANP+LPAD+L EAVPGNIRRAEHFVSF+R ++ H + R+       +VE+ETPLAFVHR+   T  E KPLKFAYSRLNSLLRTLEVT LD + PL DV D  TLV+
Sbjct:   46 LEGMDVYFPYKKMYPEQYKYMLEMKHALDAKGHGLLEMPTGTGKTACVLSLVVSYQLAHPEMGKLIYCTRTVPEMSKCIGELKRVVQNILAHVGQAGA-ASSLLALCLSSRRNMCIHETVMEAADREAVDSLCRDMTASWVRQKAQASPGSVETCDFYEEYDKAGSDAAIPNGIFSLDDLKVLGREKGWCPYFLARHVINHAKVLVYNYQYMLDPKVAGMVSRELESESVVIFDEAHNIDNVCIEALSVALDRRSITAAHQSLDAISTKVREVKTRDASRLQDEYRRLVAGLNDGAGGQT--------------------------------------------DTILANPSLPADVLSEAVPGNIRRAEHFVSFLRTILTHLEQRMISTAENDTVETETPLAFVHRLCGDTHHEIKPLKFAYSRLNSLLRTLEVTSLDQYNPLQDVTDLITLVA 455

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BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: K3WFP6_GLOUD (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFP6_GLOUD)

HSP 1 Score: 508 bits (1308), Expect = 5.330e-169
Identity = 259/456 (56.80%), Postives = 326/456 (71.49%), Query Frame = 3

Query:  327 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGG-ELCEFFEGYSANGSD-AAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 1688
            MR+++DGL+V FPY+ MY EQ  YM ELKR+LDA GHC+LEMPTGTGKTV L+SL+ +Y+FAHP  GKLIYCTRTVPEM KC+EELK ++ YRK   G   +    + A+CLSSRRN+C+H RV+  +D EAVDG CR MTASWVR KA    G  E+C F+E Y +  SD   +P GIY++DDLKE G +KGWCPYFL R++++ A+V+VYNYQYMLDPKV+ MVSR  E ES+VVFDEAHNIDNVC EALSV+LD+RSLD ASR L  ISS+V  MK+ D+ARL+AEY+RLV GL      R+S  V                                        D + ANP LP D+L EA+PGNIRRAEHF++FMR+++E+ +TR+RV++VESETP AF+H + Q  ++E KP+KF Y+RLNSL+RTLEVT L++F  L  VADFATLV+
Sbjct:    1 MRVEIDGLEVLFPYERMYAEQLQYMRELKRALDAHGHCMLEMPTGTGKTVSLLSLVLAYKFAHPTAGKLIYCTRTVPEMAKCVEELKNLVAYRKKYYGERAD----LTAVCLSSRRNMCVHPRVMAHADGEAVDGQCRKMTASWVRTKAVTHPGEVEVCSFYENYESRKSDETVLPAGIYNVDDLKELGVQKGWCPYFLTRYVVSFADVIVYNYQYMLDPKVSAMVSRSFEKESIVVFDEAHNIDNVCIEALSVELDRRSLDRASRNLTTISSQVNRMKQADKARLDAEYRRLVEGL------RSSDAVVAPTYTNPNTQQHIDTSN----------------------DILMANPVLPDDVLDEAIPGNIRRAEHFIAFMRRLIEYLRTRIRVRNVESETPQAFLHHLNQAISMETKPMKFCYTRLNSLMRTLEVTNLEEFNSLAAVADFATLVA 424

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BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: B8C2D9_THAPS (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2D9_THAPS)

HSP 1 Score: 505 bits (1300), Expect = 4.140e-168
Identity = 266/465 (57.20%), Postives = 330/465 (70.97%), Query Frame = 3

Query:  327 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAGGGG------ELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQS-----VESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 1688
            MR +L+GLDVFFPYD +Y EQY YM  LK++LDA GHCLLEMPTGTGKTVCL+SLITSYQ A+P  GKL+YCTRTVPEM   +EEL  V+ YR +QLG      S VLALCLSSRRN+CIHERV+ ESDRE +D ACR MTA W  +KA+           E CE+++G+ + G   +MP+G+Y L++L+++GK K WCPY+L R  INHA+VLV+NYQYMLDPKVA MVS+ELE+ES++VFDEAHNID+VC EALSVD+ +R+L+ A+R LG++SS+V+ +K +D ARL AEYQ LV+GL D GL  A                                         AAA  + +N   P D++ EAVPGNIRRAEHF++FM+K+VEH KTR+R  S     V SETPLAF+HRM   T+LE KPLKFAYSRL+SLLRTL+V  LDDF  L DVADFA+LV+
Sbjct:    1 MRFNLEGLDVFFPYDRIYLEQYQYMRALKQTLDAGGHCLLEMPTGTGKTVCLLSLITSYQLANPNCGKLVYCTRTVPEMNSVMEELGTVLAYRSEQLGA----GSGVLALCLSSRRNMCIHERVLRESDREGIDAACRSMTAPWAIEKAQKARQQQSAQVVETCEYYDGFQSAGEATSMPSGVYDLEELRKWGKNKNWCPYYLTRQAINHASVLVFNYQYMLDPKVAKMVSKELESESIIVFDEAHNIDSVCIEALSVDIHERNLEQATRSLGRLSSEVSRIKASDGARLQAEYQNLVNGLVDQGLLDAP----------------------------------------AAAVGLSSNVLSP-DVINEAVPGNIRRAEHFIAFMKKIVEHLKTRLRAVSGPRGGVISETPLAFLHRMITTTSLEAKPLKFAYSRLSSLLRTLQVPNLDDFNALTDVADFASLVA 420

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BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: A0A2P4X6T2_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6T2_9STRA)

HSP 1 Score: 499 bits (1286), Expect = 5.130e-168
Identity = 256/461 (55.53%), Postives = 329/461 (71.37%), Query Frame = 3

Query:  327 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA-EAGGGGE-----LCEFFEGYSANGSD-AAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 1688
            M++D+DGL+V FPY+ MY EQ  YM ELKR+LDA+GHC+LEMPTGTGKTV L+SL+ +Y+ AHP  GKLIYCTRTVPEM KC+EE+K+++ YR+   GP+ +    V A+CLSSRRN+C+H RV+  +D E VDG CR MTASWVR +A +A   GE      C F+E Y A  SD   +P+G+YS++DLKE G +KGWCPYFL R+++  A+V+VYNYQYMLDPKV+ +VSR  E ES+VVFDEAHNIDNVC EALSVDLD+RSLD ASR L  +SS+V ++K+ D++RL+AEY+RLV GL      R+S  V                                      A D + ANP LP D+L EA+PGNIRRAEHFV+FMR+++E+ + R+RV+ VESETP AF+H + Q   +E KP+KF Y+RLNSLLRTLEVT L+++  L DVADFATLV+
Sbjct:    1 MKVDIDGLEVLFPYERMYSEQLQYMRELKRALDAQGHCMLEMPTGTGKTVSLLSLVLAYKHAHPTAGKLIYCTRTVPEMAKCVEEIKKLVQYREQHYGPKAQ----VTAVCLSSRRNMCVHPRVMAHADGEDVDGQCRQMTASWVRARAAKAREEGEQMQVETCSFYENYDARKSDDTVLPSGVYSVEDLKEIGAQKGWCPYFLTRYVVTFADVVVYNYQYMLDPKVSQLVSRSFEKESIVVFDEAHNIDNVCIEALSVDLDRRSLDRASRNLTTLSSQVNKLKQADKSRLDAEYRRLVEGL------RSSNAVVAPTYTDPTTNNAIDT----------------------ANDILIANPVLPDDVLDEAIPGNIRRAEHFVAFMRRLIEYLRQRIRVRQVESETPQAFLHHLHQAINMEIKPMKFCYTRLNSLLRTLEVTNLEEYNSLTDVADFATLVA 429

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Match: H3G8C6_PHYRM (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G8C6_PHYRM)

HSP 1 Score: 501 bits (1291), Expect = 1.290e-166
Identity = 254/460 (55.22%), Postives = 328/460 (71.30%), Query Frame = 3

Query:  327 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA-----EAGGGGELCEFFEGYSANGSD-AAMPNGIYSLDDLKEFGKEKGWCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGSXXXXXXXXXXXXXXXXXXGAXXXXXXXXXXXXXAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLVS 1688
            M++D+DGL+V FPY+ MY EQ  YM ELKR+LDA+GHC+LEMPTGTGKTV L+SL+ +Y+ AHP  GKL+YCTRTVPEM KC+EE+K+++ YR+  LG   +    + A+CLSSRRN+C+H RV+  +D E VDG CR MTASWVR KA     EA    E C F+E Y A  SD   +P G+YS+DDLK+ G +KGWCPYFL R+++  A+V+VYNYQYMLDPKV+ +VSR  E ES++VFDEAHNIDNVC EALSVDLD+RSLD ASR L  +SS+V+++K+ D+A+L+AEY+RLV GL      R+S  V                                    A   D + ANP LP D+L EA+PGNIRRAEHFV+FMR+++E+ + R+RV+ VESETP AF+H + Q  ++E KP+KF Y+RLNSLLRTLEVT L+++  L DVADFATLV+
Sbjct:    1 MKVDIDGLEVLFPYERMYSEQLQYMRELKRALDAQGHCMLEMPTGTGKTVSLLSLVLAYKHAHPTAGKLVYCTRTVPEMAKCVEEIKKLVAYRQQHLGERAQ----LTAVCLSSRRNMCVHPRVMAHADGEDVDGQCRKMTASWVRAKAAKAREEAAADVETCSFYEKYDARKSDDTVLPPGVYSVDDLKDLGVQKGWCPYFLTRYVVTFADVVVYNYQYMLDPKVSQLVSRSFEKESIIVFDEAHNIDNVCIEALSVDLDRRSLDRASRNLTTLSSQVSKLKQADKAKLDAEYRRLVEGL------RSSDAVV-----------------------------------APTHDIMIANPVLPDDVLDEAIPGNIRRAEHFVAFMRRLIEYLRQRIRVRQVESETPQAFLHHLHQAISMEIKPMKFCYTRLNSLLRTLEVTNLEEYNSLADVADFATLVA 415

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1564.3256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LDN2_ECTSI	3.810e-286	97.58	General transcription and DNA repair factor IIH he...	[more]
A0A836CJZ4_9STRA	8.430e-208	64.43	General transcription and DNA repair factor IIH he...	[more]
K8YZX4_NANGC	2.230e-203	67.32	General transcription and DNA repair factor IIH he...	[more]
A0A7R9U4D1_9STRA	1.880e-186	61.89	General transcription and DNA repair factor IIH he...	[more]
A0A7S2GG08_9STRA	2.320e-182	62.20	DNA helicase (Fragment) n=1 Tax=Dictyocha speculum...	[more]
A0A7S2D9H7_9STRA	4.490e-178	62.20	General transcription and DNA repair factor IIH he...	[more]
K3WFP6_GLOUD	5.330e-169	56.80	General transcription and DNA repair factor IIH he...	[more]
B8C2D9_THAPS	4.140e-168	57.20	General transcription and DNA repair factor IIH he...	[more]
A0A2P4X6T2_9STRA	5.130e-168	55.53	General transcription and DNA repair factor IIH he...	[more]
H3G8C6_PHYRM	1.290e-166	55.22	General transcription and DNA repair factor IIH he...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig1564	contig	E-siliculosus-1a_F_contig1564:471..8603 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	1365
Model size	1691
Exons	8
Ec32 ortholog	Ec-19_001310.1
Ec32 ortholog description	ATP-dependent helicase, C-terminal
Hectar predicted targeting category	other localisation
BRITE	ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	KL
EC	3.6.4.12
EggNOG OGs	COG1199@1,KOG1131@2759
EggNOG free text desc.	ATP-dependent DNA helicase activity
GOs	GO:0000018,GO:0000019,GO:0000109,GO:0000112,GO:0000166,GO:0000428,GO:0000439,GO:0000717,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0001503,GO:0001701,GO:0001942,GO:0002244,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0005694,GO:0005700,GO:0005703,GO:0005705,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007272,GO:0007275,GO:0007346,GO:0007348,GO:0007399,GO:0007417,GO:0007568,GO:0008022,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008366,GO:0008544,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009650,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009794,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009913,GO:0009987,GO:0010001,GO:0010389,GO:0010467,GO:0010468,GO:0010525,GO:0010528,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010927,GO:0010948,GO:0010972,GO:0012501,GO:0014003,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016462,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0021510,GO:0021700,GO:0021782,GO:0022008,GO:0022010,GO:0022402,GO:0022404,GO:0022405,GO:0022607,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030198,GO:0030218,GO:0030282,GO:0030554,GO:0030855,GO:0030880,GO:0031214,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032288,GO:0032289,GO:0032291,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032806,GO:0032989,GO:0032991,GO:0033043,GO:0033554,GO:0033683,GO:0034101,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035264,GO:0035315,GO:0035639,GO:0036094,GO:0036211,GO:0036260,GO:0040007,GO:0040016,GO:0042063,GO:0042303,GO:0042552,GO:0042592,GO:0042623,GO:0042633,GO:0043009,GO:0043062,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043249,GO:0043254,GO:0043388,GO:0043412,GO:0043588,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045786,GO:0045893,GO:0045911,GO:0045930,GO:0045935,GO:0045944,GO:0045951,GO:0045995,GO:0046483,GO:0047485,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048646,GO:0048699,GO:0048709,GO:0048731,GO:0048820,GO:0048821,GO:0048856,GO:0048863,GO:0048869,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051716,GO:0051726,GO:0051783,GO:0051983,GO:0055029,GO:0060218,GO:0060255,GO:0060429,GO:0061515,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070816,GO:0070911,GO:0071103,GO:0071695,GO:0071704,GO:0071817,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097367,GO:0097659,GO:0098687,GO:0098773,GO:0140097,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902554,GO:1902680,GO:1902749,GO:1902750,GO:1902911,GO:1903506,GO:1903508,GO:1990234,GO:1990391,GO:2000026,GO:2000112,GO:2001141
KEGG Module	M00290
KEGG Pathway	ko03022,ko03420,map03022,map03420
KEGG ko	ko:K10844
Preferred name	ERCC2
Seed eggNOG ortholog	2880.D8LDN2
Seed ortholog evalue	2.4e-232
Seed ortholog score	811.2
Taxonomic scope	Eukaryota

Relationships

The following CDS feature(s) are a part of this mRNA:

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928075.9324307-UTR-E-siliculosus-1a_F_contig1564:8277..8603	1622928075.9324307-UTR-E-siliculosus-1a_F_contig1564:8277..8603	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1564 8278..8603 -
1696318796.811836-UTR-E-siliculosus-1a_F_contig1564:8277..8603	1696318796.811836-UTR-E-siliculosus-1a_F_contig1564:8277..8603	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1564 8278..8603 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1564.3256.1	prot_E-siliculosus-1a_F_contig1564.3256.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig1564 471..8277 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig1564:471..8603-
coding sequence from alignment at E-siliculosus-1a_F_contig1564:471..8603-

protein sequence of mRNA_E-siliculosus-1a_F_contig1564.3256.1

>prot_E-siliculosus-1a_F_contig1564.3256.1 ID=prot_E-siliculosus-1a_F_contig1564.3256.1|Name=mRNA_E-siliculosus-1a_F_contig1564.3256.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=455bp
MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTV
CLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPE
GEKASTVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAE
AGGGGELCEFFEGYSANGSDAAMPNGIYSLDDLKEFGKEKGWCPYFLARH
IINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEAL
SVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGL
GRASGGVAGSAGGAGGAAAAGGGGGGAAGAGASAAVGGGATEVAAAADAI
PANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETP
LAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFA
TLVS*

mRNA from alignment at E-siliculosus-1a_F_contig1564:471..8603-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig1564.3256.1 ID=mRNA_E-siliculosus-1a_F_contig1564.3256.1|Name=mRNA_E-siliculosus-1a_F_contig1564.3256.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8133bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1564:471..8603- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGCGAGCGTTTGCCAGAAGCAAGGTGGCATCTAGAGACATTCCGTGAGG
TCAGAGTTTTGGAGGCTACCTTCAGCAATCGTTGTCGTGGAGATTCCCGG
GCTTACGCCCTAGAGAGTCGTCTCAGGATACACTGCTGGGACGACTCAAA
GGCTGCGAGGTTGCGCACACAGGCAATCGGCTCCGGCAGCATTTGTTCCT
GGTTCCTGGTAGCGGCATCGGTGGCGGCAACCCCACTTTCTGGGCGAACA
CAGGCACGCGTGTTCGTGCAGCACTTCCCTTTATTGCTCTGCCTCGGGTA
ACGCGAAAGCAGTGTGGCAACACAAAATGCGGCTGGACCTTGATGGGCTG
GACGTCTTCTTCCCGTATGACTTCATGTATCCAGAGCAGTATGACTACAT
GCTCGAGCTAAAGCGATCCTTGGATGCCAAAGGTCACTGCTTGCTAGAGA
TGCCCACAGGTGAGGACAACCCAAGCTGCTGTACAGCAGTACTTAATTGT
TTTCGGATGGGTTCGAAGTTCGTACGTTCGTACAAGTCTTGGACGAATGG
CGGCGCAAGTGCCTGTTTTTGGCGCGTACCGTGATGCTATTTCGTCATGT
CATCATGATGGAATCTCTTTCGAACGAAATCCGCGACCGAGACTTCAACG
CTCCTATTTGTGGTACTTGGTATCGCGAACGATAGCTCACGTGCGGAGGA
GGTGGAGTCTGCCATTTTCGGCGAATGGTGGGCCGAGTCTGTCGAGTCTG
TCGAGTCCGTCGTTTTCGCGAACAATAGTTCGTTTGCGAATTGGAGTGGG
CGGATCTGTCAGATCTTTAGCTCTCGAGCTCGGTAGCCAATGTGCTGGGG
GGAACGTGAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGC
AGCAGCGCGGACAGCGGCGATGATGGGATCGGGGATGAGGGGCTGGATGA
AACCTGGAGTGGAGAAACGACGCACCTTTTCGACCCTGGGAAGGCTGGGG
AGGAAGTGAGCAATGGCAGCAGCAGCAGCAGCAGCGAGTACAGCGGCGGC
GATGGGAGCGGGGATGAGGGGCTGGATGAAACCTGGAGTGGAGCCCCGAC
GCACCCTTTTGGCCACGGGAAGACATGTTTGCGTGGCGTCAGGAGACGGG
GGGCGGTGCCGGGGGTCGCGTAACCCTGCGATAGGGGCAAGAACGGGAGT
GGCGGCTTCGGCCAGAGCTCCGTTGGCGGCAGCAGCAGCAGCAGCGGCAG
CGGCGACGGCGGCGGCGGCTTCGGCCAGACCCCCGTCGGCGGCAGCAGCG
GCAACGGCGGCGGTGGTAGCGGCGGTAGCAGCGACGTCACCGGTAGCCGT
GTTGGCGCTGGAACGCATGACGGCCGCTTGGGCGGGGGAACGGCAACAGC
AGAGGTGGCAGCGGCGGCAGCAGCGGCGGCGTCACTGTTGACAGCGTTGA
CACCGGAGAGCATGACGGCCGCAGCGGCATCGGTTGCAACGGCGGCACCC
TCGAGTCGATCGGGAACGGCGAGGCAACGGTGGCAGCGACGACCTCACCT
TGTTACAGCCAACTGGGAGAACATGTGAAACGTTAACGAGTTTCTTTGGG
TTTTGTCAGAAGACTTCGCTTTGCTTCTTTCTTTTTTTGTTTTTCCTTTA
CTAGAGCACCTTTCGCTTTTGATGCAGAAAAAACATGTGTGCAGCAGGGT
GTGCGTAATTTGTTGTGTTGTTTTCATGATAGTTGTACGCTGCGACAAGA
CAAGCATTGATACAACCCGTGGGATAGGAAGCAGTGTGGTATCGGCAGCA
CGTGGTTATTTTCTTTGGTTCTTGATATACGTTCAGTCGCGTTTTACCAT
GCAGCTGAATGCTTCATATATTGGTTCGAGTTTCTCATGGGTGGATGGCG
TTTTACATACGACTTCGCTCTGTATTCTATGGAGGGAGGTACGTTCAGGC
GCGTGTTTTCTGCGAACTGGACACTTCAACACTTAGGATGTTTCGTACTG
TTGTTTTGATGTTAGTCCGGAGTTAAGTATCGCTCTTTGAGGTGTGTTTC
TGGCCTCAATAACGCGCAAGAAATGGGAAGATACTGTAGCGCGTTGTTTG
AAATGCATGAAGGCAAACCGCTCAGGGAGAGGGGGTGTTTTTGGAGTTTC
TGTTCAGGAGACAGGTTGCATGCGGTACGAACCTTCCTAGCGGCGAGTTC
TGTTATTGTTGCCATCATTTTTCTTCTTTCGTATGCTGCTCTTGCATCGA
AAATCGTTGGGCGGGATGTCATGTAGTGACCATGATTCTAGAGGAGCAGC
AATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
GTTTATTTTTAAGTCGGGTGGGTTTTTGTATTATTTTATTAAGCTNNNNN
NNNNNTTCTTTTTGCGTTTGCTGTTGTTGCTTTGATTATTGTTGGTTTGG
TTTTTTTTTTTTTTCCTTGTTTTTGGGGGGGCAGCAATCGTTTTTTTTTT
TTTTTTGCAGGTCTTCTTGTCTATCTATGTTTTAGGTGAATGTTAAAGCA
GGAGGGCTGTTGGAATAGTGATATAAGCTCGGGGTGATAGGTTTTGAGAT
GTGACAGCAGGGGGACTGTTTGCATGGATGCTTGGTAACGGTTTCTATCG
TTTCTTGGACAACAGCGACGGTACCGACTCGCGGGTGCGGGCTGTTTAGG
ATTTGGTCGTTGGACAGGACACTAGATTGGAGGAAGGATTTGACGTGTTT
TGACGAGTAATGGTTGGGGCCCCGTGCTGTTTCACAATAGTCATTTCTAT
TGGTCAATTTATTTGATAGTTCGTCTTGTTCGAAGACGTTGTGTCAATTC
TTTGACGTTGTTTTTCCAGAGTGGCCGTTTTCGTCCCGACGCTTTTCTGA
TGCAGCACACAAACACTTGTTGGGTACTATTCTGAGGATGAATCTATTGT
GTTGACGGTTTGAGATAATTTCCAGAGAGACGAATGCGTTGGATTCGTGA
ATACACTGATGGAGGCGCTTTGTGTTGAATGCGTAGCCAGTTTTGTTCAT
TAGGTTTTCTCAAGGGGTGTTTTCTATACTTGTCAGTCTACTACTCGTGA
AATATTGAGTGCAAGATCGTGCATCGTATCAAGTAGGGGGGCTGTTTGTG
GTACTTGGACATTGAGTTCGATCTGTGCGACCTCTGTGGGGGATACGCGT
ATGGGAAGTGTGGTTGTGGTGGGTATGTATGCGGTTTAGGTCTAAGTGCG
CCCCCCCCCCCCCCGGGAGAACACGCGCCCGTGTGCTCCTGGCACATGCC
TGAGAGGTCAGCACCCTTTGTTTTGTAATATCACATGATGTCTACGCGCG
TTCCTGACGTAACACAGCACCCAGCACTCAACACCAACCACCGAAGGGCG
GCAGCGCCACGAAAATCGCAAAATGTTGTTTGTAGCTTGTGCATTTTGTT
CACAATCGGACGGGGCGTGCGAAATGGCTCGTGTCGCCTCCCGATCGCAT
TGTAACGCCTACATGGCCATGGGTGGCCCCTGGAGGAGACCGCGGATAGC
TGACCGTCACCCTCCCGTCTGCTGCTGTTTCCATCTCGCTCCAGGCACCG
GGAAGACCGTCTGCCTGATCTCTCTCATCACCTCCTACCAGTTTGCCCAC
CCGGAGGTAGGCAAGCTCATCTACTGCACCCGCACGGTGCCCGAGATGAT
GAAGTGTATCGAGGAGCTCAAGAGAGTCATCGGGTACAGGAAGGACCAGC
TTGGACCGGAAGGGGAGAAGGCGAGTACCGTTGTGTCTTTGTGGAGTGGG
TGTGAGACCTTTCGGAAGCACATGCGGTACCATTCTGTAGGGCATGTAAC
GGGCCAGCTACATCAGAAAGAAAGGGGTCCGTTGATGAAAGGGTGAGCTT
GCGTGGTTGTGCAGCGTGGGACATCAGCCGCTCGATTTCTGAGCAAGCCA
TTTAGCGCTGGTAAGGCCGTACACACGCAAAGCCTCAGCGTGAGGCCAAA
TATTATGTTTCGCACATTATGTAGTTGCGCTTTGGTGAAACTATGCTCTG
AATCGCCGGGGGAACCAAAGGATCAGCCGTTGGCTTGCTCTGAGTTCCAA
CGGGCACCAAACAGTACAATTTACGAGTGGTGCCAGCTCAGAATGGACGA
TTATTCGGCGGTTCACGCTGCTGTTCCCACTATTGAATGAAGCCCAGGGT
ATGCTTTTGGCGTCGCCGTCCAAAATTCGTCCTCCATTGTAGCTGCTCCT
CCAGGCTGGTTCGCTCCGCTATGTTTTCCAAAATGCTGCGACAACATTTA
CTGGCTGTACATGTACCACTCGCTTGTTTTCGGGTGTTCGCCACCCTTCC
AGGTGCTAGCGCTTTGCCTGAGCTCCCGTCGAAACCTGTGTATTCACGAG
CGAGTGATCGAGGAGAGCGACAGGGAGGCCGTCGACGGGGCTTGCCGAGA
CATGACCGCTAGCTGGGTCAGGAAGAAGGCGGAAGCAGGGTAAGTCCAAT
TGGGTAACGCGGCGGACAACCAGAGACGAGGCGGTAGTCTACGCCGTTTT
TGTAAGATGCAAACATAGTGGATACAGTATAGAATCGAAAAAATTGAGGT
TGAGGGTTAGGGTCTGCGTGCCCCCCGTCGGTGTTTTTTTTGTATTACAC
TTGTCCAGACGGGGGTGTGGAGGTGGGTCGTATGGCGAGGACAAAACAGC
CATAGATGGAGCAATCGGAAGCGACATGGTTTTGGGGTATTCCAGATTTG
CCGTGTACGCGCGCGGAGGCTGGACAGGAACGTGGGTCTTCCCAAGACAA
GAAGAACAGGGAGAAGGAGCGGAGCCGAGAGACTGAAAAAGAGGGATATG
ATTACGTGCAGAGGGGAAGACGGGATTCGATCCCGCGTACTCCTTTGTCT
GTCTCCCTGCCTTTGTTTTCCGCGTCTCGCAGGACCACCCACGCTGTTAT
TGTCTTGCCTCTTTGGCTTACCGGCTTGGCGCCCGCAAAAGAAGAGCTGG
TGTTGCGAATTCACGCCGTCCTTATCGATGCTTGAAGGAATCAGGCGTTG
CTTCACCCGACGTCACTCACGCGTACGCGCGTTTTACGGCACTGCCAGTT
ATGAATCGCGCTCCCAGGTTACAACTCCCGACGTATTGCACGCAATACCA
AGACGTCCACGCACCATTCGCACGATAGCGAAAAAAAAACAGCACCGATC
TTAACAAATTAATGTATGGTGCAGGGGCGGAGGGGAGCTGTGCGAGTTCT
TTGAGGGCTACTCGGCGAACGGCAGCGACGCCGCGATGCCGAACGGGATC
TACAGCCTCGACGACCTGAAGGAGTTCGGCAAGGAAAAGGGCTGGTGCCC
CTACTTCTTGGCGAGGCACATCATCAACCACGCCAACGTGCTGGTGTACA
ACTACCAGTACATGCTGGACCCGAAGGTGGGGCTTTGGGTGCAGCTCAAG
TTAATTGCGGCGCAATCGCACAAAGTATTGGAATTGGTGGAAGAGAAGCA
ACATGTGCGGCTCAATTCAAGTGCGGCGCAATCATATAGTCTTGGAATTG
GTGGAAGAGAAGCAACATGTGCGGCTCAATTCATGTGCGGCGCAATCACC
AAATGTTCGAAACGAGAAAGAATCATGCGCCTGCCACTGGATACTCGTCT
CTGGTGAGAGTGTGGCTTTGCGGCATCACTTTCAATCGGCTCGTCCGTCG
CGAAATGTACCGTGGTCGCCTGGTGTAGGTTGCCGGCATGGTGTCCCGCG
AGCTCGAGGCGGAGAGCGTGGTGGTCTTCGACGAGGCCCACAACATCGAC
AACGTGTGCACGGAGGCTCTCAGCGTAGACCTCGACAAGCGGAGCCTCGA
TGCCGCTTCCAGATGCCTCGGGAAGATTTCATCCAAGGTACTTGGTTTGT
TGCCTGCTCTTTTATTTTTGTACGTGGGAAAATTGGCTTGAGTGGAAAAC
TTGGTTGTGCTCGTGTGTTCTTTGCAACATAGGGAACTTGTCTTGAGTGA
AAAATCTCGTTTCTTGTTCTACAACACCAAACAACTTTCGGCGGCGTTTT
TCACCGCCGCCGCTGGCGGTACTGTTTGTAGTTCGGCTGTAAATGTGATG
GAAGACGAGGAGCATGACCTGAGACGAGTCTGAATATATTGATAGGTCTT
TAAGCTTGTCTCGGCATTCTGAGAGGCTTGAAACAGCACTACTTTCATCA
TTATCACCCAGTCGGCCTCGTTACGTATATCCACGTTTTTTTTTTGCAAT
ATTTTCCCCTTCGCGTACGTCCATGATTTTTTGTCGCCAACATGGCCATC
CCCAATACGTGCTCCCACAATTTTCTGTTTGCCGATACCGTGGTTGACCT
ACCTAGGTGGCCGAGATGAAACGAACGGACCAAGCAAGGCTCAACGCGGA
GTACCAACGCCTGGTCAGCGGCCTCGCAGACTCGGGCTTGGGCCGAGCGA
GCGGGGGCGTAGCCGGCAGCGCCGGGGGCGCGGGGGGTGCCGCCGCCGCT
GGCGGCGGTGGCGGCGGAGCAGCGGGAGCGGGGGCTAGCGCCGCCGTCGG
CGGCGGTGCGACGGAGGTGGCAGCGGCGGCGGACGCGATTCCGGCCAACC
CGGCGCTTCCCGCCGACATCTTGCAGGAGGCGGTGCCCGGCAACATCCGG
AGGGCGGAGCATTTCGTGTCGTTCATGCGAAAGGTGCGGTGCGGTGCGTT
GCGTCGTCTCGAGGTTTTTCTTGAGAGTCTTGACGGGGTTTCCGAATCCG
AGAAGAGCGAGCGCATGCATTCATGCCTAGTCTTGTCTCTCTCCCCTTCT
CGCCTAGCGTATATCTTCGACGCTGGCGACGTGCTCCGCGTCGTGATCGC
CTTTAGACCTCTCCGCTGATCTTGTTGCTGATACACTCCTGAGGTTTGGT
GTAGATCGAAGCTGGTATTGGGTTCCTACCGCTTTTGGCGCAAAGAAAAG
CGTAACCTAGTGGTTGCGTATTGAAGTATTCTCTGGATCTAACAGCGGGT
CGGGTTCCACCAAAATCCACTGTGCGTGACGAGGCAGTATGGCGCCGGTC
GATGGAAAACGAACCAGAGAGTGCGTTTTTCCTACGCGATGTAAACCAGC
GTAGGGGGTGTAGTACCACCCGCCGCCCATATTGTAAGGTACCACCCCCT
CGTCCCCTGCCCCCTTGCCGTGCCTCAAACGACCACGCGTCCTTGAACGA
AGGAAAACCGAAACGACTCGCTTGTTCCCCACCCTATCCTCGCCTCCGTT
CCTTCAACTCCCCGGCCTGTTGCCCGACGACCAAATCTCCGGCCAACTTT
TCTTTCCCGTCGTTGTCGGCGACCACCACCGGGGTGTTGTCATCCCGGCC
GAAACACCGAGAAAGGTCGTGGAGCACTTCAAGACGCGCGTGCGCGTGCA
GAGCGTGGAGTCGGAGACTCCCCTGGCGTTCGTCCACCGCATGCAGCAGG
TCACGGCGCTGGAGAGGAAGCCGCTCAAGTTCGCCTACTCCCGACTGAAC
TCGCTCCTGCGGTGCGTTTGGCAAAAAGCGTTGACTTGCGTCCTTGGTCT
CGTGTGTGTTTTTGCGCCTTGTGTGTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTTTTGTTGTTGCATCAACCTCGCACACCGGTGGACCAATCAAGAC
ACGCCAGTGGGGTGGCAAGAAGTAGAAAATGTTGATCCGCCGGTCGGGTC
GGGGGGGGTGGGAGGCAGGCAGGCCGAAATCACGGTTTGTTTGGAGTGAG
TGCATCGTCTTGGTTTTCCCTCGATAAGTCTGTGCGAATTAATGTGACCT
TTCGCCTGTTCTGCCCCGTTTGTTTTTTGGAGGGTTGGGGAGGGTGTACT
CGACACCAGAATTTCTAATCGCCTCTCACCTGTTGGCTTGCTCCTGACTG
TTCTCTTTTTGGACGATTGATTTTCTGTTTTTGGATGCGATTGCTTTCGG
TTTTGCCTGTGCGCGCGTGTGTTTATAGAGACTAGATCCTATGTGGTTGT
CATGCTAGTCATTTTCGTGCCGTTTCTGTCTCCTGCTTTTCGAATGTTAT
GTTCCAGAACGTTGGAGGTCACGGGGCTGGACGACTTCCGCCCGCTTGTC
GACGTGGCCGACTTCGCTACGTTGGTGAGTTGA

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1564:471..8603-

>mRNA_E-siliculosus-1a_F_contig1564.3256.1 ID=mRNA_E-siliculosus-1a_F_contig1564.3256.1|Name=mRNA_E-siliculosus-1a_F_contig1564.3256.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2730bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1564:471..8603- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGCTGGACCTTGATGGGCTGGACGTCTTCTTCCCGTATGACTTCAT
GTATCCAGAGCAGTATGACTACATGCTCGAGCTAAAGCGATCCTTGGATG
CCAAAGGTCACTGCTTGCTAGAGATGCCCACAGATGCGGCTGGACCTTGA
TGGGCTGGACGTCTTCTTCCCGTATGACTTCATGTATCCAGAGCAGTATG
ACTACATGCTCGAGCTAAAGCGATCCTTGGATGCCAAAGGTCACTGCTTG
CTAGAGATGCCCACAGGCACCGGGAAGACCGTCTGCCTGATCTCTCTCAT
CACCTCCTACCAGTTTGCCCACCCGGAGGTAGGCAAGCTCATCTACTGCA
CCCGCACGGTGCCCGAGATGATGAAGTGTATCGAGGAGCTCAAGAGAGTC
ATCGGGTACAGGAAGGACCAGCTTGGACCGGAAGGGGAGAAGGCGAGTAC
CGCACCGGGAAGACCGTCTGCCTGATCTCTCTCATCACCTCCTACCAGTT
TGCCCACCCGGAGGTAGGCAAGCTCATCTACTGCACCCGCACGGTGCCCG
AGATGATGAAGTGTATCGAGGAGCTCAAGAGAGTCATCGGGTACAGGAAG
GACCAGCTTGGACCGGAAGGGGAGAAGGCGAGTACCGTGCTAGCGCTTTG
CCTGAGCTCCCGTCGAAACCTGTGTATTCACGAGCGAGTGATCGAGGAGA
GCGACAGGGAGGCCGTCGACGGGGCTTGCCGAGACATGACCGCTAGCTGG
GTCAGGAAGAAGGCGGAAGCAGGGTGCTAGCGCTTTGCCTGAGCTCCCGT
CGAAACCTGTGTATTCACGAGCGAGTGATCGAGGAGAGCGACAGGGAGGC
CGTCGACGGGGCTTGCCGAGACATGACCGCTAGCTGGGTCAGGAAGAAGG
CGGAAGCAGGGGGCGGAGGGGAGCTGTGCGAGTTCTTTGAGGGCTACTCG
GCGAACGGCAGCGACGCCGCGATGCCGAACGGGATCTACAGCCTCGACGA
CCTGAAGGAGTTCGGCAAGGAAAAGGGCTGGTGCCCCTACTTCTTGGCGA
GGCACATCATCAACCACGCCAACGTGCTGGTGTACAACTACCAGTACATG
CTGGACCCGAAGGGGCGGAGGGGAGCTGTGCGAGTTCTTTGAGGGCTACT
CGGCGAACGGCAGCGACGCCGCGATGCCGAACGGGATCTACAGCCTCGAC
GACCTGAAGGAGTTCGGCAAGGAAAAGGGCTGGTGCCCCTACTTCTTGGC
GAGGCACATCATCAACCACGCCAACGTGCTGGTGTACAACTACCAGTACA
TGCTGGACCCGAAGGTTGCCGGCATGGTGTCCCGCGAGCTCGAGGCGGAG
AGCGTGGTGGTCTTCGACGAGGCCCACAACATCGACAACGTGTGCACGGA
GGCTCTCAGCGTAGACCTCGACAAGCGGAGCCTCGATGCCGCTTCCAGAT
GCCTCGGGAAGATTTCATCCAAGGTTGCCGGCATGGTGTCCCGCGAGCTC
GAGGCGGAGAGCGTGGTGGTCTTCGACGAGGCCCACAACATCGACAACGT
GTGCACGGAGGCTCTCAGCGTAGACCTCGACAAGCGGAGCCTCGATGCCG
CTTCCAGATGCCTCGGGAAGATTTCATCCAAGGTGGCCGAGATGAAACGA
ACGGACCAAGCAAGGCTCAACGCGGAGTACCAACGCCTGGTCAGCGGCCT
CGCAGACTCGGGCTTGGGCCGAGCGAGCGGGGGCGTAGCCGGCAGCGCCG
GGGGCGCGGGGGGTGCCGCCGCCGCTGGCGGCGGTGGCGGCGGAGCAGCG
GGAGCGGGGGCTAGCGCCGCCGTCGGCGGCGGTGCGACGGAGGTGGCAGC
GGCGGCGGACGCGATTCCGGCCAACCCGGCGCTTCCCGCCGACATCTTGC
AGGAGGCGGTGCCCGGCAACATCCGGAGGGCGGAGCATTTCGTGTCGTTC
ATGCGAAAGGTGGCCGAGATGAAACGAACGGACCAAGCAAGGCTCAACGC
GGAGTACCAACGCCTGGTCAGCGGCCTCGCAGACTCGGGCTTGGGCCGAG
CGAGCGGGGGCGTAGCCGGCAGCGCCGGGGGCGCGGGGGGTGCCGCCGCC
GCTGGCGGCGGTGGCGGCGGAGCAGCGGGAGCGGGGGCTAGCGCCGCCGT
CGGCGGCGGTGCGACGGAGGTGGCAGCGGCGGCGGACGCGATTCCGGCCA
ACCCGGCGCTTCCCGCCGACATCTTGCAGGAGGCGGTGCCCGGCAACATC
CGGAGGGCGGAGCATTTCGTGTCGTTCATGCGAAAGGTCGTGGAGCACTT
CAAGACGCGCGTGCGCGTGCAGAGCGTGGAGTCGGAGACTCCCCTGGCGT
TCGTCCACCGCATGCAGCAGGTCACGGCGCTGGAGAGGAAGCCGCTCAAG
TTCGCCTACTCCCGACTGAACTCGCTCCTGCGGTCGTGGAGCACTTCAAG
ACGCGCGTGCGCGTGCAGAGCGTGGAGTCGGAGACTCCCCTGGCGTTCGT
CCACCGCATGCAGCAGGTCACGGCGCTGGAGAGGAAGCCGCTCAAGTTCG
CCTACTCCCGACTGAACTCGCTCCTGCGAACGTTGGAGGTCACGGGGCTG
GACGACTTCCGCCCGCTTGTCGACGTGGCCGACTTCGCTACGTTGGTGAG
TTGAAACGTTGGAGGTCACGGGGCTGGACGACTTCCGCCCGCTTGTCGAC
GTGGCCGACTTCGCTACGTTGGTGAGTTGA