prot_E-siliculosus-1a_F_contig1560.3230.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1560.3230.1
Unique Nameprot_E-siliculosus-1a_F_contig1560.3230.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length140
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1560.3230.1 vs. uniprot
Match: D7G4A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A6_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 1.110e-77
Identity = 125/139 (89.93%), Postives = 132/139 (94.96%), Query Frame = 0 
Query:    1 MSGSLGQHTGVIAAVVGGLVAVAATTAVARKWKSGGTKRGRMLGNIANGREFIDTLSAEVAELEATIALAAEASDFDTARKEHERKSREHDEHVTQVLTHLDKCTGGGDIGVARKKEIHRAEALGLRISKILPGGPVDG 139
            MSGSLGQ+TGVIAAVV GLVAVA TTAVARKWKSGGTKR RMLGNIA+GREF+D LSAEVA+LEATIALAAEASD DTARKE+ERKSREHDEHVTQVLTHLDKCTGG +IGVARKK+IHRAE LGLRISKILPGGPVDG
Sbjct:    1 MSGSLGQYTGVIAAVVCGLVAVAGTTAVARKWKSGGTKR-RMLGNIASGREFLDALSAEVADLEATIALAAEASDLDTARKENERKSREHDEHVTQVLTHLDKCTGGDEIGVARKKQIHRAEVLGLRISKILPGGPVDG 138
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BLAST of mRNA_E-siliculosus-1a_F_contig1560.3230.1 vs. uniprot
Match: A0A6H5JHT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT5_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 1.850e-76
Identity = 125/139 (89.93%), Postives = 131/139 (94.24%), Query Frame = 0 
Query:    1 MSGSLGQHTGVIAAVVGGLVAVAATTAVARKWKSGGTKRGRMLGNIANGREFIDTLSAEVAELEATIALAAEASDFDTARKEHERKSREHDEHVTQVLTHLDKCTGGGDIGVARKKEIHRAEALGLRISKILPGGPVDG 139
            MSGSLGQHTGVIAAVV  LVAVAATTAVARKWKSGG+KR RMLGNIA+GREFIDTLSAEVA+LEATIALAAEASD DTAR+EHERKSREHDE VTQVLTHLDKCTGGG+I VARKK+IHRAEALGLRIS ILPGG VDG
Sbjct:    1 MSGSLGQHTGVIAAVVFALVAVAATTAVARKWKSGGSKR-RMLGNIASGREFIDTLSAEVADLEATIALAAEASDLDTARQEHERKSREHDESVTQVLTHLDKCTGGGEISVARKKQIHRAEALGLRISNILPGGHVDG 138
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1560.3230.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4A6_ECTSI1.110e-7789.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHT5_9PHAE1.850e-7689.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 53..73
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 33..139
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
IPR036533BAG domain superfamilyGENE3D1.20.58.120coord: 42..130
e-value: 2.0E-5
score: 26.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1560contigE-siliculosus-1a_F_contig1560:18668..20581 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1560.3230.1mRNA_E-siliculosus-1a_F_contig1560.3230.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1560 17889..20665 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1560.3230.1 ID=prot_E-siliculosus-1a_F_contig1560.3230.1|Name=mRNA_E-siliculosus-1a_F_contig1560.3230.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=140bp
MSGSLGQHTGVIAAVVGGLVAVAATTAVARKWKSGGTKRGRMLGNIANGR
EFIDTLSAEVAELEATIALAAEASDFDTARKEHERKSREHDEHVTQVLTH
LDKCTGGGDIGVARKKEIHRAEALGLRISKILPGGPVDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036533BAG_dom_sf